FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0335.ptfa, 372 aa
 vs ./tmplib.26680 library

1768645 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.1492+/-0.00486; mu= 6.6552+/- 0.325
 mean_var=114.9602+/-26.279, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1196

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1729  ( 976 res)   mpf02083                   ( 976)  273   58 2.8e-09


>>mKIAA1729  ( 976 res)   mpf02083                        (976 aa)
 initn: 277 init1: 253 opt: 273  Z-score: 258.9  bits: 58.0 E(): 2.8e-09
Smith-Waterman score: 290;  26.724% identity (31.525% ungapped) in 348 aa overlap (52-368:592-917)

              30        40        50        60        70        80 
mKIAA0 VKQQNENLPKASLYTLMPDGKQAVFFKCVMPNNTKLLKPKLVQSSTYQHIQPKRPAGAPQ
                                     :. :.   :: .:  . .   :  :. .:.
mKIAA1 RRKIAQLIESCGKPSSLSANSAQRRSIGQAPKLTSKATPKAIQEMSVSLTGPG-PTPGPS
             570       580       590       600       610        620

              90       100       110       120       130           
mKIAA0 KILVKIFNPVLSMSAFNNLSASNSASSFQKEIVPSKPTVHGEQKEPETSRN---ALPVLV
              .:.  ..  :. : ..: .   ... :.  ...  . : ...:.   : :::.
mKIAA1 ------VGPL--QKPPNEDSITGSRQLVPQQVCPQFISANDGKMENRVTRKTPVATPVLI
                      630       640       650       660       670  

       140           150       160       170       180       190   
mKIAA0 -HG----LMPANETVHSSTTACPGSSEEPVYISERSETRVLRGKANCAVERNFNKRK--T
        .:    .. ..: .:   ..:    . :: :   ::...      : .... .  .  :
mKIAA1 PKGAVLRVLNSSEDAHIIEATC----DTPVSIPC-SEAQLAGTLPFCPMKQTGSGSQPLT
            680       690           700        710       720       

             200       210          220       230                  
mKIAA0 CKNKFAKIKTRIDQDSETAFVSRNRSCK---RKYIDNYQEPP------RKKSTLNR----
       :..  : ..  .. . .    ...  :.   .:..  :.  :      :.   ..:    
mKIAA1 CRSGPADMSPGLETSLRPKSRKEDTICSATAKKMVPVYSTAPGSSDSIRQGRPVSRNLTV
       730       740       750       760       770       780       

         240          250         260       270       280       290
mKIAA0 ---KGKERASAED---VQEAFG--FSRPRLPKDSSRTLRLFPFSSKQLVKCPRRNQPVVV
          : :.  :..    .:   :  :. :    . .: :::.  .  ::.:::::::::.:
mKIAA1 SKNKTKQVNSTKKKNKMQANPGRYFKDPPSFFQVARQLRLIAAKPDQLIKCPRRNQPVIV
       790       800       810       820       830       840       

              300       310       320       330       340       350
mKIAA0 LNHPDADTPEVERVMKTIAKFNGHVLKVSLSQTTINALLKPVSNTSETTYNDFSKRQKML
       :::::.:.:::  :::.: :..:.:::: ::. :    :       . ::.. ..     
mKIAA1 LNHPDVDSPEVTNVMKVINKYKGNVLKVVLSERT-RCQLGVRRYHMRLTYQNVAE-----
       850       860       870       880        890       900      

              360       370                                        
mKIAA0 KPVNSVKERFVLKLTLKKNKQK                                      
         .: .:....::. :::                                          
mKIAA1 --TNHMKRQMMLKMKLKKVHKNNYQVVGSMPDDPAQCVFKCWFCGRLYEDQEEWMSHGQR
               910       920       930       940       950         




372 residues in 1 query   sequences
1768645 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:18:02 2006 done: Mon Mar 27 10:18:03 2006
 Scan time:  0.600 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]