FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA2035.ptfa, 623 aa vs ./tmplib.26680 library 1768394 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.7310+/-0.00586; mu= 3.8154+/- 0.389 mean_var=192.2860+/-45.461, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.0925 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1064 ( 912 res) mpm10227 ( 912) 683 104 8.3e-23 >>mKIAA1064 ( 912 res) mpm10227 (912 aa) initn: 712 init1: 331 opt: 683 Z-score: 501.8 bits: 103.5 E(): 8.3e-23 Smith-Waterman score: 807; 32.584% identity (36.511% ungapped) in 623 aa overlap (39-623:318-911) 10 20 30 40 50 60 mKIAA2 HSSPASLYQQMPSEMQRSADSESMQGSAEFYDDYYPQHAAHNFQPPDNSADEMWHEEFAQ . :..:. : . :: : : .. mKIAA1 GVRFPGPGGPSGPMGPGPNMGPPGPMGGPMHPDMHPDM--HPDMHPDMHPD--MHPDMHP 290 300 310 320 330 340 70 80 90 100 110 120 mKIAA2 QQPPIARDTAHLGSGPNSSSRM-TSHCPLSASGLPPAVQRALF--IPLTQRYQEDEEPA- .. : . .: : : . : . :. : . . ... :: .: . :. : mKIAA1 DMHPDMHPDMPMGPGMNPGPPMGPGGPPMMPYGPGDSPHSGMMPPIPPAQNFYENFYPQQ 350 360 370 380 390 400 130 140 150 160 170 180 mKIAA2 -GTQPHRASSKEEDDTANWYSSSEEEEGSGVKSILRTLQKQTGTLRNQQLPPTELSVPTD : . . . . ::.:::::.:.: ::.: :::.::..::.. . .. : : mKIAA1 EGMEMEPGLVGDAGDTGNWYSSDEDEGGSSVTSILKTLRQQTSSRPQASVGEPSSSGLGD 410 420 430 440 450 460 190 200 210 220 230 240 mKIAA2 PRLAKEKRKRNQVVDPRLRTVPR--QDIKKPHESVPVDLRLVWDPKKLRGNGGAPGGSSA ::: : . ... :::: :: . . : : : ::. : : :.: mKIAA1 PRLQKGHPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGPS-DPRLAR----ALPTSKA 470 480 490 500 510 250 260 270 280 290 300 mKIAA2 RGAEFDLRHTNAGANHKSKRREDDDEDSERELREKAFLIPLDSSPGIVLQDPRSQLRQFS .:. :. . :: . .. . ..:..:: ::::: :::: :: :.::::::.::: mKIAA1 EGS---LHSSPAGPSSSKGQPPAEEEEGERALREKAVNIPLDPLPGHPLRDPRSQLQQFS 520 530 540 550 560 570 310 320 330 340 350 mKIAA2 HIKMDIILNKPNFAKHIVWAPEDLLPVPLPKPD--PVSSINLPLPPLIADQRLNRLW--N ::: :. :.::.::. ..: ::::.:.:.:: : :: . :: : : ::.: . mKIAA1 HIKKDVTLSKPSFARTVLWNPEDLIPLPIPKQDVPPVPAALQSLPAL--DPRLHRSTPPG 580 590 600 610 620 630 360 370 380 390 400 410 mKIAA2 TKSDHQGALSLDPTSAAKA--KLSLTHREGCLEQSGDLHSSGGKLGDPRLQKNFDPRLHR . .: : ::..... . : : . .. .... : . .: :::... mKIAA1 PPNTRQRPGSTDPSTSGSNLPDFELLSR---ILKTVNVNTPGQS------EKPSDPRVRK 640 650 660 670 680 420 430 440 450 460 470 mKIAA2 LPNTESHQVTAKDSHSSRSALPLARWN--PALSQSSTAAPINVASVTPPLYAPK-LSSEG :. : : .::.: : :: : :. ..: .: : : :. :.. : mKIAA1 TPTDPRLQKPADPVAASRAAKPCPTEASPPAASPSGDSSP----PATAP-YDPRVLAAGG 690 700 710 720 730 480 490 500 510 mKIAA2 LPPGTSS---SVLSGISLYDPR--DKGSLSAMELSTISS--------GENTESQKKSG-- : :.:: :::::::::::: . :. .: : :. :... :. : mKIAA1 LGQGSSSGQSSVLSGISLYDPRTPNAGGKTAEPASDTSAQPKGPEGNGKGSASKAKEPPF 740 750 760 770 780 790 520 530 540 550 560 570 mKIAA2 LKNSDKNQPSPGEVIVPQNTTANLEVPVDGPVDMQTDILRSADKVQVP-------AVHSL ...: .:: :.. . :... . : : .:... : .::.: mKIAA1 VRKSALEQPETGKASTDGATATDRYNSYNRPRPKATAAPTAASSTPPPEGATPQPGVHNL 800 810 820 830 840 850 580 590 600 610 620 mKIAA2 PIQALTGLLRPPYSDPRQAREPGQASPTPDEETDDKPLKEVFKTFDPTASPFC :. .: : ..: . . :. ::. . : : ::.::: ::::::::: mKIAA1 PVPTLFGTVKPAPKTGTGSPFAGN-SPAREGEQDAGSLKDVFKGFDPTASPFCQ 860 870 880 890 900 910 623 residues in 1 query sequences 1768394 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:58:14 2006 done: Mon Mar 27 10:58:14 2006 Scan time: 0.830 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]