# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mlj02359.fasta.nr -Q ../query/mFLJ00333.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00333, 72 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920992 sequences Expectation_n fit: rho(ln(x))= 4.6657+/-0.000179; mu= 4.2225+/- 0.010 mean_var=60.6362+/-11.725, 0's: 103 Z-trim: 104 B-trim: 14 in 1/65 Lambda= 0.164706 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148683408|gb|EDL15355.1| Fc receptor-like 5, is ( 507) 497 126.2 3e-27 gi|26354655|dbj|BAC40954.1| unnamed protein produc ( 508) 497 126.2 3e-27 gi|164420689|ref|NP_001106709.1| Fc receptor-like ( 508) 497 126.2 3e-27 gi|30313588|gb|AAO20873.1| BXMAS1-like protein 2 [ ( 582) 497 126.2 3.3e-27 gi|46394831|gb|AAS91578.1| Fc receptor-like protei ( 595) 497 126.2 3.4e-27 gi|164420687|ref|NP_899045.3| Fc receptor-like 5 i ( 596) 497 126.2 3.4e-27 gi|187471182|sp|Q68SN8.2|FCRL5_MOUSE RecName: Full ( 596) 497 126.2 3.4e-27 gi|194238496|ref|XP_001914695.1| PREDICTED: simila ( 538) 236 64.2 1.5e-08 gi|21748534|dbj|BAC03404.1| FLJ00333 protein [Homo ( 437) 229 62.4 4e-08 gi|149048204|gb|EDM00780.1| rCG62831 [Rattus norve ( 475) 228 62.2 5e-08 gi|119573271|gb|EAW52886.1| Fc receptor-like 5, is ( 977) 229 62.7 7.4e-08 gi|71682290|gb|AAI01068.1| Fc receptor-like 5 [Hom ( 977) 229 62.7 7.4e-08 gi|55663393|emb|CAH71427.1| Fc receptor-like 5 [Ho ( 977) 229 62.7 7.4e-08 gi|114560383|ref|XP_524901.2| PREDICTED: Fc recept ( 977) 229 62.7 7.4e-08 gi|90111859|sp|Q96RD9.2|FCRL5_HUMAN RecName: Full= ( 977) 229 62.7 7.4e-08 gi|15277746|gb|AAK93971.1|AF397453_1 Fc receptor-l ( 977) 229 62.7 7.4e-08 gi|14278719|gb|AAK50059.2|AF369794_1 B cell crossl ( 977) 223 61.3 2e-07 gi|194210650|ref|XP_001915572.1| PREDICTED: simila (1080) 219 60.4 4.1e-07 gi|109466987|ref|XP_001073166.1| PREDICTED: simila ( 597) 216 59.5 4.3e-07 gi|109465036|ref|XP_001058446.1| PREDICTED: simila ( 646) 216 59.5 4.6e-07 >>gi|148683408|gb|EDL15355.1| Fc receptor-like 5, isofor (507 aa) initn: 497 init1: 497 opt: 497 Z-score: 645.5 bits: 126.2 E(): 3e-27 Smith-Waterman score: 497; 100.000% identity (100.000% similar) in 72 aa overlap (1-72:436-507) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :::::::::::::::::::::::::::::: gi|148 MAAGITVGLLIMAVGVFLFYCWFSRKAGGKPTSDDSRNPSDSEPQEPTYYNVPACIELQP 410 420 430 440 450 460 40 50 60 70 mFLJ00 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK :::::::::::::::::::::::::::::::::::::::::: gi|148 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK 470 480 490 500 >>gi|26354655|dbj|BAC40954.1| unnamed protein product [M (508 aa) initn: 497 init1: 497 opt: 497 Z-score: 645.5 bits: 126.2 E(): 3e-27 Smith-Waterman score: 497; 100.000% identity (100.000% similar) in 72 aa overlap (1-72:437-508) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :::::::::::::::::::::::::::::: gi|263 MAAGITVGLLIMAVGVFLFYCWFSRKAGGKPTSDDSRNPSDSEPQEPTYYNVPACIELQP 410 420 430 440 450 460 40 50 60 70 mFLJ00 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK :::::::::::::::::::::::::::::::::::::::::: gi|263 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK 470 480 490 500 >>gi|164420689|ref|NP_001106709.1| Fc receptor-like 5 is (508 aa) initn: 497 init1: 497 opt: 497 Z-score: 645.5 bits: 126.2 E(): 3e-27 Smith-Waterman score: 497; 100.000% identity (100.000% similar) in 72 aa overlap (1-72:437-508) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :::::::::::::::::::::::::::::: gi|164 MAAGITVGLLIMAVGVFLFYCWFSRKAGGKPTSDDSRNPSDSEPQEPTYYNVPACIELQP 410 420 430 440 450 460 40 50 60 70 mFLJ00 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK :::::::::::::::::::::::::::::::::::::::::: gi|164 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK 470 480 490 500 >>gi|30313588|gb|AAO20873.1| BXMAS1-like protein 2 [Mus (582 aa) initn: 497 init1: 497 opt: 497 Z-score: 644.7 bits: 126.2 E(): 3.3e-27 Smith-Waterman score: 497; 100.000% identity (100.000% similar) in 72 aa overlap (1-72:511-582) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :::::::::::::::::::::::::::::: gi|303 MAAGITVGLLIMAVGVFLFYCWFSRKAGGKPTSDDSRNPSDSEPQEPTYYNVPACIELQP 490 500 510 520 530 540 40 50 60 70 mFLJ00 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK :::::::::::::::::::::::::::::::::::::::::: gi|303 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK 550 560 570 580 >>gi|46394831|gb|AAS91578.1| Fc receptor-like protein 3 (595 aa) initn: 497 init1: 497 opt: 497 Z-score: 644.5 bits: 126.2 E(): 3.4e-27 Smith-Waterman score: 497; 100.000% identity (100.000% similar) in 72 aa overlap (1-72:524-595) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :::::::::::::::::::::::::::::: gi|463 MAAGITVGLLIMAVGVFLFYCWFSRKAGGKPTSDDSRNPSDSEPQEPTYYNVPACIELQP 500 510 520 530 540 550 40 50 60 70 mFLJ00 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK :::::::::::::::::::::::::::::::::::::::::: gi|463 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK 560 570 580 590 >>gi|164420687|ref|NP_899045.3| Fc receptor-like 5 isofo (596 aa) initn: 497 init1: 497 opt: 497 Z-score: 644.5 bits: 126.2 E(): 3.4e-27 Smith-Waterman score: 497; 100.000% identity (100.000% similar) in 72 aa overlap (1-72:525-596) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :::::::::::::::::::::::::::::: gi|164 MAAGITVGLLIMAVGVFLFYCWFSRKAGGKPTSDDSRNPSDSEPQEPTYYNVPACIELQP 500 510 520 530 540 550 40 50 60 70 mFLJ00 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK :::::::::::::::::::::::::::::::::::::::::: gi|164 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK 560 570 580 590 >>gi|187471182|sp|Q68SN8.2|FCRL5_MOUSE RecName: Full=Fc (596 aa) initn: 497 init1: 497 opt: 497 Z-score: 644.5 bits: 126.2 E(): 3.4e-27 Smith-Waterman score: 497; 100.000% identity (100.000% similar) in 72 aa overlap (1-72:525-596) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :::::::::::::::::::::::::::::: gi|187 MAAGITVGLLIMAVGVFLFYCWFSRKAGGKPTSDDSRNPSDSEPQEPTYYNVPACIELQP 500 510 520 530 540 550 40 50 60 70 mFLJ00 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK :::::::::::::::::::::::::::::::::::::::::: gi|187 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK 560 570 580 590 >>gi|194238496|ref|XP_001914695.1| PREDICTED: similar to (538 aa) initn: 222 init1: 182 opt: 236 Z-score: 310.0 bits: 64.2 E(): 1.5e-08 Smith-Waterman score: 236; 68.421% identity (85.965% similar) in 57 aa overlap (1-55:442-498) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :::: ::.::.:.::::::..::: .:::: gi|194 GVTGGLLSVLGLAAAGLLFFYWLPRKAGRRPTSDLSRSPSNSDPQEPTYHSVPAWVELQP 420 430 440 450 460 470 40 50 60 70 mFLJ00 VYSN-EPE-ENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK :::: .:: :.::::::: : .:.: gi|194 VYSNVNPEGEDVIYTEVRSIQKGNKNAAASTPGLLKNSDSSVIYSQVRVASTPASRPQLL 480 490 500 510 520 530 >>gi|21748534|dbj|BAC03404.1| FLJ00333 protein [Homo sap (437 aa) initn: 166 init1: 166 opt: 229 Z-score: 302.2 bits: 62.4 E(): 4e-08 Smith-Waterman score: 229; 63.158% identity (84.211% similar) in 57 aa overlap (1-55:341-397) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :.:: .:.::::. :::::.:::: :::: gi|217 GVAGGLLSIAGLAAGALLLYCWLSRKAGRKPASDPARSPSDSDSQEPTYHNVPAWEELQP 320 330 340 350 360 370 40 50 60 70 mFLJ00 VYSN-EPE-ENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK ::.: .:. :::.:.::: : ..::: gi|217 VYTNANPRGENVVYSEVRIIQEKKKHAVASDPRHLRNKGSPIIYSEVKVASTPVSGSLFL 380 390 400 410 420 430 >>gi|149048204|gb|EDM00780.1| rCG62831 [Rattus norvegicu (475 aa) initn: 218 init1: 218 opt: 228 Z-score: 300.4 bits: 62.2 E(): 5e-08 Smith-Waterman score: 228; 83.333% identity (100.000% similar) in 36 aa overlap (1-36:438-473) 10 20 30 mFLJ00 PTSDDSRNPSDSEPQEPTYYNVPACIELQP :.::.::.:::.:::::::::.:::::::: gi|149 VIAGITVGLLITAVGVFLSYCWFSRQAGGKPASDESRSPSDAEPQEPTYYNMPACIELQP 410 420 430 440 450 460 40 50 60 70 mFLJ00 VYSNEPEENVIYTEVRRTQPRQKHADQESESPRSRCQMAEKK ::::.: gi|149 VYSNDPPK 470 72 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 06:24:35 2009 done: Fri Mar 13 06:28:14 2009 Total Scan time: 445.740 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]