FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00186.ptfa, 293 aa
 vs ./tmplib.26680 library

1768724 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.0092+/-0.00442; mu= 11.9634+/- 0.295
 mean_var=91.2705+/-21.344, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1342

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0168  ( 331 res)   mfj39332                   ( 331)  252   58 6.1e-10


>>mKIAA0168  ( 331 res)   mfj39332                        (331 aa)
 initn: 128 init1:  72 opt: 252  Z-score: 270.8  bits: 58.3 E(): 6.1e-10
Smith-Waterman score: 252;  26.009% identity (27.885% ungapped) in 223 aa overlap (81-292:110-328)

               60        70        80          90        100       
mFLJ00 FTAKTTFFRNLQSKQPSKNVCKAVEETQHPPTIQ--EIKQKIDSYNSREK-HCLGMK-LS
                                     ::.:  :. . ... ...      :.: ..
mKIAA0 ERIRPPPSSSSWHSGCNLGAQGTTLKPLTMPTVQISEVDMPVEGLETHSPTDSRGLKPVQ
      80        90       100       110       120       130         

        110       120       130       140       150        160     
mFLJ00 EDGTYTGFIKVHLKLRRPVTVPAGIRPQSIYDAIKEVNPAATTDKRTSFYLP-LDAIKQL
       ::       .  . .::  .: ..   . :      .: .   ...:: . :   .. ..
mKIAA0 EDTPQLMRTRSDVGVRRRGNVRTSSDQRRIRRHRFSIN-GHFYNHKTSVFTPAYGSVTNV
     140       150       160       170        180       190        

         170       180       190       200       210       220     
mFLJ00 HISSTTTVSEVIQGLLKKFMVVDNPQKFALFKRIHKDGQVLFQKLSIADYPLYLRLLAGP
       .:.:: :. .:.. ::.:: . .. ..:::.  .: .:.   :.:. .::::  :.: ::
mKIAA0 RINSTMTTPQVLKLLLNKFKIENSAEEFALYV-VHTSGEK--QRLKSSDYPLIARILQGP
      200       210       220       230          240       250     

         230        240            250       260       270         
mFLJ00 DTDVLS-FVLKENETGEVEWDA-----FSIPELQNFLTILEKEEQDKIHQLQKKYNKFRQ
         .. . :....... :: .:.     : .: :..:.  :..::. ....:..::. .: 
mKIAA0 CEQISKVFLMEKDQVEEVTYDVAQYIKFEMPVLKSFIQKLQEEEDREVEKLMRKYTVLRL
         260       270       280       290       300       310     

     280       290     
mFLJ00 KLEEALRESQGKPG  
        ... :.:    :   
mKIAA0 MIRQRLEEIAETPETI
         320       330 




293 residues in 1 query   sequences
1768724 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:07:51 2006 done: Mon Mar 27 10:07:51 2006
 Scan time:  0.550 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]