FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0118.ptfa, 253 aa vs ./tmplib.26680 library 1768764 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4194+/-0.00475; mu= 14.7483+/- 0.319 mean_var=101.2378+/-23.413, 0's: 0 Z-trim: 4 B-trim: 2 in 1/35 Lambda= 0.1275 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA3012 ( 253 res) mph02039 ( 253) 530 107 8.2e-25 mKIAA4130 ( 194 res) mie08042 ( 194) 269 59 2e-10 >>mKIAA3012 ( 253 res) mph02039 (253 aa) initn: 534 init1: 432 opt: 530 Z-score: 537.8 bits: 107.1 E(): 8.2e-25 Smith-Waterman score: 530; 35.537% identity (38.222% ungapped) in 242 aa overlap (15-250:23-253) 10 20 30 40 mKIAA0 KSRAREERAPRRRRCGVRR-GAGLGRRGSGGGMAAAGGGAAAAAGRA----- ::.. :.: .:.::: .:::. . . mKIAA3 GSEWGRRLLYRNSLAHSSLSITCGAESWGGGCVSKGGGGG---GGGGSCSDMSSMNPEYD 10 20 30 40 50 50 60 70 80 90 100 mKIAA0 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG : ::..:.:.. :::. :.::. .. .....:.:. ..: . ... :: ..: ::::: mKIAA3 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQRWDTAG 60 70 80 90 100 110 110 120 130 140 150 160 mKIAA0 QERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE ::::... ::: ..: :.::::::..::..::.:..:. .. .... .:::: :: mKIAA3 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 130 140 150 160 170 170 180 190 200 210 220 mKIAA0 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ .. :. :. .:.:.: .::::. ..:. :. . .:.. .: : :.. mKIAA3 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM------AAEIKKRM-GPGATA 180 190 200 210 220 230 230 240 250 mKIAA0 AGAARRGVQIIDDEPQAQSSGGCCSSG .:: . .:.: .. : ::.:::: mKIAA3 GGAEKSNVKI-QSTPVKQSGGGCC 240 250 >>mKIAA4130 ( 194 res) mie08042 (194 aa) initn: 175 init1: 175 opt: 269 Z-score: 279.6 bits: 58.9 E(): 2e-10 Smith-Waterman score: 296; 28.495% identity (31.361% ungapped) in 186 aa overlap (50-221:8-190) 20 30 40 50 60 70 mKIAA0 GAGLGRRGSGGGMAAAGGGAAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHIT :.:..:.: ::: :.. . ...: . .. mKIAA4 VMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP 10 20 30 80 90 100 110 120 130 mKIAA0 TLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKV :. .... ... ::.:.::.::::::: . : :. : :.. .. ... . ::.... mKIAA4 TVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 40 50 60 70 80 90 140 150 160 170 180 mKIAA0 -KNWVKELRKMLGNEICLCIVGNKIDLEKERH------------VSIQEAESYAESVGAK ..:. :.... : . . .:::: ::....: :. .:....:. .:: mKIAA4 PEKWTPEVKHFCPN-VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 HY-HTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQAGAARRGVQIIDDEPQAQS : . ::: . :..:.: .. : :. .. .: mKIAA4 GYMECSAKTKDGVREVF-EMATRAALQARRGKKKSGCLIL 160 170 180 190 250 mKIAA0 SGGCCSSG 253 residues in 1 query sequences 1768764 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:12:32 2006 done: Mon Mar 27 10:12:32 2006 Scan time: 0.480 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]