# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mng13302.fasta.nr -Q ../query/mKIAA0006.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0006, 302 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920466 sequences Expectation_n fit: rho(ln(x))= 5.4747+/-0.00019; mu= 8.6898+/- 0.011 mean_var=96.1067+/-18.363, 0's: 37 Z-trim: 42 B-trim: 254 in 1/64 Lambda= 0.130827 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|76364082|sp|Q8K4I3.1|ARHG6_MOUSE RecName: Full= ( 771) 1945 377.3 5e-102 gi|76364083|sp|Q5XXR3.1|ARHG6_RAT RecName: Full=Rh ( 772) 1889 366.7 7.6e-99 gi|123218403|emb|CAM15574.1| Rac/Cdc42 guanine nuc ( 788) 1878 364.6 3.3e-98 gi|149755741|ref|XP_001489904.1| PREDICTED: simila ( 776) 1818 353.3 8.3e-95 gi|21708146|gb|AAH33768.1| Similar to Rac/Cdc42 gu ( 320) 1809 351.2 1.4e-94 gi|57208605|emb|CAI42903.1| Rac/Cdc42 guanine nucl ( 622) 1809 351.5 2.3e-94 gi|221040972|dbj|BAH12163.1| unnamed protein produ ( 649) 1809 351.5 2.4e-94 gi|31873282|emb|CAD97632.1| hypothetical protein [ ( 776) 1809 351.6 2.7e-94 gi|17371603|sp|Q15052.2|ARHG6_HUMAN RecName: Full= ( 776) 1809 351.6 2.7e-94 gi|109132455|ref|XP_001083544.1| PREDICTED: Rac/Cd ( 776) 1808 351.4 3.1e-94 gi|74008535|ref|XP_866362.1| PREDICTED: similar to ( 622) 1774 344.9 2.2e-92 gi|74008533|ref|XP_852793.1| PREDICTED: similar to ( 775) 1774 345.0 2.6e-92 gi|194680183|ref|XP_870250.3| PREDICTED: similar t ( 776) 1771 344.4 3.9e-92 gi|149410993|ref|XP_001514136.1| PREDICTED: simila ( 771) 1569 306.3 1.2e-80 gi|126342501|ref|XP_001363186.1| PREDICTED: simila ( 777) 1526 298.2 3.2e-78 gi|224097260|ref|XP_002189561.1| PREDICTED: Rac/Cd ( 764) 1525 298.0 3.6e-78 gi|76364081|sp|Q5ZLR6.1|ARHG6_CHICK RecName: Full= ( 764) 1522 297.4 5.4e-78 gi|27696640|gb|AAH43505.1| ARHGEF6 protein [Homo s ( 538) 1329 260.8 3.9e-67 gi|26333763|dbj|BAC30599.1| unnamed protein produc ( 622) 1034 205.2 2.5e-50 gi|148710221|gb|EDL42167.1| Rac/Cdc42 guanine nucl ( 809) 1014 201.6 4.1e-49 gi|149015803|gb|EDL75127.1| rCG39258, isoform CRA_ ( 482) 964 191.9 2e-46 gi|148710223|gb|EDL42169.1| Rac/Cdc42 guanine nucl ( 646) 954 190.1 8.9e-46 gi|123218405|emb|CAM15576.1| Rac/Cdc42 guanine nuc ( 483) 948 188.9 1.6e-45 gi|149015802|gb|EDL75126.1| rCG39258, isoform CRA_ ( 647) 921 183.9 6.7e-44 gi|189528035|ref|XP_686581.3| PREDICTED: similar t ( 795) 910 181.9 3.3e-43 gi|194222053|ref|XP_001916719.1| PREDICTED: Rho gu ( 646) 871 174.5 4.6e-41 gi|26342753|dbj|BAC35033.1| unnamed protein produc ( 646) 861 172.6 1.7e-40 gi|126337262|ref|XP_001365087.1| PREDICTED: simila ( 646) 861 172.6 1.7e-40 gi|18202066|sp|O55043.1|ARHG7_RAT RecName: Full=Rh ( 646) 858 172.0 2.5e-40 gi|190690363|gb|ACE86956.1| Rho guanine nucleotide ( 646) 855 171.5 3.8e-40 gi|119629548|gb|EAX09143.1| Rho guanine nucleotide ( 646) 855 171.5 3.8e-40 gi|221043142|dbj|BAH13248.1| unnamed protein produ ( 721) 855 171.5 4.1e-40 gi|29792236|gb|AAH50521.1| Rho guanine nucleotide ( 764) 855 171.5 4.2e-40 gi|119629553|gb|EAX09148.1| Rho guanine nucleotide ( 803) 855 171.5 4.4e-40 gi|114650706|ref|XP_509742.2| PREDICTED: Rho guani ( 901) 855 171.6 4.8e-40 gi|194040659|ref|XP_001926031.1| PREDICTED: simila ( 750) 850 170.6 8.1e-40 gi|109745479|gb|ABG46346.1| Rho guanine exchange f ( 643) 817 164.3 5.4e-38 gi|56270520|gb|AAH86736.1| Rho guanine nucleotide ( 799) 817 164.4 6.3e-38 gi|109745507|gb|ABG46347.1| Rho guanine exchange f ( 799) 817 164.4 6.3e-38 gi|2098783|gb|AAB57691.1| p85SPR [Mus musculus] ( 646) 800 161.1 5e-37 gi|7513581|pir||JC5583 85K SH3 domain-containing p ( 646) 798 160.7 6.5e-37 gi|189523434|ref|XP_001923598.1| PREDICTED: hypoth ( 802) 766 154.7 5e-35 gi|47225326|emb|CAG09826.1| unnamed protein produc ( 736) 657 134.1 7.3e-29 gi|148710222|gb|EDL42168.1| Rac/Cdc42 guanine nucl ( 341) 652 132.9 8.1e-29 gi|149015804|gb|EDL75128.1| rCG39258, isoform CRA_ ( 341) 619 126.7 6.1e-27 gi|159163197|pdb|1V61|A Chain A, Solution Structur ( 132) 532 109.8 2.7e-22 gi|47226819|emb|CAG06661.1| unnamed protein produc ( 504) 470 98.7 2.4e-18 gi|10504266|gb|AAG18018.1|AF247655_1 betaPix-c [Mu ( 630) 429 91.0 5.9e-16 gi|10504263|gb|AAG18017.1|AF247654_1 betaPix-b [Mu ( 705) 426 90.5 9.5e-16 gi|148690136|gb|EDL22083.1| Rho guanine nucleotide ( 705) 426 90.5 9.5e-16 >>gi|76364082|sp|Q8K4I3.1|ARHG6_MOUSE RecName: Full=Rho (771 aa) initn: 1945 init1: 1945 opt: 1945 Z-score: 1988.0 bits: 377.3 E(): 5e-102 Smith-Waterman score: 1945; 100.000% identity (100.000% similar) in 302 aa overlap (1-302:470-771) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG :::::::::::::::::::::::::::::: gi|763 GDDIKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAG 440 450 460 470 480 490 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS 500 510 520 530 540 550 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS 560 570 580 590 600 610 160 170 180 190 200 210 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQGTRKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQGTRKDS 620 630 640 650 660 670 220 230 240 250 260 270 mKIAA0 VPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLEEELK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 VPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLEEELK 680 690 700 710 720 730 280 290 300 mKIAA0 SRKDLEKLVRKLLKQTDECIRSESSSKTSILQ :::::::::::::::::::::::::::::::: gi|763 SRKDLEKLVRKLLKQTDECIRSESSSKTSILQ 740 750 760 770 >>gi|76364083|sp|Q5XXR3.1|ARHG6_RAT RecName: Full=Rho gu (772 aa) initn: 1889 init1: 1889 opt: 1889 Z-score: 1930.9 bits: 366.7 E(): 7.6e-99 Smith-Waterman score: 1889; 97.020% identity (99.338% similar) in 302 aa overlap (1-302:471-772) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG :::::::::::::::::::::::::.:::: gi|763 GDDIKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKVPIAG 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS :::.:::::::.:: :::::::::::::::::::::::::::::::::::.::.:::::: gi|763 MVVTRLDEIEGNDCTFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPASCSSLSKTS 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS 570 580 590 600 610 620 160 170 180 190 200 210 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQGTRKDS ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|763 KSPKTMKKFLHKRKTERKTSEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQGTRKDS 630 640 650 660 670 680 220 230 240 250 260 270 mKIAA0 VPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLEEELK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 VPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLEEELK 690 700 710 720 730 740 280 290 300 mKIAA0 SRKDLEKLVRKLLKQTDECIRSESSSKTSILQ :::::::::::::::::: ::.:::::::::: gi|763 SRKDLEKLVRKLLKQTDESIRAESSSKTSILQ 750 760 770 >>gi|123218403|emb|CAM15574.1| Rac/Cdc42 guanine nucleot (788 aa) initn: 984 init1: 957 opt: 1878 Z-score: 1919.6 bits: 364.6 E(): 3.3e-98 Smith-Waterman score: 1878; 97.682% identity (97.682% similar) in 302 aa overlap (1-302:494-788) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG :::::::::::::::::::::::::::::: gi|123 GDDIKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAG 470 480 490 500 510 520 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS 530 540 550 560 570 580 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::::::::::::::::::::::::::::::::::::::::::::::: ::: gi|123 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKE-------ESS 590 600 610 620 630 160 170 180 190 200 210 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQGTRKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQGTRKDS 640 650 660 670 680 690 220 230 240 250 260 270 mKIAA0 VPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLEEELK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 VPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLEEELK 700 710 720 730 740 750 280 290 300 mKIAA0 SRKDLEKLVRKLLKQTDECIRSESSSKTSILQ :::::::::::::::::::::::::::::::: gi|123 SRKDLEKLVRKLLKQTDECIRSESSSKTSILQ 760 770 780 >>gi|149755741|ref|XP_001489904.1| PREDICTED: similar to (776 aa) initn: 1822 init1: 1266 opt: 1818 Z-score: 1858.4 bits: 353.3 E(): 8.3e-95 Smith-Waterman score: 1818; 91.475% identity (97.049% similar) in 305 aa overlap (1-301:471-775) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG :::::.::::::::::::::.::::::::: gi|149 GEDIKTLGNVIFMSQVMVQYGTCEEKEERYFLLFSTVLIMLSASPRMSGFIYQGKIPIAG 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS :.:.:::::::.:: :::::. .::::::::::::::::.::: .: .::.::::::::: gi|149 MMVTRLDEIEGNDCTFEITGNIIERIVVHCNNNQDFQEWLEQLYKLIRGPASCGSLSKTS 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SSSCSAHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS 570 580 590 600 610 620 160 170 180 190 200 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQG----T :::::::::::::::::: :::::::::::::::::::::::::::::::.:::: . gi|149 KSPKTMKKFLHKRKTERKPSEEEYVIRKSTAALEEDAQILKVIEAYCTSANFQQGHGSSA 630 640 650 660 670 680 210 220 230 240 250 260 mKIAA0 RKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLE :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|149 RKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKRMKQCLE 690 700 710 720 730 740 270 280 290 300 mKIAA0 EELKSRKDLEKLVRKLLKQTDECIRSESSSKTSILQ ::::::.:::::::.:::::::::::::::::::: gi|149 EELKSRRDLEKLVRRLLKQTDECIRSESSSKTSILP 750 760 770 >>gi|21708146|gb|AAH33768.1| Similar to Rac/Cdc42 guanin (320 aa) initn: 1813 init1: 1264 opt: 1809 Z-score: 1854.2 bits: 351.2 E(): 1.4e-94 Smith-Waterman score: 1809; 90.820% identity (97.377% similar) in 305 aa overlap (1-301:15-319) 10 20 30 40 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMF ..:::.::::::::::::::.::::::::: ::.:::::::.:: : gi|217 HASDGACEEKEERYLMLFSNVLIMLSASPRMSGFIYQGKIPIAGTVVTRLDEIEGNDCTF 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA0 EITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTSSSSCSTHSSFSSTGQP ::::.::::::::::::::::::.:::::: .::.::.:::::::::::.:::::::::: gi|217 EITGNTVERIVVHCNNNQDFQEWLEQLNRLIRGPASCSSLSKTSSSSCSAHSSFSSTGQP 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA0 RGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESSKSPKTMKKFLHKRKTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 RGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESSKSPKTMKKFLHKRKTE 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA0 RKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQG----TRKDSVPQVLLPEEEKL :: :::::::::::::::::::::::::::::::.:::: :::::.::::::::::: gi|217 RKPSEEEYVIRKSTAALEEDAQILKVIEAYCTSANFQQGHGSSTRKDSIPQVLLPEEEKL 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA0 IIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLEEELKSRKDLEKLVRKL ::::::::::::.::::::::::::::::.:::::::.::::::::::::.:::::::.: gi|217 IIEETRSNGQTIMEEKSLVDTVYALKDEVRELKQENKRMKQCLEEELKSRRDLEKLVRRL 250 260 270 280 290 300 290 300 mKIAA0 LKQTDECIRSESSSKTSILQ :::::::::.::::::::: gi|217 LKQTDECIRGESSSKTSILP 310 320 >>gi|57208605|emb|CAI42903.1| Rac/Cdc42 guanine nucleoti (622 aa) initn: 1813 init1: 1264 opt: 1809 Z-score: 1850.5 bits: 351.5 E(): 2.3e-94 Smith-Waterman score: 1809; 90.820% identity (97.377% similar) in 305 aa overlap (1-301:317-621) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG ..:::.::::::::::::::.::::::::: gi|572 GEDIKNLGNVIFMSQVMVQYGACEEKEERYLMLFSNVLIMLSASPRMSGFIYQGKIPIAG 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS ::.:::::::.:: :::::.::::::::::::::::::.:::::: .::.::.:::::: gi|572 TVVTRLDEIEGNDCTFEITGNTVERIVVHCNNNQDFQEWLEQLNRLIRGPASCSSLSKTS 350 360 370 380 390 400 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 SSSCSAHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS 410 420 430 440 450 460 160 170 180 190 200 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQG----T :::::::::::::::::: :::::::::::::::::::::::::::::::.:::: : gi|572 KSPKTMKKFLHKRKTERKPSEEEYVIRKSTAALEEDAQILKVIEAYCTSANFQQGHGSST 470 480 490 500 510 520 210 220 230 240 250 260 mKIAA0 RKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLE ::::.:::::::::::::::::::::::.::::::::::::::::.:::::::.:::::: gi|572 RKDSIPQVLLPEEEKLIIEETRSNGQTIMEEKSLVDTVYALKDEVRELKQENKRMKQCLE 530 540 550 560 570 580 270 280 290 300 mKIAA0 EELKSRKDLEKLVRKLLKQTDECIRSESSSKTSILQ ::::::.:::::::.::::::::::.::::::::: gi|572 EELKSRRDLEKLVRRLLKQTDECIRGESSSKTSILP 590 600 610 620 >>gi|221040972|dbj|BAH12163.1| unnamed protein product [ (649 aa) initn: 1813 init1: 1264 opt: 1809 Z-score: 1850.3 bits: 351.5 E(): 2.4e-94 Smith-Waterman score: 1809; 90.820% identity (97.377% similar) in 305 aa overlap (1-301:344-648) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG ..:::.::::::::::::::.::::::::: gi|221 GEDIKNLGNVIFMSQVMVQYGACEEKEERYLMLFSNVLIMLSASPRMSGFIYQGKIPIAG 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS ::.:::::::.:: :::::.::::::::::::::::::.:::::: .::.::.:::::: gi|221 TVVTRLDEIEGNDCTFEITGNTVERIVVHCNNNQDFQEWLEQLNRLIRGPASCSSLSKTS 380 390 400 410 420 430 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 SSSCSAHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS 440 450 460 470 480 490 160 170 180 190 200 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQG----T :::::::::::::::::: :::::::::::::::::::::::::::::::.:::: : gi|221 KSPKTMKKFLHKRKTERKPSEEEYVIRKSTAALEEDAQILKVIEAYCTSANFQQGHGSST 500 510 520 530 540 550 210 220 230 240 250 260 mKIAA0 RKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLE ::::.:::::::::::::::::::::::.::::::::::::::::.:::::::.:::::: gi|221 RKDSIPQVLLPEEEKLIIEETRSNGQTIMEEKSLVDTVYALKDEVRELKQENKRMKQCLE 560 570 580 590 600 610 270 280 290 300 mKIAA0 EELKSRKDLEKLVRKLLKQTDECIRSESSSKTSILQ ::::::.:::::::.::::::::::.::::::::: gi|221 EELKSRRDLEKLVRRLLKQTDECIRGESSSKTSILP 620 630 640 >>gi|31873282|emb|CAD97632.1| hypothetical protein [Homo (776 aa) initn: 1813 init1: 1264 opt: 1809 Z-score: 1849.3 bits: 351.6 E(): 2.7e-94 Smith-Waterman score: 1809; 90.820% identity (97.377% similar) in 305 aa overlap (1-301:471-775) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG ..:::.::::::::::::::.::::::::: gi|318 GEDIKNLGNVIFMSQVMVQYGACEEKEERYLMLFSNVLIMLSASPRMSGFIYQGKIPIAG 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS ::.:::::::.:: :::::.::::::::::::::::::.:::::: .::.::.:::::: gi|318 TVVTRLDEIEGNDCTFEITGNTVERIVVHCNNNQDFQEWLEQLNRLIRGPASCSSLSKTS 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|318 SSSCSAHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS 570 580 590 600 610 620 160 170 180 190 200 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQG----T :::::::::::::::::: :::::::::::::::::::::::::::::::.:::: : gi|318 KSPKTMKKFLHKRKTERKPSEEEYVIRKSTAALEEDAQILKVIEAYCTSANFQQGHGSST 630 640 650 660 670 680 210 220 230 240 250 260 mKIAA0 RKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLE ::::.:::::::::::::::::::::::.::::::::::::::::.:::::::.:::::: gi|318 RKDSIPQVLLPEEEKLIIEETRSNGQTIMEEKSLVDTVYALKDEVRELKQENKRMKQCLE 690 700 710 720 730 740 270 280 290 300 mKIAA0 EELKSRKDLEKLVRKLLKQTDECIRSESSSKTSILQ ::::::.:::::::.::::::::::.::::::::: gi|318 EELKSRRDLEKLVRRLLKQTDECIRGESSSKTSILP 750 760 770 >>gi|17371603|sp|Q15052.2|ARHG6_HUMAN RecName: Full=Rho (776 aa) initn: 1813 init1: 1264 opt: 1809 Z-score: 1849.3 bits: 351.6 E(): 2.7e-94 Smith-Waterman score: 1809; 90.820% identity (97.377% similar) in 305 aa overlap (1-301:471-775) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG ..:::.::::::::::::::.::::::::: gi|173 GEDIKNLGNVIFMSQVMVQYGACEEKEERYLMLFSNVLIMLSASPRMSGFIYQGKIPIAG 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS ::.:::::::.:: :::::.::::::::::::::::::.:::::: .::.::.:::::: gi|173 TVVTRLDEIEGNDCTFEITGNTVERIVVHCNNNQDFQEWLEQLNRLIRGPASCSSLSKTS 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 SSSCSAHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS 570 580 590 600 610 620 160 170 180 190 200 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQG----T :::::::::::::::::: :::::::::::::::::::::::::::::::.:::: : gi|173 KSPKTMKKFLHKRKTERKPSEEEYVIRKSTAALEEDAQILKVIEAYCTSANFQQGHGSST 630 640 650 660 670 680 210 220 230 240 250 260 mKIAA0 RKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLE ::::.:::::::::::::::::::::::.::::::::::::::::.:::::::.:::::: gi|173 RKDSIPQVLLPEEEKLIIEETRSNGQTIMEEKSLVDTVYALKDEVRELKQENKRMKQCLE 690 700 710 720 730 740 270 280 290 300 mKIAA0 EELKSRKDLEKLVRKLLKQTDECIRSESSSKTSILQ ::::::.:::::::.::::::::::.::::::::: gi|173 EELKSRRDLEKLVRRLLKQTDECIRGESSSKTSILP 750 760 770 >>gi|109132455|ref|XP_001083544.1| PREDICTED: Rac/Cdc42 (776 aa) initn: 1812 init1: 1259 opt: 1808 Z-score: 1848.2 bits: 351.4 E(): 3.1e-94 Smith-Waterman score: 1808; 90.820% identity (97.377% similar) in 305 aa overlap (1-301:471-775) 10 20 30 mKIAA0 FLLFSSVLIMLSASPRMSGFMYQGKIPIAG ..:::.::::::::::::::.::::::::: gi|109 GEDIKNLGSVIFMSQVMVQYGACEEKEERYLMLFSNVLIMLSASPRMSGFIYQGKIPIAG 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTS ::.:::::::.:: :::::..:::::::::::::::::.:::::: .::.::.:::::: gi|109 TVVTRLDEIEGNDCTFEITGNVVERIVVHCNNNQDFQEWLEQLNRLIRGPASCSSLSKTS 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 SSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SSSCSAHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESS 570 580 590 600 610 620 160 170 180 190 200 mKIAA0 KSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQG----T :::::::::::::::::: :::::::::::::::::::::::::::::::.:::: : gi|109 KSPKTMKKFLHKRKTERKPSEEEYVIRKSTAALEEDAQILKVIEAYCTSANFQQGHGSST 630 640 650 660 670 680 210 220 230 240 250 260 mKIAA0 RKDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLE ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::::: gi|109 RKDSIPQVLLPEEEKLIIEETRSNGQTIMEEKSLVDTVYALKDEVKELKQENKRMKQCLE 690 700 710 720 730 740 270 280 290 300 mKIAA0 EELKSRKDLEKLVRKLLKQTDECIRSESSSKTSILQ ::::::.:::::::.::::::::::.::::::::: gi|109 EELKSRRDLEKLVRRLLKQTDECIRAESSSKTSILP 750 760 770 302 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 10:58:32 2009 done: Thu Mar 12 11:04:13 2009 Total Scan time: 788.680 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]