FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0491.ptfa, 396 aa
 vs ./tmplib.26680 library

1768621 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.7951+/-0.00519; mu= 9.6793+/- 0.347
 mean_var=126.0905+/-28.742, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.1142

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1848  ( 408 res)   mbj00047                   ( 408)  904  160 2.8e-40


>>mKIAA1848  ( 408 res)   mbj00047                        (408 aa)
 initn: 1197 init1: 903 opt: 904  Z-score: 815.4  bits: 159.8 E(): 2.8e-40
Smith-Waterman score: 1495;  58.561% identity (64.481% ungapped) in 403 aa overlap (29-396:8-408)

               10        20        30        40        50        60
mKIAA0 RRRRRPAPQPGRGAPRLPASAAGGSARLPPGMNIMDFNVKKLAADAGTFLSRAVQFTEEK
                                   :     ::::.::::.::: :..:::::::::
mKIAA1                      LWGRRGGPAYGRAMDFNMKKLASDAGIFFTRAVQFTEEK
                                    10        20        30         

               70        80        90       100       110       120
mKIAA0 LGQAEKTELDAHLENLLSKAECTKIWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPS
       .:::::::::::.::::..:. :: :::.:..::::::::::.::.:::.:::::::.::
mKIAA1 FGQAEKTELDAHFENLLARADSTKNWTERILRQTEVLLQPNPSARVEEFLYEKLDRKVPS
      40        50        60        70        80        90         

              130       140       150       160       170       180
mKIAA0 RINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRIGTADRELIQTSALNFLTPLRN
       :..: :::.::: .:..:.::.: ::..::: .:..::.:.:.:..:.:..:.:::::::
mKIAA1 RVTNGELLAQYMAEAASELGPSTPYGKTLIKVSEAEKRLGAAERDFIHTASLSFLTPLRN
     100       110       120       130       140       150         

              190       200       210       220                    
mKIAA0 FIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSS------------------
       :.:::.:::.:::.::::.:::::: :.:::::::::.:...                  
mKIAA1 FLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATTVPDFQETRPRNYILSASA
     160       170       180       190       200       210         

                       230       240       250       260       270 
mKIAA0 -----------EQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQ
                  :::::..:.:::::::.::::::::::::..:::::..::..: :::::
mKIAA1 SAVSNDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVKSQTTYYAQ
     220       230       240       250       260       270         

             280       290            300       310        320     
mKIAA0 CYQYMLDLQKQLGSFPSNYLSNNNQ-----TSGTPVPYALSNAIGPS-AQASTGSLVITC
       ::..::::::::: ::........      .: .:.  : .  . :. :  .    .  :
mKIAA1 CYRHMLDLQKQLGRFPGTFVGTTEPASPPLSSTSPTTTAATMPVVPTGAVLAPPEEAALC
     280       290       300       310       320       330         

         330       340       350       360       370       380     
mKIAA0 PSNLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKG
         ..     .:..:::::::::.::.:.::.:::::.:::.:. ::: :::.:::::.::
mKIAA1 LEEVAP--PASGTRKARVLYDYEAADSSELALLADELITVYSLPGMDPDWLIGERGNKKG
     340         350       360       370       380       390       

         390      
mKIAA0 KVPITYLELLN
       :::.::::::.
mKIAA1 KVPVTYLELLS
       400        




396 residues in 1 query   sequences
1768621 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:21:56 2006 done: Mon Mar 27 10:21:56 2006
 Scan time:  0.630 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]