# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mnh05075.fasta.nr -Q ../query/mKIAA0653.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0653, 177 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920255 sequences Expectation_n fit: rho(ln(x))= 5.1938+/-0.000183; mu= 7.0288+/- 0.010 mean_var=70.3094+/-13.416, 0's: 35 Z-trim: 38 B-trim: 6 in 1/64 Lambda= 0.152956 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|15214053|sp|Q9JHJ8.1|ICOSL_MOUSE RecName: Full= ( 322) 1060 242.4 4.9e-62 gi|15011418|gb|AAK77544.1|AF394451_1 B7-like prote ( 347) 1038 237.5 1.5e-60 gi|149043609|gb|EDL97060.1| similar to B7-like pro ( 276) 789 182.5 4.4e-44 gi|109509898|ref|XP_001079346.1| PREDICTED: simila ( 300) 724 168.2 9.7e-40 gi|109509284|ref|XP_574731.2| PREDICTED: similar t ( 473) 716 166.6 4.8e-39 gi|74193731|dbj|BAE22807.1| unnamed protein produc ( 101) 651 151.8 2.9e-35 gi|149043610|gb|EDL97061.1| similar to B7-like pro ( 282) 576 135.5 6.3e-30 gi|149742301|ref|XP_001490589.1| PREDICTED: simila ( 371) 489 116.4 4.7e-24 gi|76608584|ref|XP_584543.2| PREDICTED: similar to ( 334) 439 105.3 9.1e-21 gi|119629851|gb|EAX09446.1| inducible T-cell co-st ( 185) 422 101.4 7.6e-20 gi|221039782|dbj|BAH11654.1| unnamed protein produ ( 217) 422 101.5 8.7e-20 gi|114684745|ref|XP_531578.2| PREDICTED: similar t ( 309) 423 101.8 9.9e-20 gi|19855066|sp|O75144.2|ICOSL_HUMAN RecName: Full= ( 302) 422 101.6 1.1e-19 gi|74001527|ref|XP_544918.2| PREDICTED: similar to ( 289) 419 100.9 1.7e-19 gi|221045740|dbj|BAH14547.1| unnamed protein produ ( 217) 417 100.4 1.9e-19 gi|221045674|dbj|BAH14514.1| unnamed protein produ ( 217) 416 100.1 2.2e-19 gi|6983944|gb|AAF34739.1|AF199028_1 B7-like protei ( 309) 415 100.0 3.4e-19 gi|119629852|gb|EAX09447.1| inducible T-cell co-st ( 473) 413 99.7 6.4e-19 gi|126325489|ref|XP_001377700.1| PREDICTED: simila ( 294) 317 78.4 1e-12 gi|149633875|ref|XP_001512359.1| PREDICTED: simila ( 488) 304 75.7 1.1e-11 gi|2462297|emb|CAA70058.1| ICOS ligand [Gallus gal ( 296) 275 69.1 6.5e-10 gi|224042593|ref|XP_002190055.1| PREDICTED: simila ( 431) 270 68.1 1.9e-09 gi|149691788|ref|XP_001493711.1| PREDICTED: simila ( 317) 185 49.3 0.00065 gi|109081805|ref|XP_001093957.1| PREDICTED: simila ( 316) 184 49.1 0.00076 gi|37181811|gb|AAQ88709.1| B7 hlog [Homo sapiens] ( 316) 184 49.1 0.00076 gi|13194193|gb|AAK15438.1| costimulatory molecule ( 316) 183 48.8 0.00088 gi|149635502|ref|XP_001507561.1| PREDICTED: simila ( 212) 175 47.0 0.0022 gi|81915192|sp|Q8VE98.1|CD276_MOUSE RecName: Full= ( 316) 176 47.3 0.0026 gi|81912068|sp|Q7TPB4.1|CD276_RAT RecName: Full=CD ( 316) 174 46.9 0.0035 gi|119902042|ref|XP_869501.2| PREDICTED: CD276 mol ( 728) 178 48.0 0.0037 gi|126272456|ref|XP_001379085.1| PREDICTED: simila ( 231) 172 46.3 0.0037 >>gi|15214053|sp|Q9JHJ8.1|ICOSL_MOUSE RecName: Full=ICOS (322 aa) initn: 1060 init1: 1060 opt: 1060 Z-score: 1270.0 bits: 242.4 E(): 4.9e-62 Smith-Waterman score: 1060; 100.000% identity (100.000% similar) in 162 aa overlap (16-177:161-322) 10 20 30 40 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQERTYTCMSKNG :::::::::::::::::::::::::::::: gi|152 QDTQEFTCRVFMNTATELVKILEEVVRLRVAANFSTPVISTSDSSNPGQERTYTCMSKNG 140 150 160 170 180 190 50 60 70 80 90 100 mKIAA0 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH 200 210 220 230 240 250 110 120 130 140 150 160 mKIAA0 QNITSISQAESFTGNNTKNPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 QNITSISQAESFTGNNTKNPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTG 260 270 280 290 300 310 170 mKIAA0 PKTVQLELTDHA :::::::::::: gi|152 PKTVQLELTDHA 320 >>gi|15011418|gb|AAK77544.1|AF394451_1 B7-like protein G (347 aa) initn: 1038 init1: 1038 opt: 1038 Z-score: 1243.3 bits: 237.5 E(): 1.5e-60 Smith-Waterman score: 1038; 99.375% identity (100.000% similar) in 160 aa overlap (16-175:161-320) 10 20 30 40 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQERTYTCMSKNG :::::::::::::::::::::::::::::: gi|150 QDTQEFTCRVFMNTATELVKILEEVVRLRVAANFSTPVISTSDSSNPGQERTYTCMSKNG 140 150 160 170 180 190 50 60 70 80 90 100 mKIAA0 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|150 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSHGDVLCCVENVALH 200 210 220 230 240 250 110 120 130 140 150 160 mKIAA0 QNITSISQAESFTGNNTKNPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 QNITSISQAESFTGNNTKNPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTG 260 270 280 290 300 310 170 mKIAA0 PKTVQLELTDHA :::::::::: gi|150 PKTVQLELTDTWAPVPYQDYLIPRYLMSPCLKTRGLP 320 330 340 >>gi|149043609|gb|EDL97060.1| similar to B7-like protein (276 aa) initn: 778 init1: 605 opt: 789 Z-score: 947.8 bits: 182.5 E(): 4.4e-44 Smith-Waterman score: 789; 74.699% identity (87.349% similar) in 166 aa overlap (16-177:111-276) 10 20 30 40 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQERTYTCMSKNG :::::::::::: ::.::::::.::::::: gi|149 PQDTQEFKCLVFRMSTVLGKALEEVVRLRVAANFSTPVISTSGSSDPGQERTFTCMSKNG 90 100 110 120 130 140 50 60 70 80 90 100 mKIAA0 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH :::::::::: :::.::: .:::::::::.::::::.::::.::: . ::.::::::::: gi|149 YPEPNLYWINRTDNTLIDETLQNNTVYLNELGLYDVVSTLRIPWTPHVDVICCVENVALH 150 160 170 180 190 200 110 120 130 140 150 160 mKIAA0 QNITSISQAESFTGN-NTKNPQETHNNELKVLVPVLAVLAAAAFVSFII--YR-RTRPHR :::::::.:.::::. ::. ::: : . ::: :::.: :.. : ::: :: : :: . gi|149 QNITSISRADSFTGSMNTERPQEIHREATKVLFYVLAALLAVVVVIFIIVLYRCRRRPCQ 210 220 230 240 250 260 170 mKIAA0 SYTGPKTVQLELTDHA :::::..::::::::. gi|149 SYTGPRAVQLELTDHS 270 >>gi|109509898|ref|XP_001079346.1| PREDICTED: similar to (300 aa) initn: 719 init1: 605 opt: 724 Z-score: 869.7 bits: 168.2 E(): 9.7e-40 Smith-Waterman score: 724; 74.675% identity (86.364% similar) in 154 aa overlap (16-165:142-295) 10 20 30 40 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQERTYTCMSKNG :::::::::::: ::.::::::.::::::: gi|109 PQDTQEFKCLVFRMSTVLGKALEEVVRLRVAANFSTPVISTSGSSDPGQERTFTCMSKNG 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH :::::::::: :::.::: .:::::::::.::::::.::::.::: . ::.::::::::: gi|109 YPEPNLYWINRTDNTLIDETLQNNTVYLNELGLYDVVSTLRIPWTPHVDVICCVENVALH 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA0 QNITSISQAESFTGN-NTKNPQETHNNELKVLVPVLAVLAAAAFVSFII--YR-RTRPHR :::::::.:.::::. ::. ::: : . ::: :::.: :.. : ::: :: : :: . gi|109 QNITSISRADSFTGSMNTERPQEIHREATKVLFYVLAALLAVVVVIFIIVLYRCRRRPCQ 240 250 260 270 280 290 170 mKIAA0 SYTGPKTVQLELTDHA :::: gi|109 SYTGLHETC 300 >>gi|109509284|ref|XP_574731.2| PREDICTED: similar to IC (473 aa) initn: 738 init1: 605 opt: 716 Z-score: 857.4 bits: 166.6 E(): 4.8e-39 Smith-Waterman score: 716; 74.510% identity (86.275% similar) in 153 aa overlap (16-164:240-392) 10 20 30 40 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQERTYTCMSKNG :::::::::::: ::.::::::.::::::: gi|109 PQDTQEFKCLVFRMSTVLGKALEEVVRLRVAANFSTPVISTSGSSDPGQERTFTCMSKNG 210 220 230 240 250 260 50 60 70 80 90 100 mKIAA0 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH :::::::::: :::.::: .:::::::::.::::::.::::.::: . ::.::::::::: gi|109 YPEPNLYWINRTDNTLIDETLQNNTVYLNELGLYDVVSTLRIPWTPHVDVICCVENVALH 270 280 290 300 310 320 110 120 130 140 150 160 mKIAA0 QNITSISQAESFTGN-NTKNPQETHNNELKVLVPVLAVLAAAAFVSFII--YR-RTRPHR :::::::.:.::::. ::. ::: : . ::: :::.: :.. : ::: :: : :: . gi|109 QNITSISRADSFTGSMNTERPQEIHREATKVLFYVLAALLAVVVVIFIIVLYRCRRRPCQ 330 340 350 360 370 380 170 mKIAA0 SYTGPKTVQLELTDHA ::: gi|109 SYTALHRVNGIHVAQVPPSTQEEIENNCASACGRPGRLGGSGGGGGGGGGGSLPRDAGSQ 390 400 410 420 430 440 >>gi|74193731|dbj|BAE22807.1| unnamed protein product [M (101 aa) initn: 651 init1: 651 opt: 651 Z-score: 789.4 bits: 151.8 E(): 2.9e-35 Smith-Waterman score: 651; 99.010% identity (100.000% similar) in 101 aa overlap (77-177:1-101) 50 60 70 80 90 100 mKIAA0 PEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALHQ :::::::::::::::::::::::::::::: gi|741 GLYDVISTLRLPWTSRGDVLCCVENVALHQ 10 20 30 110 120 130 140 150 160 mKIAA0 NITSISQAESFTGNNTKNPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTGP ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 NITSISRAESFTGNNTKNPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTGP 40 50 60 70 80 90 170 mKIAA0 KTVQLELTDHA ::::::::::: gi|741 KTVQLELTDHA 100 >>gi|149043610|gb|EDL97061.1| similar to B7-like protein (282 aa) initn: 576 init1: 576 opt: 576 Z-score: 693.6 bits: 135.5 E(): 6.3e-30 Smith-Waterman score: 576; 84.848% identity (94.949% similar) in 99 aa overlap (16-114:142-240) 10 20 30 40 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQERTYTCMSKNG :::::::::::: ::.::::::.::::::: gi|149 PQDTQEFKCLVFRMSTVLGKALEEVVRLRVAANFSTPVISTSGSSDPGQERTFTCMSKNG 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH :::::::::: :::.::: .:::::::::.::::::.::::.::: . ::.::::::::: gi|149 YPEPNLYWINRTDNTLIDETLQNNTVYLNELGLYDVVSTLRIPWTPHVDVICCVENVALH 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA0 QNITSISQAESFTGNNTKNPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTG :::::::.: gi|149 QNITSISRAGEVQAGEAQAGEAQAGEAQAGEAQAGEAQAGEAQAGEAQAGE 240 250 260 270 280 >>gi|149742301|ref|XP_001490589.1| PREDICTED: similar to (371 aa) initn: 479 init1: 429 opt: 489 Z-score: 588.2 bits: 116.4 E(): 4.7e-24 Smith-Waterman score: 496; 49.398% identity (71.687% similar) in 166 aa overlap (16-171:149-314) 10 20 30 40 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQERTYTCMSKNG :::.: ::.: .. . .: :.:: : :: gi|149 PQDAQKFKCLVFRKSLGPMEILQVVITLNVAANYSMPVVSIPSAPSQDKELTFTCTSTNG 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH ::.::.:::: :::::.: ::::::: ::. :::::.: :.. :. .: ::.::: :: gi|149 YPRPNVYWINKTDNSLLDEALQNNTVSLNERGLYDVVSILKIQWSPNVNVGCCIENVLLH 180 190 200 210 220 230 110 120 130 140 150 mKIAA0 QNITSISQAESFTGNN---TKNPQETHNNELKVLVPVLAVLAAAAFVSFII--YRRTR-- ::.: ::.: .::.. :..: :::... ..: :::.:: :. :. . :.: gi|149 QNLTVSSQTEMLTGTKDSITEKPTETHEERNRALFSVLAILALAVAVAVATGWMCRSRCL 240 250 260 270 280 290 160 170 mKIAA0 ---PHRSYTGPKTVQLELTDHA :.. ::: .: : gi|149 AAGPRQELTGPISVVLTSMGPCSVVLTSMGPCSVVLTSMRPCSVVLIPTGPISVVLTPAA 300 310 320 330 340 350 >>gi|76608584|ref|XP_584543.2| PREDICTED: similar to ind (334 aa) initn: 410 init1: 338 opt: 439 Z-score: 529.2 bits: 105.3 E(): 9.1e-21 Smith-Waterman score: 439; 46.386% identity (72.289% similar) in 166 aa overlap (16-173:139-299) 10 20 30 40 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQERTYTCMSKNG :::.: ::.: . . .: :.:: : :: gi|766 PQDEQKFNCLVFRKSLELKKILEVAVTLHVAANYSMPVVS---GPSQDEELTFTCTSTNG 110 120 130 140 150 160 50 60 70 80 90 100 mKIAA0 YPEPNLYWINTTDNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALH ::.::.:::: ::::..:.::::::: :: :::::.:.::. : . .: ::.::: :: gi|766 YPRPNVYWINKTDNSVLDSALQNNTVSLNARGLYDVVSVLRIGRTPHVNVGCCIENVLLH 170 180 190 200 210 220 110 120 130 140 150 mKIAA0 QNITSISQAESFTGNNTK--------NPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRT ::.:: .:.:.:::.. . .:. :.. ..::. ::::.. :... . : gi|766 QNLTS-GQTETFTGTKDSITEDPVDGSPSGKHQQVFSVLA-VLAVIVLLALATGWLCRSR 230 240 250 260 270 280 160 170 mKIAA0 RPHRSYTGPKTVQLELTDHA : .: :: .... .: gi|766 CPPKSQTGAQVARPKLALAGDSRPAAAWYRSRFTPEACPRGPSWRMRDAAC 290 300 310 320 330 >>gi|119629851|gb|EAX09446.1| inducible T-cell co-stimul (185 aa) initn: 378 init1: 335 opt: 422 Z-score: 512.6 bits: 101.4 E(): 7.6e-20 Smith-Waterman score: 422; 47.059% identity (68.235% similar) in 170 aa overlap (16-176:18-184) 10 20 30 40 50 mKIAA0 TSPLVKPPSPLPPFPAANFSTPVISTSDSSNPGQ-ERTYTCMSKNGYPEPNLYWINTT :::::.::.:. : :.: : :.:: : ::::.::.:::: : gi|119 MRLGSPGLLFLLFSSLRAANFSVPVVSAPHS--PSQDELTFTCTSINGYPRPNVYWINKT 10 20 30 40 50 60 70 80 90 100 110 mKIAA0 DNSLIDTALQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALHQNITSISQAESF ::::.: ::::.::.:: :::::.:.::. : .. ::.::: :.::.: ::. . gi|119 DNSLLDQALQNDTVFLNMRGLYDVVSVLRIARTPSVNIGCCIENVLLQQNLTVGSQTGND 60 70 80 90 100 110 120 130 140 150 160 mKIAA0 TGNN---TKNPQET--HNNELKVLVPVLAVLAAAAF-VSFIIYRRTRPHRSYTGPKTV-- :. :.:: : .: .. :: .:...: .... : : ::.: .: gi|119 IGERDKITENPVSTGEKNAATWSILAVLCLLVVVAVAIGWVCRDRCLQH-SYAGAWAVSP 120 130 140 150 160 170 170 mKIAA0 QLELTDHA . ::: : gi|119 ETELTGHV 180 177 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 17:48:16 2009 done: Sun Mar 15 17:52:38 2009 Total Scan time: 629.410 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]