FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0636.ptfa, 560 aa vs ./tmplib.26680 library 1768457 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.0994+/-0.00402; mu= 18.1740+/- 0.268 mean_var=75.5320+/-17.461, 0's: 0 Z-trim: 12 B-trim: 8 in 1/35 Lambda= 0.1476 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4217 ( 310 res) mbh03361 ( 310) 918 205 8.4e-54 mKIAA1342 ( 499 res) mid23032 ( 499) 163 44 2.7e-05 mKIAA0538 ( 826 res) msh37311 ( 826) 156 43 0.0001 mKIAA0559 ( 1592 res) mbg01260 (1592) 152 43 0.00028 mKIAA0985 ( 684 res) mbp05185 ( 684) 142 40 0.00073 mKIAA4194 ( 320 res) mbg12940 ( 320) 126 36 0.0049 mKIAA4254 ( 933 res) mbg00605 ( 933) 130 38 0.0052 >>mKIAA4217 ( 310 res) mbh03361 (310 aa) initn: 707 init1: 562 opt: 918 Z-score: 1058.3 bits: 204.8 E(): 8.4e-54 Smith-Waterman score: 918; 54.511% identity (57.312% ungapped) in 266 aa overlap (301-558:39-299) 280 290 300 310 320 330 mKIAA0 PVEYECINEKKRQKKKSYKNSGVISVKHCEITVECTFLDYIMGGCQLNFTVGVDFTGSNG . : ::.::: :: ::::::..:::.::: mKIAA4 RLPLFCYLSSAYRSGRAASCVPQVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNG 10 20 30 40 50 60 340 350 360 370 380 390 mKIAA0 DPSSPDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPM .: .: ::::.:: .. : :. .:: .:::::.::.:::.::::..::. ..::.::. mKIAA4 NPLQPTSLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPL 70 80 90 100 110 120 400 410 420 430 440 450 mKIAA0 NFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVL : : .: : ::.:..:.: : ..::::: :.:.::.::: ::.. . .:::.:: mKIAA4 NNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVAR---AAAKISDGSQYYVL 130 140 150 160 170 180 460 470 480 490 500 mKIAA0 LIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGSLRAPS-GEVA ::::::::.:. .:..:::.:..::::::::::: : : ::: :::: ..:. : :. : mKIAA4 LIITDGVISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGD--DVRVSSRGRYA 190 200 210 220 230 240 510 520 530 540 550 560 mKIAA0 IRDIVQFVPFRQF------QNAPKEALAQCVLAEIPQQVVGYFNTYKLLP-PKNPAVK ::::::::::.. : ::. ::::::.:...:. : . : : :: mKIAA4 ERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPASPNP 250 260 270 280 290 300 mKIAA4 TPAPEQP 310 >>mKIAA1342 ( 499 res) mid23032 (499 aa) initn: 60 init1: 60 opt: 163 Z-score: 187.3 bits: 44.3 E(): 2.7e-05 Smith-Waterman score: 163; 23.810% identity (25.714% ungapped) in 189 aa overlap (74-254:281-463) 50 60 70 80 90 100 mKIAA0 NLLDADVTSKSDPLCVLFLNTSGHQWYEVERTERIKNSLNPKFSKTFV---IDYYFEVVQ .:. ....:.: :..::. : : mKIAA1 AQGLPAMDEQSMTSDPYIKMTILPEKKHRVKTRVLRKTLDPVFDETFTFYGIPYPHIQEL 260 270 280 290 300 310 110 120 130 140 150 mKIAA0 KLKFGIYDIDNKTIELSDDDFLGECEVTLGQI-VSSKKL--TRPLVLKNGKPA-GKGSIT .:.: . ..: ..: :: .:: . :. : .:. :. :: .. .:.: . :.: . mKIAA1 SLHFTVLSFD----RFSRDDVIGEVLIPLSGIELSDGKMLMTREIIKRNAKKSSGRGELL 320 330 340 350 360 160 170 180 190 200 210 mKIAA0 IS-AEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGHWLMVHRTEVIKNNLN .: . : ... ..::.: ..:. : ::::.. . . . . ..:.: : . : mKIAA1 VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKR-ISKKKTHVKKCTPN 370 380 390 400 410 420 220 230 240 250 260 270 mKIAA0 PMWKPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEYE ... . . .. : . . ... : . . ...:: mKIAA1 AVFNELFV-FDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICD 430 440 450 460 470 480 280 290 300 310 320 330 mKIAA0 CINEKKRQKKKSYKNSGVISVKHCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPSSP mKIAA1 FPRRQIAKWHMLCDG 490 >>mKIAA0538 ( 826 res) msh37311 (826 aa) initn: 121 init1: 69 opt: 156 Z-score: 176.9 bits: 43.1 E(): 0.0001 Smith-Waterman score: 182; 23.790% identity (26.818% ungapped) in 248 aa overlap (28-268:25-251) 10 20 30 40 50 60 mKIAA0 LRSCRLAVLLAGSPPSLDFCGDIAPQDMAAQCVTKVELNVSCNNLLDADVTSKSDPLCVL :: . .... : .:: :.:..::: :.. mKIAA0 PSLPREGTHESEPLPARPPRRRPAMAKRSSLSIRI-VEGKNLPAKDITGSSDPYCIV 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 FLNTSGHQWYEVERTERIKNSLNPKFSKTFVIDYYFEVVQKLKFGIYDIDNKTIELSDDD ... . :: . ..: : ... . . . . . . : ..: : :: :: mKIAA0 KVDNE-----PIIRTATVWKTLCPFWGEDYQV-HLPPTFHTVAFYVMDEDA----LSRDD 60 70 80 90 100 130 140 150 160 170 mKIAA0 FLGECEVTLGQIVSSKKLTR---PLVLKNGKPAGKGSITISAEEI---KDNRVVLFEMEA .:. .: ..: : :: . . .: : . : . . .:. .:: mKIAA0 VIGKVCLTRDALASHPKGFSGWTHLVEVDPNEEVQGEIHLRLEVVPGVHASRLRCAVLEA 110 120 130 140 150 160 180 190 200 210 220 230 mKIAA0 RKLDNKDLFGKSDPYLEFHKQTSDGHWLMVHRTEVIKNNLNPMW-KPFKISLNSLCYGDM : : :: : :::... : .:. ...: :.:.. : : . : . :.. mKIAA0 RDLAPKDRNGASDPFVRVHY---NGR---TQETSVVKKSCYPRWNETFDFELEK----GA 170 180 190 200 210 240 250 260 270 280 290 mKIAA0 DKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEYECINEKKRQKKKSYKNSGV .... :: .:.: ...:..: ... .: :.. mKIAA0 SEALLVEAWDWDLVSQNDFLGKVVVNVQRLCSAQQEEGWFRLQPDQSKSRQGKGNLGSLQ 220 230 240 250 260 270 300 310 320 330 340 350 mKIAA0 ISVKHCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPSSPDSLHYISPNGVNEYLTAI mKIAA0 LEVRLRDETVLPSVCYQPLVQLLCQEVKLGTQGPGRLIPVIEETTSAECRQEVATTLLKL 280 290 300 310 320 330 >>mKIAA0559 ( 1592 res) mbg01260 (1592 aa) initn: 130 init1: 101 opt: 152 Z-score: 169.2 bits: 42.7 E(): 0.00028 Smith-Waterman score: 156; 26.630% identity (30.818% ungapped) in 184 aa overlap (133-296:1330-1508) 110 120 130 140 150 mKIAA0 KFGIYDIDNKTIELSDDDFLGECEVTLGQIVSSKKL--TRPL-VLKNGKPAGKGSITISA ::.:: ..: : :... : : .. mKIAA0 VVEKGAHAHSGPTSAGSSSVPSPGQPGSPSVSKKKHGGSKPTDVSKTASHPITGEIQLQI 1300 1310 1320 1330 1340 1350 160 170 180 190 200 210 mKIAA0 EEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGHWLMVH--------RTEVIK . : .. . ..::.: .: : :::... . . :. ..:. ::. .. mKIAA0 NYDLGNLIIHI-LQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASVEYKRRTKYVQ 1360 1370 1380 1390 1400 1410 220 230 240 250 260 mKIAA0 NNLNPMWKP---FK-ISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQ---TTMTKLK ..::: :. .: ::...: : ::..: .::: .:.:..: .. ..: mKIAA0 KSLNPEWNQTVIYKSISMEQL----MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 1420 1430 1440 1450 1460 1470 270 280 290 300 310 320 mKIAA0 EASRSSPV--EYECINEKKRQKKKSYKNSGVISVKHCEITVECTFLDYIMGGCQLNFTVG .. : :. . : :.. : ..... ..: :: mKIAA0 NTPRWYPLKEQTESIEHGKSHSSQNSQQSPKPSVIKSRSHGIFPDPSKDMQVPTIEKSHS 1480 1490 1500 1510 1520 1530 330 340 350 360 370 380 mKIAA0 VDFTGSNGDPSSPDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQW mKIAA0 SPGSSKSSSEGHLRSHGPSRSQSKTSVAQTHLEDAGAAIAAAEAAVQQLRIQPSKRRK 1540 1550 1560 1570 1580 1590 >>mKIAA0985 ( 684 res) mbp05185 (684 aa) initn: 125 init1: 96 opt: 142 Z-score: 161.7 bits: 40.0 E(): 0.00073 Smith-Waterman score: 150; 21.429% identity (25.532% ungapped) in 280 aa overlap (40-286:404-671) 10 20 30 40 50 60 mKIAA0 LAGSPPSLDFCGDIAPQDMAAQCVTKVELNVSCNNLLDADVTSKSDPLCVLFLNTSGHQW . ..: : .. .:: : : : . mKIAA0 SYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHL-LPGASK 380 390 400 410 420 430 70 80 90 100 110 120 mKIAA0 YEVERTERIKNSLNPKFSKTFVIDYYFEV-VQK--LKFGIYDIDNKTIELSDDDFLGECE . ::. ..:. :: ...:. : .:. :.... : : ... ..:.:: . mKIAA0 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED----KFGHNEFIGETR 440 450 460 470 480 130 140 150 160 170 mKIAA0 VTLGQIVSSKKLTRPLVLKNGKPAGKGSITISA-----------EEIKD----NRVVLFE .: .. .... . . :. : ... : :: :.: : ..... mKIAA0 FSLKKLKANQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 490 500 510 520 530 540 180 190 200 210 mKIAA0 MEARK-------------LDNKDLFGKSDPYLEFHKQTSDGHWLMVHRTEVIKNNLNPMW : . . : : : :::.... . . :. :.:.. :..::: . mKIAA0 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAK-HKTQIKKKTLNPEF 550 560 570 580 590 600 220 230 240 250 260 270 mKIAA0 -KPFKISLNSLCYGDM-DKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEYEC . : . .. ..:. :.. . .::: :.: :: : .. : . ::: mKIAA0 NEEF---FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKH---WYEC 610 620 630 640 650 660 280 290 300 310 320 330 mKIAA0 INEKKRQKKKSYKNSGVISVKHCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPSSPD ...: .. .. mKIAA0 LKNKDKKIERWHQLQNENHVSSD 670 680 >>mKIAA4194 ( 320 res) mbg12940 (320 aa) initn: 135 init1: 69 opt: 126 Z-score: 146.9 bits: 36.2 E(): 0.0049 Smith-Waterman score: 225; 26.977% identity (29.897% ungapped) in 215 aa overlap (49-254:71-273) 20 30 40 50 60 70 mKIAA0 FCGDIAPQDMAAQCVTKVELNVSCNNLLDADVTSKSDPLCVLFLNTSGHQWYEVERTERI :. . ::: .:: . .. :: :. mKIAA4 LGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYE---TKVH 50 60 70 80 90 80 90 100 110 120 130 mKIAA0 KNSLNPKFSKTFVIDYYFEVV--QKLKFGIYDIDNKTIELSDDDFLGECEVTLGQIVSSK ...::: :..::.. .. . . : ..:::.: ..: :..:: .: .. . .. mKIAA4 RKTLNPAFNETFTFKVPYQELGGKTLVMAIYDFD----RFSKHDIIGEVKVPMNTVDLGQ 100 110 120 130 140 150 140 150 160 170 180 190 mKIAA0 KLTRPLVLKNG---KPAGKGSITISAEEIKD-NRVVLFEMEARKLDNKDLFGKSDPYLEF . . :..: .: :.: : . . ..... .::..: . :. : ::::... mKIAA4 PIEEWRDLQGGEKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKI 160 170 180 190 200 210 200 210 220 230 240 mKIAA0 HKQTSDGHWLMVHRTEVIKNNLNPMWKP---FKISLNSLCYGDMDKTIKVECYDYDNDGS : . ..:. : ..: : :..:::... :.: .... . . : :::. :. mKIAA4 HLM-QNGKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQI----QKVQVVVTVLDYDKLGK 220 230 240 250 260 250 260 270 280 290 300 mKIAA0 HDLIGTFQTTMTKLKEASRSSPVEYECINEKKRQKKKSYKNSGVISVKHCEITVECTFLD .. :: mKIAA4 NEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEEVDALLGKNK 270 280 290 300 310 320 >>mKIAA4254 ( 933 res) mbg00605 (933 aa) initn: 95 init1: 60 opt: 130 Z-score: 146.4 bits: 37.7 E(): 0.0052 Smith-Waterman score: 132; 25.000% identity (30.769% ungapped) in 288 aa overlap (166-437:249-498) 140 150 160 170 180 190 mKIAA0 KKLTRPLVLKNGKPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQ .... . :. :. :: :.::::. . mKIAA4 DVFTVSKVAHVQQMKTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKTGSSDPYVTVQVG 220 230 240 250 260 270 200 210 220 230 240 mKIAA0 TSDGHWLMVHRTEVIKNNLNPMWKPFKISLNSLCYGDMDKTIKVECYDYDND-------- . .::..: .::::.:. :. .. :... :. :::. .: :.: mKIAA4 KTK------KRTKTIFGNLNPVWEE-KFHFE--CHNSSDR-IKVRVWDEDDDIKSRVKQR 280 290 300 310 320 250 260 270 280 290 300 mKIAA0 ---GSHDLIGTFQTTMTKLKEASRSSPVEYECINEKKRQKKKSYKNSGVISVK-HCEITV : :..: :. ... : : : : .:: :.. ::.: .. :: mKIAA4 LKRESDDFLGQ---TIIEVRTLSGEMDVWY---NLEKRTDKSAV--SGAIRLQISVEIKG 330 340 350 360 370 380 310 320 330 340 350 360 mKIAA0 ECTFLDY-IMGGCQLN--FTVGVDFTGSNGDPSSPDSLHYISPNGVNEYLTAIWSVGLVI : : .. : . : .:. ::.: .: :.. .. :.: . mKIAA4 EEKVAPYHVQYTCLHENLFHYLTDIQGSGGV--------WI-PEARGD---DAWKVYF-- 390 400 410 420 370 380 390 400 410 mKIAA0 QDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIR-LY : :... :.. . .:. .: :. .: :. ... : : .: : mKIAA4 -DETAQEIVDEFAMRYGIESIYQAMTHFACL--SSKYMCPGVPAVMS---TLLANINAYY 430 440 450 460 470 480 420 430 440 450 460 470 mKIAA0 GPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSII . :. : .. ::::. mKIAA4 AHTTASTNVSASDRFAASNFGKERFVKLLDQLHNSLRIDLSTYRNNFPAGSPERLQDLKS 490 500 510 520 530 540 560 residues in 1 query sequences 1768457 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:25:02 2006 done: Mon Mar 27 10:25:03 2006 Scan time: 0.750 Display time: 0.110 Function used was FASTA [version 3.4t11 Apr 17, 2002]