FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0060.ptfa, 274 aa
 vs ./tmplib.26680 library

1768743 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.6339+/-0.00389; mu= 17.6523+/- 0.261
 mean_var=68.1933+/-15.492, 0's: 0 Z-trim: 1  B-trim: 8 in 1/35
 Lambda= 0.1553

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4008  ( 149 res)   mib36077                   ( 149)  765  180   8e-47


>>mKIAA4008  ( 149 res)   mib36077                        (149 aa)
 initn: 765 init1: 765 opt: 765  Z-score: 933.0  bits: 179.5 E(): 8e-47
Smith-Waterman score: 765;  91.935% identity (91.935% ungapped) in 124 aa overlap (119-242:24-147)

       90       100       110       120       130       140        
mKIAA0 THILDGNAADLQAECDAFEEKIQAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLA
                                     :. ::::::::::::::::::::::.::::
mKIAA4        NLRKYSICLKPCLFHVYMSVHICFLKGIGPDGHIAFNEPGSSLVSRTRLKTLA
                      10        20        30        40        50   

      150       160       170       180       190       200        
mKIAA0 MDTILANARFFDGDLAKVPTMALTVGVGTVMDAKEVMILITGAHKAFALYKAIEEGVNHM
       ::::::::..:::::.:::::::::::::::::.::::::::::::::::::.:::::::
mKIAA4 MDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAMEEGVNHM
            60        70        80        90       100       110   

      210       220       230       240       250       260        
mKIAA0 WTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKEIQKSQSA
       ::::::::::::.:::::::::::.:::::::::                          
mKIAA4 WTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGEH                        
           120       130       140                                 

      270    
mKIAA0 KKPYSD




274 residues in 1 query   sequences
1768743 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:26 2006 done: Mon Mar 27 10:11:27 2006
 Scan time:  0.480 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]