FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4147.ptfa, 506 aa
 vs ./tmplib.26680 library

1768511 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.5974+/-0.00657; mu= 9.2390+/- 0.440
 mean_var=207.9754+/-47.281, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0889

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0840  ( 523 res)   mpm03159                   ( 523)  519   79 9.8e-16


>>mKIAA0840  ( 523 res)   mpm03159                        (523 aa)
 initn: 853 init1: 333 opt: 519  Z-score: 374.8  bits: 79.0 E(): 9.8e-16
Smith-Waterman score: 643;  28.753% identity (31.193% ungapped) in 473 aa overlap (1-448:53-513)

                                             10        20        30
mKIAA4                               SDWQSSRPRTPRAVVEAPAGLERSLLRVGR
                                     :: .::  .::  . .  :  : : :    
mKIAA0 QGGGGHDGDRMGANNGKQYGSEGKGSSSVSSDVSSSTDHTPTKAQRNVATSEDSDL----
             30        40        50        60        70            

               40        50        60        70        80          
mKIAA4 ASLALLPPPPPAPGTPGPALAPIFALRTPQRPARAAPAGPMRRDVNGVTKSRF-----EM
        :.  :  : ::   : :.: : :     .  . .. .:     :..   .:.     ..
mKIAA0 -SMRTLSTPSPALICP-PTL-PGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRL
        80        90         100       110       120       130     

            90       100       110       120       130       140   
mKIAA4 FS--NSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDF
        :  ....: :.. :: . ...::::: .  :::::.: : :  :: :   :. : :   
mKIAA0 ASRPQKEQASIDR-LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGE
         140        150       160       170       180       190    

           150        160             170       180       190      
mKIAA4 QRDIEGRVVENISKR-CGG------FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNG
         ... :... ...: :        .:. . . ::  . : .: :.:: : ... : ..:
mKIAA0 TINVD-RALKVLTRRLCQDTPNVCLMLETVIVSGCRRLTDRGLYTIAQCCPELRRLEVSG
           200       210       220       230       240       250   

        200       210       220       230         240              
mKIAA4 CTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSL--KALSEGCPL------LEQLNISW
       : . .. .  .. ..: .:.:::...:...: .::  .:  .  ::      .. :... 
mKIAA0 CYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTD
           260       270       280       290       300       310   

      250       260       270       280       290       300        
mKIAA4 CDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEG
       :  .  .:.....  :  :  :.:. :..: ::.:.:.  .:  .  :... :  ..: :
mKIAA0 CFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCTSIKELSVSDCRFVSDFG
           320       330       340       350       360       370   

      310       320       330       340       350       360        
mKIAA4 LITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNC
       :  : .   .:. :  . :. :::. .  ... : .:: :..  :  .:: :   ::.::
mKIAA0 LREIAKLESRLRYLSIAHCGRITDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNC
           380       390       400       410       420       430   

      370       380       390       400       410       420        
mKIAA4 HELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEV
        .:...:. .:  ..:. : .:...:  :. :::. :: :: .:.. .. . :  : :..
mKIAA0 TKLKSLDIGKCPLVSDTGLESLALNCFNLKRLSLKSCESITGQGLQIVAAN-C-FD-LQM
           440       450       460       470       480          490

      430       440          450       460       470       480     
mKIAA4 IELDNCPLITDA---SLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAP
       .....: . ..:     .: : :                                     
mKIAA0 LNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF                           
              500       510       520                              




506 residues in 1 query   sequences
1768511 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:03:19 2006 done: Mon Mar 27 11:03:20 2006
 Scan time:  0.700 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]