# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mif32059.fasta.nr -Q ../query/mKIAA0117.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0117, 122 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918571 sequences Expectation_n fit: rho(ln(x))= 4.8745+/-0.000183; mu= 6.1729+/- 0.010 mean_var=71.3241+/-13.929, 0's: 47 Z-trim: 50 B-trim: 2969 in 1/68 Lambda= 0.151864 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148679876|gb|EDL11823.1| RNA binding motif prot ( 432) 787 181.1 1.3e-43 gi|148679875|gb|EDL11822.1| RNA binding motif prot ( 442) 787 181.1 1.3e-43 gi|76363312|sp|Q5M9F1.1|RBM34_RAT RecName: Full=RN ( 428) 631 146.9 2.4e-33 gi|114573273|ref|XP_514284.2| PREDICTED: RNA bindi ( 425) 552 129.6 3.9e-28 gi|123211150|emb|CAM28277.1| novel protein [Homo s ( 408) 535 125.9 5e-27 gi|158258156|dbj|BAF85051.1| unnamed protein produ ( 425) 535 125.9 5.2e-27 gi|20809545|gb|AAH29451.1| RNA binding motif prote ( 425) 535 125.9 5.2e-27 gi|57013870|sp|P42696.2|RBM34_HUMAN RecName: Full= ( 430) 535 125.9 5.2e-27 gi|119590411|gb|EAW70005.1| RNA binding motif prot ( 459) 535 125.9 5.5e-27 gi|109019944|ref|XP_001102111.1| PREDICTED: RNA bi ( 427) 474 112.5 5.5e-23 gi|146331996|gb|ABQ22504.1| RNA-binding protein 34 ( 220) 436 104.0 1.1e-20 gi|194206109|ref|XP_001915106.1| PREDICTED: simila ( 428) 412 98.9 6.8e-19 gi|194042563|ref|XP_001925470.1| PREDICTED: simila ( 424) 405 97.4 1.9e-18 gi|73952572|ref|XP_536341.2| PREDICTED: similar to ( 531) 396 95.5 9e-18 gi|126307226|ref|XP_001378610.1| PREDICTED: hypoth ( 439) 377 91.3 1.4e-16 gi|76363311|sp|Q8C5L7.1|RBM34_MOUSE RecName: Full= ( 375) 350 85.3 7.5e-15 gi|149638231|ref|XP_001512144.1| PREDICTED: simila ( 527) 321 79.1 7.9e-13 gi|118110263|ref|XP_001231592.1| PREDICTED: simila ( 229) 281 70.0 1.9e-10 gi|62185676|gb|AAH92323.1| LOC443584 protein [Xeno ( 414) 276 69.1 6.2e-10 gi|118088184|ref|XP_423974.2| PREDICTED: similar t ( 405) 275 68.9 7e-10 gi|159155220|gb|AAI54771.1| Zgc:92062 protein [Dan ( 410) 272 68.3 1.1e-09 gi|49523226|gb|AAH75294.1| MGC88935 protein [Xenop ( 412) 271 68.0 1.3e-09 gi|49900339|gb|AAH75875.1| Zgc:92062 [Danio rerio] ( 411) 265 66.7 3.3e-09 gi|224047848|ref|XP_002191823.1| PREDICTED: simila ( 428) 263 66.3 4.5e-09 gi|89266850|emb|CAJ83915.1| novel protein containi ( 406) 259 65.4 8e-09 gi|210094770|gb|EEA42945.1| hypothetical protein B ( 542) 255 64.6 1.8e-08 gi|49114983|gb|AAH72838.1| LOC443584 protein [Xeno ( 403) 253 64.1 2e-08 gi|221121898|ref|XP_002157256.1| PREDICTED: simila ( 304) 235 60.0 2.5e-07 gi|115972648|ref|XP_001177737.1| PREDICTED: simila ( 342) 223 57.5 1.7e-06 gi|156217196|gb|EDO38117.1| predicted protein [Nem ( 962) 227 58.7 2e-06 gi|189237665|ref|XP_001812360.1| PREDICTED: simila ( 369) 207 54.0 2e-05 gi|110756733|ref|XP_394565.3| PREDICTED: similar t ( 277) 200 52.3 4.7e-05 gi|212517100|gb|EEB19037.1| RNA-binding protein, p ( 292) 200 52.4 4.9e-05 gi|74694749|sp|Q75BJ7.1|NOP12_ASHGO RecName: Full= ( 426) 191 50.5 0.00025 gi|157341931|emb|CAO63387.1| unnamed protein produ ( 541) 188 50.0 0.00048 gi|156540477|ref|XP_001599982.1| PREDICTED: simila ( 518) 185 49.3 0.00073 gi|65304465|emb|CAI76844.1| hypothetical protein, ( 346) 177 47.4 0.0018 gi|46228092|gb|EAK88991.1| Nop12p nucleolar protei ( 349) 175 46.9 0.0025 gi|211999841|gb|EEB05501.1| nucleolar protein [Sch ( 437) 176 47.2 0.0025 gi|193654831|ref|XP_001949854.1| PREDICTED: simila ( 372) 172 46.3 0.0041 gi|194159033|gb|EDW73934.1| GK21670 [Drosophila wi ( 255) 170 45.7 0.0042 gi|193909683|gb|EDW08550.1| GI20026 [Drosophila mo ( 261) 170 45.7 0.0043 gi|54657520|gb|EAL36281.1| hypothetical protein Ch ( 349) 171 46.1 0.0046 gi|17367899|sp|O13741.1|NOP12_SCHPO RecName: Full= ( 438) 172 46.4 0.0046 gi|223532959|gb|EEF34725.1| RNA binding protein, p ( 830) 175 47.3 0.0047 gi|89286093|gb|EAR84097.1| RNA binding protein [Te ( 451) 171 46.2 0.0055 gi|194178992|gb|EDW92603.1| GE14442 [Drosophila ya ( 250) 166 44.8 0.0076 gi|194127215|gb|EDW49258.1| GM11898 [Drosophila se ( 250) 165 44.6 0.0089 gi|190659857|gb|EDV57070.1| GG23005 [Drosophila er ( 250) 165 44.6 0.0089 gi|7291851|gb|AAF47270.1| Exu-associated protein [ ( 250) 165 44.6 0.0089 >>gi|148679876|gb|EDL11823.1| RNA binding motif protein (432 aa) initn: 787 init1: 787 opt: 787 Z-score: 939.5 bits: 181.1 E(): 1.3e-43 Smith-Waterman score: 787; 100.000% identity (100.000% similar) in 122 aa overlap (1-122:311-432) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK :::::::::::::::::::::::::::::: gi|148 RSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS 350 360 370 380 390 400 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :::::::::::::::::::::::::::::::: gi|148 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ 410 420 430 >>gi|148679875|gb|EDL11822.1| RNA binding motif protein (442 aa) initn: 787 init1: 787 opt: 787 Z-score: 939.4 bits: 181.1 E(): 1.3e-43 Smith-Waterman score: 787; 100.000% identity (100.000% similar) in 122 aa overlap (1-122:321-442) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK :::::::::::::::::::::::::::::: gi|148 RSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS 360 370 380 390 400 410 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :::::::::::::::::::::::::::::::: gi|148 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ 420 430 440 >>gi|76363312|sp|Q5M9F1.1|RBM34_RAT RecName: Full=RNA-bi (428 aa) initn: 778 init1: 513 opt: 631 Z-score: 754.9 bits: 146.9 E(): 2.4e-33 Smith-Waterman score: 631; 86.885% identity (88.525% similar) in 122 aa overlap (1-122:315-428) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK :::::::::::::::::::::::::::::: gi|763 RSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS ::::::::::::::::::::::::::::::.::: : :::::::::::: ::: gi|763 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSVKKDGSKSKQRLNFTSKEGKSHSK------ 350 360 370 380 390 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ ::::::::::::::: ::::: : ::::::. gi|763 -NAFIGEKAVLMKKKK-GQKKKGQTKKPRKQK 400 410 420 >>gi|114573273|ref|XP_514284.2| PREDICTED: RNA binding m (425 aa) initn: 583 init1: 362 opt: 552 Z-score: 661.4 bits: 129.6 E(): 3.9e-28 Smith-Waterman score: 552; 75.410% identity (86.066% similar) in 122 aa overlap (1-122:312-425) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK ::::. .::.:.:::::::::::.:::::: gi|114 RSVFVGNLPYKVEESAVEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS ::::::::::::::::::::::::::::: :: .: :::: :::::. . :: :: gi|114 LNNSELMGRKLRVMRSVNKEKLKQQNSNPRLK-NVSKPKQGLNFTSR-----TAEG--HS 350 360 370 380 390 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :. ::::::::.: :::::::. . ::::::. gi|114 KSLFIGEKAVLLKMKKKGQKKSGRPKKPRKQK 400 410 420 >>gi|123211150|emb|CAM28277.1| novel protein [Homo sapie (408 aa) initn: 571 init1: 358 opt: 535 Z-score: 641.5 bits: 125.9 E(): 5e-27 Smith-Waterman score: 535; 73.770% identity (84.426% similar) in 122 aa overlap (1-122:295-408) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK ::::. .::.:.:::::::::::.:::::: gi|123 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 270 280 290 300 310 320 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS :::::::::::::::::::::.::::::: :: .: :::: :::::: . :: : gi|123 LNNSELMGRKLRVMRSVNKEKFKQQNSNPRLK-NVSKPKQGLNFTSK-----TAEG--HP 330 340 350 360 370 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :. ::::::::.: :::::::. . :: :::. gi|123 KSLFIGEKAVLLKTKKKGQKKSGRPKKQRKQK 380 390 400 >>gi|158258156|dbj|BAF85051.1| unnamed protein product [ (425 aa) initn: 571 init1: 358 opt: 535 Z-score: 641.2 bits: 125.9 E(): 5.2e-27 Smith-Waterman score: 535; 73.770% identity (84.426% similar) in 122 aa overlap (1-122:312-425) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK ::::. .::.:.:::::::::::.:::::: gi|158 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS :::::::::::::::::::::.::::::: :: .: :::: :::::: . :: : gi|158 LNNSELMGRKLRVMRSVNKEKFKQQNSNPRLK-NVSKPKQGLNFTSK-----TAEG--HP 350 360 370 380 390 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :. ::::::::.: :::::::. . :: :::. gi|158 KSLFIGEKAVLLKTKKKGQKKSGRPKKQRKQK 400 410 420 >>gi|20809545|gb|AAH29451.1| RNA binding motif protein 3 (425 aa) initn: 571 init1: 358 opt: 535 Z-score: 641.2 bits: 125.9 E(): 5.2e-27 Smith-Waterman score: 535; 73.770% identity (84.426% similar) in 122 aa overlap (1-122:312-425) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK ::::. .::.:.:::::::::::.:::::: gi|208 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS :::::::::::::::::::::.::::::: :: .: :::: :::::: . :: : gi|208 LNNSELMGRKLRVMRSVNKEKFKQQNSNPRLK-NVSKPKQGLNFTSK-----TAEG--HP 350 360 370 380 390 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :. ::::::::.: :::::::. . :: :::. gi|208 KSLFIGEKAVLLKTKKKGQKKSGRPKKQRKQK 400 410 420 >>gi|57013870|sp|P42696.2|RBM34_HUMAN RecName: Full=RNA- (430 aa) initn: 571 init1: 358 opt: 535 Z-score: 641.2 bits: 125.9 E(): 5.2e-27 Smith-Waterman score: 535; 73.770% identity (84.426% similar) in 122 aa overlap (1-122:317-430) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK ::::. .::.:.:::::::::::.:::::: gi|570 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS :::::::::::::::::::::.::::::: :: .: :::: :::::: . :: : gi|570 LNNSELMGRKLRVMRSVNKEKFKQQNSNPRLK-NVSKPKQGLNFTSK-----TAEG--HP 350 360 370 380 390 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :. ::::::::.: :::::::. . :: :::. gi|570 KSLFIGEKAVLLKTKKKGQKKSGRPKKQRKQK 400 410 420 430 >>gi|119590411|gb|EAW70005.1| RNA binding motif protein (459 aa) initn: 571 init1: 358 opt: 535 Z-score: 640.8 bits: 125.9 E(): 5.5e-27 Smith-Waterman score: 535; 73.770% identity (84.426% similar) in 122 aa overlap (1-122:346-459) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK ::::. .::.:.:::::::::::.:::::: gi|119 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS :::::::::::::::::::::.::::::: :: .: :::: :::::: . :: : gi|119 LNNSELMGRKLRVMRSVNKEKFKQQNSNPRLK-NVSKPKQGLNFTSK-----TAEG--HP 380 390 400 410 420 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :. ::::::::.: :::::::. . :: :::. gi|119 KSLFIGEKAVLLKTKKKGQKKSGRPKKQRKQK 430 440 450 >>gi|109019944|ref|XP_001102111.1| PREDICTED: RNA bindin (427 aa) initn: 441 init1: 360 opt: 474 Z-score: 569.0 bits: 112.5 E(): 5.5e-23 Smith-Waterman score: 505; 73.333% identity (82.500% similar) in 120 aa overlap (1-120:317-427) 10 20 30 mKIAA0 RIVRNPLTGVGRGFGYVLFENTDAVHLALK ::::. .::.:.:::::::::::.:::::: gi|109 RSVFVGNLPYKVAESAVEKHFLDCGSVMAVRIVRDQVTGIGKGFGYVLFENTDSVHLALK 290 300 310 320 330 340 40 50 60 70 80 90 mKIAA0 LNNSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHS ::::::::::::::::::::::::::::: :: .. :::: :::::: .. :: gi|109 LNNSELMGRKLRVMRSVNKEKLKQQNSNPRLK-NIGKPKQGLNFTSKAAEEHS------- 350 360 370 380 390 100 110 120 mKIAA0 KNAFIGEKAVLMKKKKKGQKKKVQMKKPRKQQ :. :::::::: : :::::::. :: :: gi|109 KSLFIGEKAVL-KTKKKGQKKSGCPKKQRK 400 410 420 122 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 22:43:51 2009 done: Thu Mar 12 22:47:39 2009 Total Scan time: 535.510 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]