FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4094.ptfa, 386 aa
 vs ./tmplib.26680 library

1768631 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.4249+/-0.00553; mu= 0.8229+/- 0.367
 mean_var=146.7017+/-34.554, 0's: 0 Z-trim: 2  B-trim: 20 in 1/35
 Lambda= 0.1059

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0572  ( 1992 res)   mbg08792                  (1992)  473   84 9.2e-17


>>mKIAA0572  ( 1992 res)   mbg08792                       (1992 aa)
 initn: 458 init1: 153 opt: 473  Z-score: 393.3  bits: 83.9 E(): 9.2e-17
Smith-Waterman score: 473;  31.118% identity (32.288% ungapped) in 331 aa overlap (39-363:648-972)

       10        20        30        40        50        60        
mKIAA4 QDAVPRFRWPGDAECASSTHTPTMSGCKLPMGLCPDMCPAAERARRERERRLHRLEVEPG
                                     .: ::::::  ::  :: . .:  .:: ::
mKIAA0 EEKYRLLDQRDRIMRQARVKRTDLDKARAFVGTCPDMCPEKERYLRETRSQLSVFEVVPG
       620       630       640       650       660       670       

       70        80        90       100       110       120        
mKIAA4 GRGNAPRADPKRTVKEYSRPAAGKPRPPPSLLRPPPVLLATVRYLAGEVAGRGDVSCAEV
           . ..:   .:::::: .: . .: :  :::  ::  :. ::. ..  . . :  . 
mKIAA0 ----TDQVDHAAAVKEYSRSSADQEEPLPHELRPSAVLSRTMDYLVTQIMDQKEGSLRDW
           680       690       700       710       720       730   

      130       140       150       160       170       180        
mKIAA4 ASFVADRLRAVRLDLSLQGVDDADAATVLEAALATLLAVVARVRPEETRGAADPVLLQTQ
        .:: .: :..: :.. : . :  .....:      .   :.   ::  .. :  . . .
mKIAA0 YDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHC-AHFMCEEPMSSFDAKINNEN
           740       750       760       770        780       790  

      190       200          210       220       230       240     
mKIAA4 VQEGFGSLRRCYA--RGKGPY-PRQAAFQGLFLLYNLGSVEALQEVLQLPAALRACPPLQ
       . . . ::.. :   :.:: .   .: :::  .: ::.. . :.:: :.   .:  : ..
mKIAA0 MTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNKGDILREVQQFHPDVRNSPEVN
            800       810       820       830       840       850  

         250       260       270       280       290         300   
mKIAA4 AALAVDAAFREDNHARLFRLLRTLPYLQSCAVQEHIGYARRKALARLSRA--LSTPKGQT
        :. . ::.  .: .:.:.:...  ::..: .. ...  :. ::  :. :  .:: .. .
mKIAA0 FAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFNQIRKDALRALNVAYTVSTRRSTV
            860       870       880       890       900       910  

           310       320       330       340        350       360  
mKIAA4 LPLDFIEHFLALDGLQEARDLCQAHGLTLDKDRVVFLRGQYSE-EGLPPPGAYHILVGNK
       .::: . ..: .   .:: .. . ::::.    : . :. . : :::   .   ...: :
mKIAA0 FPLDGVVRMLLFRDSEEATNFLNYHGLTVADGCVELNRSAFLEPEGLCK-ARKSVFIGRK
            920       930       940       950       960        970 

            370       380                                          
mKIAA4 LQGHTLEDVVMAEEGDIHRPGSAA                                    
       :                                                           
mKIAA0 LTVSVGEVVNGGPLPPVPRHTPVCSFNSQNKYVGESLATELPISTQRAGGDPAGGGRGED
             980       990      1000      1010      1020      1030 




386 residues in 1 query   sequences
1768631 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:01:41 2006 done: Mon Mar 27 11:01:42 2006
 Scan time:  0.620 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]