# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mnj11353.fasta.nr -Q ../query/mKIAA0050.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0050, 158 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7907181 sequences Expectation_n fit: rho(ln(x))= 4.9973+/-0.000178; mu= 6.9954+/- 0.010 mean_var=61.2951+/-11.976, 0's: 44 Z-trim: 131 B-trim: 167 in 2/64 Lambda= 0.163818 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|22766903|gb|AAH37481.1| Centb1 protein [Mus mus ( 552) 1027 250.9 2.1e-64 gi|81901000|sp|Q8K2H4.1|ACAP1_MOUSE RecName: Full= ( 740) 1027 250.9 2.7e-64 gi|74181770|dbj|BAE32594.1| unnamed protein produc ( 740) 1027 250.9 2.7e-64 gi|119610615|gb|EAW90209.1| centaurin, beta 1, iso ( 503) 995 243.3 3.7e-62 gi|149053093|gb|EDM04910.1| centaurin, beta 1 (pre ( 153) 988 241.3 4.4e-62 gi|3183210|sp|Q15027.1|ACAP1_HUMAN RecName: Full=A ( 740) 995 243.4 5.1e-62 gi|194217609|ref|XP_001918179.1| PREDICTED: simila ( 682) 964 236.0 7.6e-60 gi|151554432|gb|AAI49786.1| CENTB1 protein [Bos ta ( 648) 963 235.8 8.6e-60 gi|73955517|ref|XP_859211.1| PREDICTED: similar to ( 494) 954 233.6 3e-59 gi|73955519|ref|XP_859254.1| PREDICTED: similar to ( 503) 954 233.6 3.1e-59 gi|73955511|ref|XP_536619.2| PREDICTED: similar to ( 503) 954 233.6 3.1e-59 gi|73955515|ref|XP_859171.1| PREDICTED: similar to ( 505) 954 233.6 3.1e-59 gi|158706428|sp|A5PK26.1|ACAP1_BOVIN RecName: Full ( 745) 945 231.6 1.8e-58 gi|126309228|ref|XP_001370205.1| PREDICTED: simila ( 740) 943 231.1 2.5e-58 gi|209155286|gb|ACI33875.1| Centaurin-beta-1 [Salm ( 768) 766 189.3 1e-45 gi|47214064|emb|CAG00722.1| unnamed protein produc ( 818) 735 181.9 1.7e-43 gi|120537368|gb|AAI29037.1| Zgc:153917 [Danio reri ( 757) 732 181.2 2.7e-43 gi|21410228|gb|AAH31005.1| Similar to centaurin, b ( 201) 702 173.8 1.2e-41 gi|28385994|gb|AAH46455.1| Centb2 protein [Mus mus ( 366) 704 174.4 1.4e-41 gi|74002843|ref|XP_545162.2| PREDICTED: similar to ( 778) 705 174.8 2.3e-41 gi|74181160|dbj|BAE27843.1| unnamed protein produc ( 752) 704 174.6 2.6e-41 gi|158706468|sp|Q6ZQK5.2|ACAP2_MOUSE RecName: Full ( 770) 704 174.6 2.6e-41 gi|81909628|sp|Q5FVC7.1|ACAP2_RAT RecName: Full=AR ( 770) 704 174.6 2.6e-41 gi|119598432|gb|EAW78026.1| centaurin, beta 2, iso ( 773) 702 174.1 3.7e-41 gi|194222716|ref|XP_001499150.2| PREDICTED: simila ( 777) 702 174.1 3.7e-41 gi|4688902|emb|CAB41450.1| centaurin beta2 [Homo s ( 778) 702 174.1 3.7e-41 gi|38173852|gb|AAH60767.1| Centaurin, beta 2 [Homo ( 778) 702 174.1 3.7e-41 gi|75071553|sp|Q6IVG4.1|ACAP2_RABIT RecName: Full= ( 778) 702 174.1 3.7e-41 gi|39932727|sp|Q15057.3|ACAP2_HUMAN RecName: Full= ( 778) 702 174.1 3.7e-41 gi|109053897|ref|XP_001093762.1| PREDICTED: centau ( 932) 702 174.2 4.3e-41 gi|114591214|ref|XP_516962.2| PREDICTED: centaurin ( 964) 702 174.2 4.4e-41 gi|126343157|ref|XP_001372081.1| PREDICTED: simila ( 831) 700 173.7 5.4e-41 gi|114666143|ref|XP_512009.2| PREDICTED: centaurin ( 616) 678 168.4 1.6e-39 gi|114666141|ref|XP_001169930.1| PREDICTED: centau ( 691) 678 168.4 1.7e-39 gi|82233823|sp|Q5ZK62.1|ACAP2_CHICK RecName: Full= ( 781) 678 168.5 1.9e-39 gi|224060512|ref|XP_002189166.1| PREDICTED: centau ( 784) 678 168.5 1.9e-39 gi|126632811|emb|CAM56653.1| novel protein similar ( 185) 656 162.9 2.1e-38 gi|159155175|gb|AAI54689.1| LOC100127680 protein [ ( 837) 661 164.5 3.2e-38 gi|73955513|ref|XP_859130.1| PREDICTED: similar to ( 490) 642 159.8 4.7e-37 gi|223648290|gb|ACN10903.1| Centaurin-beta-5 [Salm ( 618) 643 160.1 4.8e-37 gi|189531288|ref|XP_001920370.1| PREDICTED: wu:fb7 ( 557) 639 159.2 8.5e-37 gi|149027241|gb|EDL82939.1| rCG23042, isoform CRA_ ( 155) 568 142.0 3.4e-32 gi|210114082|gb|EEA61844.1| hypothetical protein B ( 780) 576 144.4 3.4e-32 gi|109493724|ref|XP_001062879.1| PREDICTED: simila ( 315) 570 142.7 4.3e-32 gi|118101039|ref|XP_417581.2| PREDICTED: similar t ( 834) 547 137.5 4.2e-30 gi|26336553|dbj|BAC31959.1| unnamed protein produc ( 215) 525 132.0 5.1e-29 gi|126329487|ref|XP_001376353.1| PREDICTED: simila ( 621) 527 132.7 8.7e-29 gi|149024845|gb|EDL81342.1| centaurin, beta 5 (pre ( 563) 525 132.2 1.1e-28 gi|148683105|gb|EDL15052.1| centaurin, beta 5, iso ( 694) 525 132.3 1.3e-28 gi|18256883|gb|AAH21851.1|AAH21851 Unknown (protei ( 322) 521 131.1 1.4e-28 >>gi|22766903|gb|AAH37481.1| Centb1 protein [Mus musculu (552 aa) initn: 1027 init1: 1027 opt: 1027 Z-score: 1312.5 bits: 250.9 E(): 2.1e-64 Smith-Waterman score: 1027; 99.367% identity (99.367% similar) in 158 aa overlap (1-158:395-552) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : :::::::::::::::::::::::::::: gi|227 GIVRSKSECPSDDMGSLHPGALLFQAAGHPPSLPTMADALAHGADVNWVNVGQGNATPLI 370 380 390 400 410 420 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|227 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE 430 440 450 460 470 480 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|227 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 490 500 510 520 530 540 mKIAA0 RSHDLHTL :::::::: gi|227 RSHDLHTL 550 >>gi|81901000|sp|Q8K2H4.1|ACAP1_MOUSE RecName: Full=ARFG (740 aa) initn: 1027 init1: 1027 opt: 1027 Z-score: 1310.7 bits: 250.9 E(): 2.7e-64 Smith-Waterman score: 1027; 99.367% identity (99.367% similar) in 158 aa overlap (1-158:583-740) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : :::::::::::::::::::::::::::: gi|819 GIVRSKSECPSDDMGSLHPGALLFQAAGHPPSLPTMADALAHGADVNWVNVGQGNATPLI 560 570 580 590 600 610 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE 620 630 640 650 660 670 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 680 690 700 710 720 730 mKIAA0 RSHDLHTL :::::::: gi|819 RSHDLHTL 740 >>gi|74181770|dbj|BAE32594.1| unnamed protein product [M (740 aa) initn: 1027 init1: 1027 opt: 1027 Z-score: 1310.7 bits: 250.9 E(): 2.7e-64 Smith-Waterman score: 1027; 99.367% identity (99.367% similar) in 158 aa overlap (1-158:583-740) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : :::::::::::::::::::::::::::: gi|741 GIVRSKSECPSDDMGSLHPGALLFQAAGHPPSLPTMADALAHGADVNWVNVGQGNATPLI 560 570 580 590 600 610 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE 620 630 640 650 660 670 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 680 690 700 710 720 730 mKIAA0 RSHDLHTL :::::::: gi|741 RSHDLHTL 740 >>gi|119610615|gb|EAW90209.1| centaurin, beta 1, isoform (503 aa) initn: 995 init1: 995 opt: 995 Z-score: 1272.3 bits: 243.3 E(): 3.7e-62 Smith-Waterman score: 995; 96.203% identity (98.101% similar) in 158 aa overlap (1-158:346-503) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : :::::::::::::::::: :: :::::: gi|119 GSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLI 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|119 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 380 390 400 410 420 430 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 440 450 460 470 480 490 mKIAA0 RSHDLHTL :::::::: gi|119 RSHDLHTL 500 >>gi|149053093|gb|EDM04910.1| centaurin, beta 1 (predict (153 aa) initn: 988 init1: 988 opt: 988 Z-score: 1270.9 bits: 241.3 E(): 4.4e-62 Smith-Waterman score: 988; 98.693% identity (100.000% similar) in 153 aa overlap (6-158:1-153) 10 20 30 40 50 60 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLIRATAANSLLACEFLLQNGANVNQADSAGRG :::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|149 MADALAHGADVNWVNAGQGNATPLIRATAANSLLACEFLLQNGANVNQADSAGRG 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 PLHHATILGHTGLACLFLKRGADLGARDTEGRDPLTIAMETTNADIVTLLRLAKMREAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PLHHATILGHTGLACLFLKRGADLGARDTEGRDPLTIAMETTNADIVTLLRLAKMREAEA 60 70 80 90 100 110 130 140 150 mKIAA0 AQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHTL ::::.::::::::::::::::::::::::::::::::: gi|149 AQGQTGDETYLDIFRDFSLMASDDPEKLSRRSHDLHTL 120 130 140 150 >>gi|3183210|sp|Q15027.1|ACAP1_HUMAN RecName: Full=ARFGA (740 aa) initn: 995 init1: 995 opt: 995 Z-score: 1269.8 bits: 243.4 E(): 5.1e-62 Smith-Waterman score: 995; 96.203% identity (98.101% similar) in 158 aa overlap (1-158:583-740) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : :::::::::::::::::: :: :::::: gi|318 GSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLI 560 570 580 590 600 610 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|318 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 620 630 640 650 660 670 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|318 GRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 680 690 700 710 720 730 mKIAA0 RSHDLHTL :::::::: gi|318 RSHDLHTL 740 >>gi|194217609|ref|XP_001918179.1| PREDICTED: similar to (682 aa) initn: 964 init1: 964 opt: 964 Z-score: 1230.7 bits: 236.0 E(): 7.6e-60 Smith-Waterman score: 964; 93.038% identity (97.468% similar) in 158 aa overlap (1-158:525-682) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : :::::::::::::::::: :: :::::: gi|194 GSFRSKPEPPSDDLGSLHPGALLFRAAGHPPSLPTMADALAHGADVNWVNGGQENATPLI 500 510 520 530 540 550 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE .::::::::::::::::::::::::. :::::::::::::::::::::::::::::::.: gi|194 QATAANSLLACEFLLQNGANVNQADNHGRGPLHHATILGHTGLACLFLKRGADLGARDSE 560 570 580 590 600 610 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR ::::::::::..:::::::::::::::::.:::::::::::::::::::::::::::::: gi|194 GRDPLTIAMEAANADIVTLLRLAKMREAEVAQGQAGDETYLDIFRDFSLMASDDPEKLSR 620 630 640 650 660 670 mKIAA0 RSHDLHTL ::.::::: gi|194 RSYDLHTL 680 >>gi|151554432|gb|AAI49786.1| CENTB1 protein [Bos taurus (648 aa) initn: 963 init1: 963 opt: 963 Z-score: 1229.8 bits: 235.8 E(): 8.6e-60 Smith-Waterman score: 963; 92.405% identity (97.468% similar) in 158 aa overlap (1-158:491-648) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : :::::::::::::::::: :: :::::: gi|151 GSFRSKPEPPSEDLQSLHPGALLFRAAGHPPSLPTMADALAHGADVNWVNGGQENATPLI 470 480 490 500 510 520 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE .::::::::::::::::::::::.:. ::::::::::::::::::::::::::::.::.: gi|151 QATAANSLLACEFLLQNGANVNQVDNQGRGPLHHATILGHTGLACLFLKRGADLGVRDSE 530 540 550 560 570 580 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR ::::::::.::.::::::::::::::::.::::::::::::::::::::::::::::::: gi|151 GRDPLTIAVETANADIVTLLRLAKMREADAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 590 600 610 620 630 640 mKIAA0 RSHDLHTL :::::::: gi|151 RSHDLHTL >>gi|73955517|ref|XP_859211.1| PREDICTED: similar to Cen (494 aa) initn: 954 init1: 954 opt: 954 Z-score: 1220.0 bits: 233.6 E(): 3e-59 Smith-Waterman score: 954; 91.772% identity (97.468% similar) in 158 aa overlap (1-158:337-494) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : ::::::::::::::::::... :::::: gi|739 GSCRARPEPPSDDLGSLHPGALLFRAAGHPPSLPTMADALAHGADVNWVNAARENATPLI 310 320 330 340 350 360 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE .::::::::::::::::::::::::. :::::::::::::::::::::::::::::::.: gi|739 QATAANSLLACEFLLQNGANVNQADNHGRGPLHHATILGHTGLACLFLKRGADLGARDSE 370 380 390 400 410 420 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR .:::::::::.:::::::::::::::.:::::::::::::::::::::::::::::::: gi|739 DKDPLTIAMETANADIVTLLRLAKMREVEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 430 440 450 460 470 480 mKIAA0 RSHDLHTL :::::::: gi|739 RSHDLHTL 490 >>gi|73955519|ref|XP_859254.1| PREDICTED: similar to Cen (503 aa) initn: 954 init1: 954 opt: 954 Z-score: 1219.9 bits: 233.6 E(): 3.1e-59 Smith-Waterman score: 954; 91.772% identity (97.468% similar) in 158 aa overlap (1-158:346-503) 10 20 30 mKIAA0 PHLPTMADALAHGADVNWVNVGQGNATPLI : ::::::::::::::::::... :::::: gi|739 GSCRARPEPPSDDLGSLHPGALLFRAAGHPPSLPTMADALAHGADVNWVNAARENATPLI 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA0 RATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTE .::::::::::::::::::::::::. :::::::::::::::::::::::::::::::.: gi|739 QATAANSLLACEFLLQNGANVNQADNHGRGPLHHATILGHTGLACLFLKRGADLGARDSE 380 390 400 410 420 430 100 110 120 130 140 150 mKIAA0 GRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR .:::::::::.:::::::::::::::.:::::::::::::::::::::::::::::::: gi|739 DKDPLTIAMETANADIVTLLRLAKMREVEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 440 450 460 470 480 490 mKIAA0 RSHDLHTL :::::::: gi|739 RSHDLHTL 500 158 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 15:32:32 2009 done: Thu Mar 12 15:36:45 2009 Total Scan time: 608.430 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]