FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1541.ptfa, 471 aa vs ./tmplib.26680 library 1768546 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.1684+/-0.00399; mu= 17.8152+/- 0.268 mean_var=75.6577+/-17.359, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1475 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4213 ( 509 res) mpj01439 ( 509) 2761 597 1.2e-171 >>mKIAA4213 ( 509 res) mpj01439 (509 aa) initn: 2828 init1: 2739 opt: 2761 Z-score: 3173.9 bits: 596.7 E(): 1.2e-171 Smith-Waterman score: 2761; 87.152% identity (88.478% ungapped) in 467 aa overlap (5-471:50-509) 10 20 30 mKIAA1 ALGAPRSAALGWARPARAMAGAGGGGCPAGGNDF :: : : . : ::::::: ::. mKIAA4 VPSPLRCHPPPSAPSIPPSPGVGAEPRSRRPRRARQG-HHLQRDMAGAGGG------NDI 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA1 QWCFSQVKGAVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKGRAHSRGE ::::::::::::.::::::::::::::.::.:::::::::::::::.::::: ..::::: mKIAA4 QWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE 80 90 100 110 120 130 100 110 120 130 140 150 mKIAA1 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWKISERDKR ::::::::::::::::::::::::::::::::::.:::.::::::::::::::::::::: mKIAA4 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKR 140 150 160 170 180 190 160 170 180 190 200 210 mKIAA1 AEGYNLKDEDGRLRDPFRITALRVPILKPMDLMVEASPRRIFANAHTYHINSISVNSDHE ::::::.:::: ::: .:.::::...::::::::::::::::::::::::::.:::.: mKIAA4 PEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE 200 210 220 230 240 250 220 230 240 250 260 270 mKIAA1 TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGT ::::::::::::::::::::::::::::::::::::::::::::::..::.::::::::: mKIAA4 TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT 260 270 280 290 300 310 280 290 300 310 320 330 mKIAA1 IRLCDMRSSALCDRHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKV :::::::.:::::::.:.::::::::.::::::::::::::::::::::::::::::::. mKIAA4 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKI 320 330 340 350 360 370 340 350 360 370 380 390 mKIAA1 WDLNMEGRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFD ::::::.:::::.::::::::::::::::::::::::::::::::..::::::::::::: mKIAA4 WDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 380 390 400 410 420 430 400 410 420 430 440 450 mKIAA1 RNTRRDVTLEASRENSKPRASLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAWHPMESI :::.::.::::::::.:::. :::::::..:::::::::::::::::::::::::: :.: mKIAA4 RNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENI 440 450 460 470 480 490 460 470 mKIAA1 IAVAATNNLYIFQDKIN ::::.::::::::::.: mKIAA4 IAVATTNNLYIFQDKVN 500 471 residues in 1 query sequences 1768546 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:47:40 2006 done: Mon Mar 27 10:47:41 2006 Scan time: 0.650 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]