Comparison of KIAA cDNA sequences between mouse and human (FLJ00306)
<<Original sequence data>>
mouse mFLJ00306 (mif03013) length: 433 bp, CDS: 2 - 358
human (sh05582) length: 3198 bp, CDS: 1 - 837
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 477 - 477 1 0 0.0
CDS: 478 - 837 174 13 7.0
3'UTR: 838 - 3194 140 112 44.4
amino acid
CDS: 478 - 837 61 59 49.2
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
mif03013 1 .................................................. 1
sh05582 1 GGCTTCGCCTACCCCAGCGAGCTCAAGGCCCACGAAGTGAAGCATGAGAG 50
G F A Y P S E L K A H E V K H E S
51 ----+----*----+----*----+----*----+----*----+----* 100
mif03013 1 .................................................. 1
sh05582 51 TGGCCGCTGCCATGTCTGCGTCGAGTGCGGCCTGGACTTCTCCACCCTGA 100
G R C H V C V E C G L D F S T L T
101 ----+----*----+----*----+----*----+----*----+----* 150
mif03013 1 .................................................. 1
sh05582 101 CCCAGCTCAAGCGCCACCTGGCCTCCCACCAGGGCCCCACCCTCTACCAG 150
Q L K R H L A S H Q G P T L Y Q
151 ----+----*----+----*----+----*----+----*----+----* 200
mif03013 1 .................................................. 1
sh05582 151 TGCCTCGAGTGTGACAAGTCCTTCCACTACCGCAGCCAGTTGCAGAACCA 200
C L E C D K S F H Y R S Q L Q N H
201 ----+----*----+----*----+----*----+----*----+----* 250
mif03013 1 .................................................. 1
sh05582 201 CATGCTCAAGCACCAGAACGTGCGACCCTTCGTGTGCACTGAATGCGGCA 250
M L K H Q N V R P F V C T E C G M
251 ----+----*----+----*----+----*----+----*----+----* 300
mif03013 1 .................................................. 1
sh05582 251 TGGAGTTCAGCCAGATTCACCACCTCAAGCAGCACTCCCTCACCCACAAG 300
E F S Q I H H L K Q H S L T H K
301 ----+----*----+----*----+----*----+----*----+----* 350
mif03013 1 .................................................. 1
sh05582 301 GGCGTGAAGGAGTTCAAGTGCGAGGTGTGTGGCCGGGAGTTCACCCTACA 350
G V K E F K C E V C G R E F T L Q
351 ----+----*----+----*----+----*----+----*----+----* 400
mif03013 1 .................................................. 1
sh05582 351 GGCGAACATGAAGCGGCACATGCTGATCCACACCAGCGTCCGGCCCTACC 400
A N M K R H M L I H T S V R P Y Q
401 ----+----*----+----*----+----*----+----*----+----* 450
mif03013 1 .................................................. 1
sh05582 401 AGTGCCACATCTGCTTCAAGACCTTTGTACAGAAGCAGACTCTCAAGACC 450
C H I C F K T F V Q K Q T L K T
451 ----+----*----+----*----+----*----+----*----+----* 500
P F K C K V C G
mif03013 1 ..........................GCCGTTCAAGTGCAAGGTGTGCGG 24
||| ||||| ||||||||||||||
sh05582 451 CACATGATTGTACACTCGCCCGTGAAGCCATTCAAATGCAAGGTGTGCGG 500
H M I V H S P V K P F K C K V C G
501 ----+----*----+----*----+----*----+----*----+----* 550
K S F N R M Y N L L G H M H L H A
mif03013 25 GAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACG 74
||||||||||||||||||||||||||||||||| || |||||||||||||
sh05582 501 GAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACG 550
K S F N R M Y N L L G H M H L H A
551 ----+----*----+----*----+----*----+----*----+----* 600
G S K P F K C P Y C S S K F N L
mif03013 75 CAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTC 124
| ||||||||||| ||||||||||| ||||||||||||||||| || |||
sh05582 551 CCGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTTAATCTC 600
G S K P F K C P Y C S S K F N L
601 ----+----*----+----*----+----*----+----*----+----* 650
K G N L S R H M K V K H G V M D I
mif03013 125 AAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACAT 174
||||| ||||||||||||||||||||||||||||| ||||||||||||||
sh05582 601 AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTCATGGACAT 650
K G N L S R H M K V K H G V M D I
651 ----+----*----+----*----+----*----+----*----+----* 700
S L D S
mif03013 175 CAGCCTGGACAGC..................................... 187
| |||||||||||
sh05582 651 CGGCCTGGACAGCCAAGACCCCATGATGGAGCTGACAGGCACTGACCCTT 700
G L D S Q D P M M E L T G T D P S
701 ----+----*----+----*----+----*----+----*----+----* 750
mif03013 188 .................................................. 188
sh05582 701 CAGAGCTCGACGGCCAGCAGGAGATGGAGGACTTCGAGGAGAACGCCTAC 750
E L D G Q Q E M E D F E E N A Y
751 ----+----*----+----*----+----*----+----*----+----* 800
mif03013 188 .................................................. 188
sh05582 751 AGCTATGCGAGCGTGGACAGCAGCGCCGAGGCCAGTGTCCTCACTGAACA 800
S Y A S V D S S A E A S V L T E Q
801 ----+----*----+----*----+----*----+----*----+----* 850
mif03013 188 .................................................. 188
sh05582 801 GGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCGCAAGCTGGGCC 850
A M K E M A Y Y N V L *
851 ----+----*----+----*----+----*----+----*----+----* 900
mif03013 188 .................................................. 188
sh05582 851 ACCCCTAACGGGGGCCGGGGGCGAGGGCATGGGGGTGAGACCCATGGGCT 900
901 ----+----*----+----*----+----*----+----*----+----* 950
mif03013 188 .................................................. 188
sh05582 901 GCAGGCTGCACCTCCTGCAGCCGAGAAACAAGCTACTGCCCCACTGTTCT 950
951 ----+----*----+----*----+----*----+----*----+----* 1000
mif03013 188 .................................................. 188
sh05582 951 GAGCCCTCCCTCCCCGAGTCATTTGCACCACTAGGGACCTTTAGACCAAA 1000
1001 ----+----*----+----*----+----*----+----*----+----* 1050
mif03013 188 .................................................. 188
sh05582 1001 TGGAGACTGTACTACTGGCCCCGGCTGTGAGCCAGCACAGGCCCAGGCAT 1050
1051 ----+----*----+----*----+----*----+----*----+----* 1100
mif03013 188 .................................................. 188
sh05582 1051 CCCAGCAAGGGAAGGAGAACACGCGAGGCCCAGATCTGGGTCTCCCTGGC 1100
1101 ----+----*----+----*----+----*----+----*----+----* 1150
mif03013 188 .................................................. 188
sh05582 1101 CTGCTTCCGTGGGGAGTGGGAGAAGTGGGGCCACTGGGGACAGGTCACAA 1150
1151 ----+----*----+----*----+----*----+----*----+----* 1200
mif03013 188 .................................................. 188
sh05582 1151 GGGCACCGGCCCTCGGGGTCTCTCCAGGCCCAGCAGAGCTCTTCAGGGGT 1200
1201 ----+----*----+----*----+----*----+----*----+----* 1250
mif03013 188 .................................................. 188
sh05582 1201 CCTGACACTGGAAGAAGAGACCACTTGAGCCATGTCTTTTTCACGGCCAA 1250
1251 ----+----*----+----*----+----*----+----*----+----* 1300
mif03013 188 .................................................. 188
sh05582 1251 CTCCTGCCTCTAAGGATGTCTGAGCTCCCCTCTGGCCAGTACTGCCCACC 1300
1301 ----+----*----+----*----+----*----+----*----+----* 1350
mif03013 188 .................................................. 188
sh05582 1301 TCTACCTTGTCCAGGCCCCCTTCCCCGCCCTGTCGACGGACCGCCAGGCA 1350
1351 ----+----*----+----*----+----*----+----*----+----* 1400
mif03013 188 ...........................................CAAGGTG 194
||||
sh05582 1351 GGGCACTCTGCCTTCTACCTCCCGGGGTCTCCCATGCGCTCCTCAAGCCA 1400
1401 ----+----*----+----*----+----*----+----*----+----* 1450
mif03013 195 GGTGGGCTGTGCGCAGTGGACAGAGCAGGATTGACAGCAGCATGGC.... 240
|||| || || ||| | || | |||||| | |||
sh05582 1401 GGTGTGCACGTGGCCCTGGCCCTGGCCTGCAGGACAGCTGGGGGGCACCC 1450
1451 ----+----*----+----*----+----*----+----*----+----* 1500
mif03013 241 .GCACTCAGGAGTCTCCTCT.............................. 259
|| | ||| || | ||| |
sh05582 1451 AGCCCCCAGAAGACCCCTGTCCTACATCCCTTTCTGGAAGTGAGTGTCCC 1500
1501 ----+----*----+----*----+----*----+----*----+----* 1550
mif03013 260 .................................................. 260
sh05582 1501 TACAGTGGATTGCAACACATGTCGTCCACTTCGACCCTAGCTGGAGTGCC 1550
1551 ----+----*----+----*----+----*----+----*----+----* 1600
mif03013 260 .................................................. 260
sh05582 1551 TCACCAGGGGGCCCCACTAGGAACAAAGCCAGGACAGGCCCCGCGTCAGG 1600
1601 ----+----*----+----*----+----*----+----*----+----* 1650
mif03013 260 .................................................. 260
sh05582 1601 CACACACTAACAAAACCAGAAGCATGGGGCAGGGCAGGGCGGAGTGAGGG 1650
1651 ----+----*----+----*----+----*----+----*----+----* 1700
mif03013 260 ............CCAATTAGGGGTGT.AGGGGGGCTGGCCAAGGCTGAGA 296
|||| |||| ||| |||| |||| ||| |
sh05582 1651 CATCACAGGGGACCAAGAAGGGCTGTCCTTGGGGGAGGCCCAGGACCACC 1700
1701 ----+----*----+----*----+----*----+----*----+----* 1750
mif03013 297 CGTCAATGAGGTGGGCTCAGGTC........................... 319
||| |||| || | |||
sh05582 1701 TGTCGGGGAGGGGGACCGCAGTCATTTCTCATTCCTCAGTGTCCACCTTG 1750
1751 ----+----*----+----*----+----*----+----*----+----* 1800
mif03013 320 .................................................. 320
sh05582 1751 CGACGGGGATAGCCACGAGTCAGCAGCTTCCCGGAAAGAGCAACGTATTT 1800
1801 ----+----*----+----*----+----*----+----*----+----* 1850
mif03013 320 .................................................. 320
sh05582 1801 TAAAAAGGAAAGTAAAGCCCACAGAGGGAAATCAAGGGTTTTTTTGAGCA 1850
1851 ----+----*----+----*----+----*----+----*----+----* 1900
mif03013 320 .................................................. 320
sh05582 1851 AAGGGGGTCTTCTGAAGGTAACTTATTATTTTTTTCTTTCCAACTGTGTG 1900
1901 ----+----*----+----*----+----*----+----*----+----* 1950
mif03013 320 .................................................. 320
sh05582 1901 TCACCTATGACCTTTTCTGATGGAGATGCATTTTCTTTTTCCAAGCGTAA 1950
1951 ----+----*----+----*----+----*----+----*----+----* 2000
mif03013 320 .................................................. 320
sh05582 1951 GCTTCCTAATGTGCTGTGCGTGCTTCCTACCCACCCACCCCGAGCAGCCT 2000
2001 ----+----*----+----*----+----*----+----*----+----* 2050
mif03013 320 .................................................. 320
sh05582 2001 GGCCGGGCAGGACTGGGGCTCCATGGGGACTGTCACCCTGGCCCTGGAGG 2050
2051 ----+----*----+----*----+----*----+----*----+----* 2100
mif03013 320 ........................................TGGAGAGAGG 329
|||| |
sh05582 2051 TGCAGCCGCTGGCAGCAGCCTCAGCAGGCTGGGGTGGGAGGCAGGAGAAG 2100
2101 ----+----*----+----*----+----*----+----*----+----* 2150
mif03013 330 GGGAACCTGGAGAGCCAT................................ 347
| | |||| |||| |
sh05582 2101 GCAGAGCTGGGAAGCCCTCCACCCCTGCCTGGCTCCTGCAGTCGCTGACT 2150
2151 ----+----*----+----*----+----*----+----*----+----* 2200
mif03013 348 .................................................. 348
sh05582 2151 TGCTCTGTCCCATGTCCCATCCTCGGCTGTCAGGGCTGCTGACTCTGCTC 2200
2201 ----+----*----+----*----+----*----+----*----+----* 2250
mif03013 348 .................................................. 348
sh05582 2201 AGCCAACAGCTAGCTCCCTCGCTCGCCTGCTCTCTTCCCCTCTGTTCCCA 2250
2251 ----+----*----+----*----+----*----+----*----+----* 2300
mif03013 348 .................................................. 348
sh05582 2251 CGCCAGCTCCTGCCCCTGGAACCAGAGATGACAGGCCCAGGGCAGTGAAT 2300
2301 ----+----*----+----*----+----*----+----*----+----* 2350
mif03013 348 .................................................. 348
sh05582 2301 AGCACATTCAGGAACTTCTAGGGCACCCGGACCCCCCCACCCACTTGCCT 2350
2351 ----+----*----+----*----+----*----+----*----+----* 2400
mif03013 348 ..TGTGGCAGTAACGGGTGGGGGGTATTTATGTCTTCTTCCAAGGACCTA 395
|| ||| | ||| |||| | | | |||| | | |
sh05582 2351 CCTGAGGCCTCAGTGGGGAGGGGCAAGCAGGGGTCTTCCCCAAAGGCACA 2400
2401 ----+----*----+----*----+----*----+----*----+----* 2450
mif03013 396 CGTGGGCTCACTA..................................... 408
|| |||||
sh05582 2401 GATGAAGCCACTAGCTTCAGCCTAGAAACCCGGAGAAGGGAACAGCCTGC 2450
2451 ----+----*----+----*----+----*----+----*----+----* 2500
mif03013 409 .................................................. 409
sh05582 2451 GGTGGGAGGAACCAATCTGGAGCGCAGCCACCCCCAAGGCTGGATCCTTA 2500
2501 ----+----*----+----*----+----*----+----*----+----* 2550
mif03013 409 .................................................. 409
sh05582 2501 AGTGAAGGACCAAGCCAGGCCTCAGGGTGACTGTGATCAGGACTGAGGGG 2550
2551 ----+----*----+----*----+----*----+----*----+----* 2600
mif03013 409 .................................................. 409
sh05582 2551 TGGACAAGGTGGCCCAAGTATGGCTTCCAGACCCCGAAGCCCCACGACCT 2600
2601 ----+----*----+----*----+----*----+----*----+----* 2650
mif03013 409 .................................................. 409
sh05582 2601 CCCAGGTGCCCGCCATGATGACCCTCAGGTGGCAGTGACCCCGTCACTGT 2650
2651 ----+----*----+----*----+----*----+----*----+----* 2700
mif03013 409 .................................................. 409
sh05582 2651 ATAAGACATTTTCTCCTGCTGAGCAGAAGGCATCATCCCCTGCAACTACC 2700
2701 ----+----*----+----*----+----*----+----*----+----* 2750
mif03013 409 .................................................. 409
sh05582 2701 TCTTCCCACGTCTTTCTCCCCTGGTACCAAAAAGAACCCTGTACCTCTCC 2750
2751 ----+----*----+----*----+----*----+----*----+----* 2800
mif03013 409 .................................................. 409
sh05582 2751 TCCTCCTCCTCCCTCCTGCCAGTGCAGTGGCCTTGGTCTTGGAAACTGAA 2800
2801 ----+----*----+----*----+----*----+----*----+----* 2850
mif03013 409 .................................................. 409
sh05582 2801 GGGAGAAGGTCTGGCCCCCAGGGTGGGGCTCTCCTTTCCCTCCCCCAGCC 2850
2851 ----+----*----+----*----+----*----+----*----+----* 2900
mif03013 409 .................................................. 409
sh05582 2851 CCGCCGTCAGCACTGGCCCTCTGTGAGGTTCGATACTTGAACGCCCCCTG 2900
2901 ----+----*----+----*----+----*----+----*----+----* 2950
mif03013 409 .................................................. 409
sh05582 2901 CCCTGTGCCTTGGACCTGGGCAAAGCTAGGAGGAGGAAACAGCACAACTC 2950
2951 ----+----*----+----*----+----*----+----*----+----* 3000
mif03013 409 .................................................. 409
sh05582 2951 ACAGTTTGAGCTGGGGGGTGGTCTTGGCAAGGCTCCTGTCTGTACCCCTC 3000
3001 ----+----*----+----*----+----*----+----*----+----* 3050
mif03013 409 .................................................. 409
sh05582 3001 CCTAACCTTCTCAAAAGAGGTGCACAGCCTCTCGGGTGACTTGGAAACTC 3050
3051 ----+----*----+----*----+----*----+----*----+----* 3100
mif03013 409 .................................................. 409
sh05582 3051 CTGGACAAATTCCATTCTAACTTATTTTGACATGTATACAAACCAACTGT 3100
3101 ----+----*----+----*----+----*----+----*----+----* 3150
mif03013 409 .................................................. 409
sh05582 3101 TTAGAGATTCCACTTGTGCAAAGCCCTACTGTGTTTTTATGTTCCTGTTT 3150
3151 ----+----*----+----*----+----*----+----*----+--- 3198
mif03013 409 ...................AAACAATAATAAAACAATAACTTCT.... 433
|| ||| ||||| ||| | | |
sh05582 3151 AAAAGAGAAGTTTACTTAGCAATAATTATAAATAAATGAATATTCTTT 3198