FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4007.ptfa, 178 aa
 vs ./tmplib.26680 library

1768839 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.7756+/-0.00398; mu= 14.3685+/- 0.267
 mean_var=67.1540+/-15.262, 0's: 0 Z-trim: 1  B-trim: 43 in 1/35
 Lambda= 0.1565

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0051  ( 1681 res)   mpf00519                  (1681)  906  214 2.4e-56


>>mKIAA0051  ( 1681 res)   mpf00519                       (1681 aa)
 initn: 899 init1: 899 opt: 906  Z-score: 1103.8  bits: 214.0 E(): 2.4e-56
Smith-Waterman score: 906;  76.966% identity (76.966% ungapped) in 178 aa overlap (1-178:112-289)

                                             10        20        30
mKIAA4                               KMVSEKKIYDVEQTRYKKSGLHFRHTDNTV
                                     :.:: ::::: :::::: .:::::::::..
mKIAA0 LGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI
              90       100       110       120       130       140 

               40        50        60        70        80        90
mKIAA4 QWLRAMEAIGLPKIFYPETTDVYDRKNIPRMIYCIHALSLYLFKLGIAPQIQDLLGKVDF
       ::: ::. :::::::::::::.:::::.:: :::::::::::::::.::::::: :::::
mKIAA0 QWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQIQDLYGKVDF
             150       160       170       180       190       200 

              100       110       120       130       140       150
mKIAA4 TEEEISNMRKELEKYGIQMPAFSKIGGILANELSVDEAALHAAVIAINEAIEKGVAKQTI
       :::::.::. :::::::::::::::::::::::::::::::::::::::::.. :: .:.
mKIAA0 TEEEINNMKIELEKYGIQMPAFSKIGGILANELSVDEAALHAAVIAINEAIDRRVAADTF
             210       220       230       240       250       260 

              160       170                                        
mKIAA4 ITLRNPNAVLTCVDDSLSQEYQKELWEA                                
        .:.::::.:. ....:.  ::  :..:                                
mKIAA0 TALKNPNAMLVNLEEGLAPTYQDVLYQAKQDKMTNAKNRTENSDRERDVYEELLTQAEIQ
             270       280       290       300       310       320 




178 residues in 1 query   sequences
1768839 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:07 2006 done: Mon Mar 27 10:59:07 2006
 Scan time:  0.360 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]