FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1608.ptfa, 845 aa vs ./tmplib.26680 library 1768172 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.9211+/-0.00926; mu= -16.3035+/- 0.611 mean_var=496.0915+/-120.612, 0's: 0 Z-trim: 15 B-trim: 0 in 0/36 Lambda= 0.0576 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1277 ( 1074 res) mph01932 (1074) 363 45 4.8e-05 mKIAA1091 ( 1217 res) mbg00289 (1217) 294 40 0.0028 >>mKIAA1277 ( 1074 res) mph01932 (1074 aa) initn: 270 init1: 270 opt: 363 Z-score: 182.9 bits: 45.2 E(): 4.8e-05 Smith-Waterman score: 365; 27.820% identity (30.833% ungapped) in 266 aa overlap (31-279:689-945) 10 20 30 40 50 60 mKIAA1 GRPVGRGRAGSAVQRSTERGPRVHEEAPGPWAPGSSKTQRLHLKCMWKWLILGQVALFQI ::: . :.. ..... :. . .. mKIAA1 LKLEKSFKFMREAEDQLKAIPQFCFPDAKDWAPVQEFTSET-----FSFVLTGEDGSRRF 660 670 680 690 700 710 70 80 90 100 mKIAA1 LRCR-----GNSQRT----TVTSYLPWFEVFYKLLNILADYTTKRQ---ESQWNELLETL :: :...: ..: : : .: :.: : . ::. . . :.... mKIAA1 GYCRRLLPGGKGKRLPEVYCIVSRLGCFSLFSKIL----DEVEKRRGISPALVQPLMRSV 720 730 740 750 760 110 120 130 140 150 160 mKIAA1 HRLPIPDPGVSV----HLSVHSYFTVPDSRELPSIPENRNLTEYFVAVDVNNMLHLYASM . :.: : .. : . .. : : : :. .. : ...: ... ..::. mKIAA1 MEAPFPALGKTIIVKNFLPGSGTEVIELCRPLDSRLEHVDFESLFSSLSVRHLVSVFASL 770 780 790 800 810 820 170 180 190 200 210 220 mKIAA1 LYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHL : :::...: .:::::. : :. .:..::. :::.::::::: ..: :.: :.:::. mKIAA1 LLERRVIFIADKLSTLSKCCHAMVALIYPFSWQHTYIPVLPPAMIDIVCSPTPFLIGLLS 830 840 850 860 870 880 230 240 250 260 270 280 mKIAA1 SLMEKVRNMALDDVVILNVDTNTLETPFDDLQS-LPNDVISSLKNRLKKVSTTTGDGVAR : . .:.. :..:..... .. . ..: .: :: . .:.. :.. . . : mKIAA1 SSLPLLRELPLEEVLVVDLINDRFLRQMEDEDSILPRKLQVALEHILEQRNDLACDQDGG 890 900 910 920 930 940 290 300 310 320 330 340 mKIAA1 AFLKAQAAFFGSYRNALKIEPERDPGPQTSRRPEPITVHFGQVRPPRPHVVRRPKSNITV mKIAA1 PLDCVHGPESSSLSEVVSEAFVRFFVEIVGHYPLFLTSGEERSLQREAFRKAVSSKSLRR 950 960 970 980 990 1000 >>mKIAA1091 ( 1217 res) mbg00289 (1217 aa) initn: 174 init1: 144 opt: 294 Z-score: 151.3 bits: 39.5 E(): 0.0028 Smith-Waterman score: 294; 30.675% identity (32.468% ungapped) in 163 aa overlap (104-260:174-333) 80 90 100 110 120 130 mKIAA1 SYLPWFEVFYKLLNILADYTTKRQESQWNELLETLHRLPIPDPGVSVHLS-VHSYFTV-- . ..:...:.: :: :...: :.. . mKIAA1 SFMKACRSVLQQLHQAVTSPQPPPLPLESYIYNVLYEVPLPPPGRSLKFSGVYGPIICQR 150 160 170 180 190 200 140 150 160 170 180 190 mKIAA1 PDSRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAM :.. ::: . . . : : . :.:...:.. : : .::. .. . : . . .:. mKIAA1 PSTNELPLF--DFPVKEVFELLGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITAL 210 220 230 240 250 260 200 210 220 230 240 mKIAA1 LYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALD---DVVILNVDTNT ..:. :::::.:.:: :: . ::.:::.:.: . .. .. : .. ...::.. mKIAA1 MFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDVDNHF 270 280 290 300 310 320 250 260 270 280 290 300 mKIAA1 LETPFDDLQSLPNDVISSLKNRLKKVSTTTGDGVARAFLKAQAAFFGSYRNALKIEPERD .: : .:: ..:: mKIAA1 IELP-EDLPQFPNKLEFVQEVSEILMAFGVPPEGNLHCSESASKLKRIRASELVSDKRNG 330 340 350 360 370 380 845 residues in 1 query sequences 1768172 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:49:26 2006 done: Mon Mar 27 10:49:27 2006 Scan time: 0.940 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]