FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0006.ptfa, 302 aa
 vs ./tmplib.26680 library

1768715 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.6827+/-0.00583; mu= 6.4061+/- 0.390
 mean_var=164.8622+/-38.316, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0999

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0142  ( 809 res)   mbg20462                   ( 809)  333   59 7.2e-10


>>mKIAA0142  ( 809 res)   mbg20462                        (809 aa)
 initn: 574 init1: 316 opt: 333  Z-score: 269.5  bits: 59.3 E(): 7.2e-10
Smith-Waterman score: 711;  52.340% identity (62.437% ungapped) in 235 aa overlap (1-204:507-734)

                                             10        20        30
mKIAA0                               FLLFSSVLIMLSASPRMSGFMYQGKIPIAG
                                     .::: ..:.:::::::::::.::::.: .:
mKIAA0 GDDIKTLGSVTYMSQVTIQCAGSEEKNERYLLLFPNLLLMLSASPRMSGFIYQGKLPTTG
        480       490       500       510       520       530      

               40        50        60        70                    
mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK------------
       :....:.. :.    :::.:: .:::.: :...::..::.:.:.. ::            
mKIAA0 MTITKLEDSENHRNAFEISGSMIERILVSCTSQQDLHEWVEHLQKQTKVTSVSNPTIKPH
        540       550       560       570       580       590      

                   80        90         100            110         
mKIAA0 ------------GPTSCGSLSKTSSSSCSTHS--SFSSTGQPR-----GPLEPPQIIKPW
                    :.:  . ::  . . . :.    :  : :.     ::::::.  :::
mKIAA0 SVPSHTLPSHPLTPSSKHADSKPVALTPAYHTLPHPSHHGTPHTTISWGPLEPPKTPKPW
        600       610       620       630       640       650      

     120       130       140       150       160       170         
mKIAA0 SLSCLRPAPPLRPSAALGYKERMSYILKESSKSPKTMKKFLHKRKTERKASEEEYVIRKS
       ::::::::::::::::: ::: .:       ::::::::.: ::: ::: :.::...:::
mKIAA0 SLSCLRPAPPLRPSAALCYKEDLS-------KSPKTMKKLLPKRKPERKPSDEEFAVRKS
        660       670       680              690       700         

     180       190       200       210       220       230         
mKIAA0 TAALEEDAQILKVIEAYCTSASFQQGTRKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKS
       :::::::::::::::::::::. .:                                   
mKIAA0 TAALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTDLMHNHVLADDDQSSLDSLGRRSSLS
     710       720       730       740       750       760         




302 residues in 1 query   sequences
1768715 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:10:22 2006 done: Mon Mar 27 10:10:23 2006
 Scan time:  0.540 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]