FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4009.ptfa, 381 aa
 vs ./tmplib.26680 library

1768636 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.9214+/-0.00668; mu= 2.0546+/- 0.447
 mean_var=203.4970+/-47.230, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.0899

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0075  ( 321 res)   mpm05150                   ( 321)  791  114 1.2e-26


>>mKIAA0075  ( 321 res)   mpm05150                        (321 aa)
 initn: 887 init1: 400 opt: 791  Z-score: 571.0  bits: 114.1 E(): 1.2e-26
Smith-Waterman score: 864;  46.110% identity (51.447% ungapped) in 347 aa overlap (41-381:2-318)

               20        30        40         50        60         
mKIAA4 FELMSAGLLQNLWLGSAHSCLLEVKRRLDLETDHQYLA-GSSGPFRGRGRHPGKGVKSPG
                                     :. ::::. : . : .:.::   ..  :: 
mKIAA0                              GESGHQYLSDGLKTP-KGKGRAALRSPDSPK
                                            10         20        30

      70        80        90       100       110       120         
mKIAA4 EKSRYETSLNLTTKRFLELLSRSADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLIAKK
       .:.::.:::.: ::.:..:::.: :::.::: ::::::::::::::::::::::.:: ::
mKIAA0 KKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKK
               40        50        60        70        80        90

     130       140         150       160       170       180       
mKIAA4 SKNHIQWLGSHTMV--GIGKRLEGLTQDLQQLQESEQQLDHLMHICTTQLQLLSEDSDTQ
       :::..::.:       :.  . .::.... .:.. :..::.:.. :: .:.::.:::..:
mKIAA0 SKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQ
              100       110       120       130       140       150

       190       200       210       220       230       240       
mKIAA4 RLAYVTCQDLRSIADPAEQMVIVIKAPPETQLQAVDSSETFQISLKSKQGPIDVFLCPEE
       :::::: ::.:.:.   .: :::.::::::.:.. :: :..:: : : ::::.:.:::::
mKIAA0 RLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLASTQGPIEVYLCPEE
              160       170       180       190       200       210

       250       260       270       280       290       300       
mKIAA4 SADGISPGKTSCQETSSGEDRTADSGPAGPPPSPPSTSPALDPSQSLLGLEQEAVLPRMG
       .     : ::. :. .            :  :.: : . : . :               :
mKIAA0 TETH-RPMKTNNQDHN------------GNIPKPTSKDLASNNS---------------G
               220                   230       240                 

       310       320       330       340       350       360       
mKIAA4 HLRVPMEEDQLSPLVAADSLLEHVKEDFSGLLPGEFISLSPPHEALDYHFGLEEGEGIRD
       :    .   .::::..  .::....... . : : :..: ::    :: ..: : ::: :
mKIAA0 HSDCSVSTANLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISD
            250       260       270       280       290       300  

       370          380    
mKIAA4 LFDC-DFGDLTPL--DF   
       :::  :.  : ::  ::   
mKIAA0 LFDAYDLEKL-PLVEDFMCS
            310        320 




381 residues in 1 query   sequences
1768636 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:09 2006 done: Mon Mar 27 10:59:10 2006
 Scan time:  0.630 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]