# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mni11376.fasta.nr -Q ../query/mFLJ00200.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00200, 192 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919894 sequences Expectation_n fit: rho(ln(x))= 5.5393+/-0.000193; mu= 6.9865+/- 0.011 mean_var=87.6862+/-16.976, 0's: 34 Z-trim: 37 B-trim: 2855 in 1/64 Lambda= 0.136965 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148684532|gb|EDL16479.1| mCG2865, isoform CRA_a ( 317) 1290 263.9 1.7e-68 gi|148684533|gb|EDL16480.1| mCG2865, isoform CRA_b ( 429) 1290 264.0 2.1e-68 gi|26353658|dbj|BAC40459.1| unnamed protein produc ( 436) 1290 264.1 2.2e-68 gi|67462067|sp|Q8BX43.1|TR19L_MOUSE RecName: Full= ( 436) 1290 264.1 2.2e-68 gi|149068760|gb|EDM18312.1| tumor necrosis factor ( 315) 1248 255.6 5.3e-66 gi|149068759|gb|EDM18311.1| tumor necrosis factor ( 427) 1248 255.7 6.7e-66 gi|114639297|ref|XP_001174786.1| PREDICTED: simila ( 430) 1159 238.2 1.3e-60 gi|114639295|ref|XP_001174800.1| PREDICTED: simila ( 486) 1159 238.2 1.4e-60 gi|119595304|gb|EAW74898.1| tumor necrosis factor ( 250) 1154 237.0 1.7e-60 gi|73988181|ref|XP_542318.2| PREDICTED: similar to ( 438) 1157 237.8 1.8e-60 gi|193787025|dbj|BAG51848.1| unnamed protein produ ( 299) 1154 237.1 2e-60 gi|21264092|sp|Q969Z4.1|TR19L_HUMAN RecName: Full= ( 430) 1154 237.2 2.6e-60 gi|119595301|gb|EAW74895.1| tumor necrosis factor ( 457) 1154 237.2 2.7e-60 gi|37589953|gb|AAH51810.2| RELT tumor necrosis fac ( 430) 1149 236.2 5.2e-60 gi|14042909|dbj|BAB55441.1| unnamed protein produc ( 430) 1144 235.2 1e-59 gi|109107728|ref|XP_001110447.1| PREDICTED: simila ( 440) 1140 234.4 1.8e-59 gi|21264101|sp|Q9N092.1|TR19L_MACFA RecName: Full= ( 430) 1135 233.4 3.5e-59 gi|194673367|ref|XP_582052.3| PREDICTED: RELT tumo ( 717) 1118 230.2 5.3e-58 gi|194213463|ref|XP_001917488.1| PREDICTED: simila ( 503) 1090 224.6 1.9e-56 gi|126327928|ref|XP_001368574.1| PREDICTED: simila ( 442) 893 185.6 9e-45 gi|95768566|gb|ABF57364.1| tumor necrosis factor r ( 359) 808 168.7 8.7e-40 gi|148692322|gb|EDL24269.1| mCG62734 [Mus musculus ( 355) 525 112.8 5.9e-23 gi|119595298|gb|EAW74892.1| tumor necrosis factor ( 96) 509 109.2 2e-22 gi|94732960|emb|CAK04232.1| novel protein similar ( 392) 291 66.6 5.3e-09 gi|42542885|gb|AAH66389.1| RELT tumor necrosis fac ( 401) 280 64.5 2.4e-08 >>gi|148684532|gb|EDL16479.1| mCG2865, isoform CRA_a [Mu (317 aa) initn: 1290 init1: 1290 opt: 1290 Z-score: 1386.1 bits: 263.9 E(): 1.7e-68 Smith-Waterman score: 1290; 100.000% identity (100.000% similar) in 192 aa overlap (1-192:126-317) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::::::::: gi|148 SGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLLPA 100 110 120 130 140 150 40 50 60 70 80 90 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR 160 170 180 190 200 210 100 110 120 130 140 150 mFLJ00 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL 220 230 240 250 260 270 160 170 180 190 mFLJ00 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI :::::::::::::::::::::::::::::::::::::::::: gi|148 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI 280 290 300 310 >>gi|148684533|gb|EDL16480.1| mCG2865, isoform CRA_b [Mu (429 aa) initn: 1290 init1: 1290 opt: 1290 Z-score: 1384.3 bits: 264.0 E(): 2.1e-68 Smith-Waterman score: 1290; 100.000% identity (100.000% similar) in 192 aa overlap (1-192:238-429) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::::::::: gi|148 SGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLLPA 210 220 230 240 250 260 40 50 60 70 80 90 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR 270 280 290 300 310 320 100 110 120 130 140 150 mFLJ00 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL 330 340 350 360 370 380 160 170 180 190 mFLJ00 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI :::::::::::::::::::::::::::::::::::::::::: gi|148 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI 390 400 410 420 >>gi|26353658|dbj|BAC40459.1| unnamed protein product [M (436 aa) initn: 1290 init1: 1290 opt: 1290 Z-score: 1384.2 bits: 264.1 E(): 2.2e-68 Smith-Waterman score: 1290; 100.000% identity (100.000% similar) in 192 aa overlap (1-192:245-436) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::::::::: gi|263 SGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLLPA 220 230 240 250 260 270 40 50 60 70 80 90 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR 280 290 300 310 320 330 100 110 120 130 140 150 mFLJ00 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL 340 350 360 370 380 390 160 170 180 190 mFLJ00 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI :::::::::::::::::::::::::::::::::::::::::: gi|263 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI 400 410 420 430 >>gi|67462067|sp|Q8BX43.1|TR19L_MOUSE RecName: Full=Tumo (436 aa) initn: 1290 init1: 1290 opt: 1290 Z-score: 1384.2 bits: 264.1 E(): 2.2e-68 Smith-Waterman score: 1290; 100.000% identity (100.000% similar) in 192 aa overlap (1-192:245-436) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::::::::: gi|674 SGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLLPA 220 230 240 250 260 270 40 50 60 70 80 90 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR 280 290 300 310 320 330 100 110 120 130 140 150 mFLJ00 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL 340 350 360 370 380 390 160 170 180 190 mFLJ00 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI :::::::::::::::::::::::::::::::::::::::::: gi|674 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI 400 410 420 430 >>gi|149068760|gb|EDM18312.1| tumor necrosis factor rece (315 aa) initn: 1248 init1: 1248 opt: 1248 Z-score: 1341.3 bits: 255.6 E(): 5.3e-66 Smith-Waterman score: 1248; 95.833% identity (99.479% similar) in 192 aa overlap (1-192:124-315) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::::::::: gi|149 SGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLLPA 100 110 120 130 140 150 40 50 60 70 80 90 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR ::: ::.:::::::::::::::::::::::::::::::::::::::::::::::::..:: gi|149 SPSTPHVCPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPSTSR 160 170 180 190 200 210 100 110 120 130 140 150 mFLJ00 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL :::::::::::::::::::::::::::::::::::::::::::::::::.:::.:::::: gi|149 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSESDLPESPQPGL 220 230 240 250 260 270 160 170 180 190 mFLJ00 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI ::::::::::.:::.::::::::::::::::::::::::::: gi|149 PPEQRALLGSSGSHAKWLKPPAENKAEENRYVVRLSESNLVI 280 290 300 310 >>gi|149068759|gb|EDM18311.1| tumor necrosis factor rece (427 aa) initn: 1248 init1: 1248 opt: 1248 Z-score: 1339.5 bits: 255.7 E(): 6.7e-66 Smith-Waterman score: 1248; 95.833% identity (99.479% similar) in 192 aa overlap (1-192:236-427) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::::::::: gi|149 SGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLLPA 210 220 230 240 250 260 40 50 60 70 80 90 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPTASR ::: ::.:::::::::::::::::::::::::::::::::::::::::::::::::..:: gi|149 SPSTPHVCPHHHHLHTVQGLASLSGPCCSRCSQKWPEVLLSPEAAAATTPAPTLLPSTSR 270 280 290 300 310 320 100 110 120 130 140 150 mFLJ00 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPGL :::::::::::::::::::::::::::::::::::::::::::::::::.:::.:::::: gi|149 APKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSESDLPESPQPGL 330 340 350 360 370 380 160 170 180 190 mFLJ00 PPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI ::::::::::.:::.::::::::::::::::::::::::::: gi|149 PPEQRALLGSSGSHAKWLKPPAENKAEENRYVVRLSESNLVI 390 400 410 420 >>gi|114639297|ref|XP_001174786.1| PREDICTED: similar to (430 aa) initn: 774 init1: 774 opt: 1159 Z-score: 1244.4 bits: 238.2 E(): 1.3e-60 Smith-Waterman score: 1159; 88.601% identity (96.373% similar) in 193 aa overlap (1-192:238-430) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::: .: :: gi|114 SGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPA 210 220 230 240 250 260 40 50 60 70 80 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQK-WPEVLLSPEAAAATTPAPTLLPTAS :..::::::.::::::::::::::::::::::: ::::::::::.:.:::.:.:::. . gi|114 PPNVPHICPHRHHLHTVQGLASLSGPCCSRCSQKKWPEVLLSPEAVATTTPVPSLLPNPT 270 280 290 300 310 320 90 100 110 120 130 140 mFLJ00 RAPKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPG :.:::.:: ::::::::::::::::::::::::::..:::::::::::: :::::::::: gi|114 RVPKAGAKAGRQGEITILSVGRFRVARIPEQRTSSMVSEVKTITEAGPSWGDLPDSPQPG 330 340 350 360 370 380 150 160 170 180 190 mFLJ00 LPPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI :::::.::::::::::::::::::::::::::::::::::::: gi|114 LPPEQQALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI 390 400 410 420 430 >>gi|114639295|ref|XP_001174800.1| PREDICTED: similar to (486 aa) initn: 774 init1: 774 opt: 1159 Z-score: 1243.7 bits: 238.2 E(): 1.4e-60 Smith-Waterman score: 1159; 88.601% identity (96.373% similar) in 193 aa overlap (1-192:294-486) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::: .: :: gi|114 SGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPA 270 280 290 300 310 320 40 50 60 70 80 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQK-WPEVLLSPEAAAATTPAPTLLPTAS :..::::::.::::::::::::::::::::::: ::::::::::.:.:::.:.:::. . gi|114 PPNVPHICPHRHHLHTVQGLASLSGPCCSRCSQKKWPEVLLSPEAVATTTPVPSLLPNPT 330 340 350 360 370 380 90 100 110 120 130 140 mFLJ00 RAPKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPG :.:::.:: ::::::::::::::::::::::::::..:::::::::::: :::::::::: gi|114 RVPKAGAKAGRQGEITILSVGRFRVARIPEQRTSSMVSEVKTITEAGPSWGDLPDSPQPG 390 400 410 420 430 440 150 160 170 180 190 mFLJ00 LPPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI :::::.::::::::::::::::::::::::::::::::::::: gi|114 LPPEQQALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI 450 460 470 480 >>gi|119595304|gb|EAW74898.1| tumor necrosis factor rece (250 aa) initn: 769 init1: 769 opt: 1154 Z-score: 1242.2 bits: 237.0 E(): 1.7e-60 Smith-Waterman score: 1154; 88.601% identity (96.373% similar) in 193 aa overlap (1-192:58-250) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA :::::::::::::::::::::::: .: :: gi|119 LGINPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPA 30 40 50 60 70 80 40 50 60 70 80 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQK-WPEVLLSPEAAAATTPAPTLLPTAS :..::::::.::::::::::::::::::::::: ::::::::::.:::::.:.:::. . gi|119 PPNVPHICPHRHHLHTVQGLASLSGPCCSRCSQKKWPEVLLSPEAVAATTPVPSLLPNPT 90 100 110 120 130 140 90 100 110 120 130 140 mFLJ00 RAPKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPG :.:::.:: ::::::::::::::::::::::::::..:::::::::::: :::::::::: gi|119 RVPKAGAKAGRQGEITILSVGRFRVARIPEQRTSSMVSEVKTITEAGPSWGDLPDSPQPG 150 160 170 180 190 200 150 160 170 180 190 mFLJ00 LPPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI :::::.::::::::.:::::::::::::::::::::::::::: gi|119 LPPEQQALLGSGGSRTKWLKPPAENKAEENRYVVRLSESNLVI 210 220 230 240 250 >>gi|73988181|ref|XP_542318.2| PREDICTED: similar to Tum (438 aa) initn: 760 init1: 760 opt: 1157 Z-score: 1242.1 bits: 237.8 E(): 1.8e-60 Smith-Waterman score: 1157; 89.637% identity (94.819% similar) in 193 aa overlap (1-192:246-438) 10 20 30 mFLJ00 AAALEELLKEYHSKQLVQTSHRPVPRLLPA ::::::::::::::::::::::::::: :. gi|739 SGINPAYRAEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLPPG 220 230 240 250 260 270 40 50 60 70 80 mFLJ00 SPSIPHICPHHHHLHTVQGLASLSGPCCSRCSQK-WPEVLLSPEAAAATTPAPTLLPTAS ::.::::::.::::::::::::::::::::::: ::::::::::::::::.: .::. . gi|739 PPSMPHICPHRHHLHTVQGLASLSGPCCSRCSQKKWPEVLLSPEAAAATTPTPRVLPNLA 280 290 300 310 320 330 90 100 110 120 130 140 mFLJ00 RAPKASAKPGRQGEITILSVGRFRVARIPEQRTSSLLSEVKTITEAGPSEGDLPDSPQPG :::::.:: :::::::::::::::::::::::.:: ::.::::::::: :::::::::: gi|739 RAPKAGAKAGRQGEITILSVGRFRVARIPEQRSSSAASELKTITEAGPSGGDLPDSPQPG 340 350 360 370 380 390 150 160 170 180 190 mFLJ00 LPPEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI :: :::::::::::::::::::::::::::::::::::::::: gi|739 LPTEQRALLGSGGSHTKWLKPPAENKAEENRYVVRLSESNLVI 400 410 420 430 192 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 22:58:54 2009 done: Thu Mar 12 23:03:34 2009 Total Scan time: 668.880 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]