# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mie39080.fasta.nr -Q ../query/mKIAA1665.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1665, 115 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921323 sequences Expectation_n fit: rho(ln(x))= 5.1184+/-0.000181; mu= 5.5053+/- 0.010 mean_var=59.2076+/-11.477, 0's: 44 Z-trim: 45 B-trim: 0 in 0/67 Lambda= 0.166681 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148672600|gb|EDL04547.1| polymerase (RNA) III ( ( 148) 784 195.9 1.4e-48 gi|149065823|gb|EDM15696.1| polymerase (RNA) III ( ( 196) 784 196.0 1.8e-48 gi|29427995|sp|Q9D2C6.2|RPC8_MOUSE RecName: Full=D ( 204) 784 196.0 1.8e-48 gi|74220193|dbj|BAE31279.1| unnamed protein produc ( 204) 775 193.8 8.2e-48 gi|73968962|ref|XP_849136.1| PREDICTED: similar to ( 204) 773 193.4 1.2e-47 gi|90077470|dbj|BAE88415.1| unnamed protein produc ( 204) 772 193.1 1.4e-47 gi|29428071|sp|Q9Y535.1|RPC8_HUMAN RecName: Full=D ( 204) 772 193.1 1.4e-47 gi|122136999|sp|Q2T9X1.1|RPC8_BOVIN RecName: Full= ( 204) 767 191.9 3.1e-47 gi|194037188|ref|XP_001929168.1| PREDICTED: simila ( 204) 766 191.7 3.7e-47 gi|149743078|ref|XP_001502570.1| PREDICTED: simila ( 204) 764 191.2 5.2e-47 gi|126343684|ref|XP_001363572.1| PREDICTED: simila ( 204) 754 188.8 2.7e-46 gi|111306182|gb|AAI21598.1| Hypothetical protein M ( 207) 727 182.3 2.5e-44 gi|73968964|ref|XP_858018.1| PREDICTED: similar to ( 175) 702 176.3 1.4e-42 gi|16878080|gb|AAH17248.1| Polymerase (RNA) III (D ( 175) 701 176.0 1.6e-42 gi|224095057|ref|XP_002197392.1| PREDICTED: simila ( 206) 698 175.3 3.1e-42 gi|118082710|ref|XP_416229.2| PREDICTED: similar t ( 206) 696 174.8 4.3e-42 gi|126343686|ref|XP_001363652.1| PREDICTED: simila ( 175) 695 174.6 4.5e-42 gi|194037190|ref|XP_001929172.1| PREDICTED: simila ( 175) 695 174.6 4.5e-42 gi|149743080|ref|XP_001502576.1| PREDICTED: simila ( 175) 693 174.1 6.2e-42 gi|148672601|gb|EDL04548.1| polymerase (RNA) III ( ( 189) 663 166.9 9.9e-40 gi|109094357|ref|XP_001105400.1| PREDICTED: simila ( 216) 653 164.5 5.9e-39 gi|224095061|ref|XP_002197405.1| PREDICTED: simila ( 177) 650 163.8 8.2e-39 gi|209733538|gb|ACI67638.1| DNA-directed RNA polym ( 208) 633 159.7 1.6e-37 gi|210127168|gb|EEA74851.1| hypothetical protein B ( 203) 618 156.1 1.9e-36 gi|210090026|gb|EEA38314.1| hypothetical protein B ( 203) 616 155.6 2.7e-36 gi|72021379|ref|XP_796543.1| PREDICTED: similar to ( 203) 563 142.9 1.8e-32 gi|215502059|gb|EEC11553.1| DNA-directed RNA polym ( 200) 539 137.1 9.8e-31 gi|221113754|ref|XP_002163071.1| PREDICTED: simila ( 202) 506 129.2 2.4e-28 gi|49903087|gb|AAH76336.1| Zgc:92878 [Danio rerio] ( 214) 502 128.2 5e-28 gi|156217371|gb|EDO38289.1| predicted protein [Nem ( 205) 498 127.2 9.3e-28 gi|47206295|emb|CAF93183.1| unnamed protein produc ( 251) 490 125.4 4.2e-27 gi|212506148|gb|EEB10445.1| DNA-directed RNA polym ( 200) 481 123.1 1.6e-26 gi|108871791|gb|EAT36016.1| DNA-directed RNA polym ( 231) 479 122.7 2.4e-26 gi|91092914|ref|XP_971430.1| PREDICTED: similar to ( 199) 477 122.2 3e-26 gi|48096324|ref|XP_394665.1| PREDICTED: similar to ( 203) 476 121.9 3.6e-26 gi|156544678|ref|XP_001605231.1| PREDICTED: simila ( 175) 406 105.1 3.7e-21 gi|190623850|gb|EDV39374.1| GF25280 [Drosophila an ( 244) 390 101.3 7.1e-20 gi|116116974|gb|EAA00210.3| AGAP012122-PA [Anophel ( 244) 388 100.8 9.9e-20 gi|167867047|gb|EDS30430.1| DNA-directed RNA polym ( 239) 387 100.6 1.2e-19 gi|190654200|gb|EDV51443.1| GG15519 [Drosophila er ( 240) 387 100.6 1.2e-19 gi|194119092|gb|EDW41135.1| GM25288 [Drosophila se ( 240) 387 100.6 1.2e-19 gi|194180559|gb|EDW94170.1| GE21834 [Drosophila ya ( 240) 387 100.6 1.2e-19 gi|194115536|gb|EDW37579.1| GL16275 [Drosophila pe ( 240) 385 100.1 1.6e-19 gi|54640887|gb|EAL29638.1| GA20275 [Drosophila pse ( 240) 385 100.1 1.6e-19 gi|194163958|gb|EDW78859.1| GK12491 [Drosophila wi ( 245) 385 100.1 1.6e-19 gi|212001853|gb|EEB07513.1| RNA polymerase III sub ( 205) 383 99.6 2e-19 gi|7294695|gb|AAF50032.1| CG7339 [Drosophila melan ( 240) 382 99.4 2.7e-19 gi|193664626|ref|XP_001946408.1| PREDICTED: simila ( 203) 378 98.4 4.5e-19 gi|193898211|gb|EDV97077.1| GH14863 [Drosophila gr ( 246) 378 98.4 5.3e-19 gi|193920456|gb|EDW19323.1| GI13714 [Drosophila mo ( 245) 367 95.8 3.3e-18 >>gi|148672600|gb|EDL04547.1| polymerase (RNA) III (DNA (148 aa) initn: 784 init1: 784 opt: 784 Z-score: 1028.5 bits: 195.9 E(): 1.4e-48 Smith-Waterman score: 784; 100.000% identity (100.000% similar) in 115 aa overlap (1-115:34-148) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|148 QGMEHPTPKVIHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK 70 80 90 100 110 120 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::::::::::::::::: gi|148 KEAPYTLVGSISEPGLGLLSWWTSN 130 140 >>gi|149065823|gb|EDM15696.1| polymerase (RNA) III (DNA (196 aa) initn: 784 init1: 784 opt: 784 Z-score: 1026.6 bits: 196.0 E(): 1.8e-48 Smith-Waterman score: 784; 100.000% identity (100.000% similar) in 115 aa overlap (1-115:82-196) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|149 FPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::::::::::::::::: gi|149 KEAPYTLVGSISEPGLGLLSWWTSN 180 190 >>gi|29427995|sp|Q9D2C6.2|RPC8_MOUSE RecName: Full=DNA-d (204 aa) initn: 784 init1: 784 opt: 784 Z-score: 1026.4 bits: 196.0 E(): 1.8e-48 Smith-Waterman score: 784; 100.000% identity (100.000% similar) in 115 aa overlap (1-115:90-204) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|294 FPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::::::::::::::::: gi|294 KEAPYTLVGSISEPGLGLLSWWTSN 180 190 200 >>gi|74220193|dbj|BAE31279.1| unnamed protein product [M (204 aa) initn: 775 init1: 775 opt: 775 Z-score: 1014.7 bits: 193.8 E(): 8.2e-48 Smith-Waterman score: 775; 99.130% identity (99.130% similar) in 115 aa overlap (1-115:90-204) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|742 FPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|742 FDEAEQVWVWEYETGEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::::::::::::::::: gi|742 KEAPYTLVGSISEPGLGLLSWWTSN 180 190 200 >>gi|73968962|ref|XP_849136.1| PREDICTED: similar to pol (204 aa) initn: 773 init1: 773 opt: 773 Z-score: 1012.1 bits: 193.4 E(): 1.2e-47 Smith-Waterman score: 773; 98.261% identity (100.000% similar) in 115 aa overlap (1-115:90-204) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|739 FPGDGASHTKVHFRYVVFHPFLDEILIGRIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|739 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSEELPK 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::::::::::::::::. gi|739 KEAPYTLVGSISEPGLGLLSWWTSS 180 190 200 >>gi|90077470|dbj|BAE88415.1| unnamed protein product [M (204 aa) initn: 772 init1: 772 opt: 772 Z-score: 1010.8 bits: 193.1 E(): 1.4e-47 Smith-Waterman score: 772; 97.391% identity (100.000% similar) in 115 aa overlap (1-115:90-204) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|900 FPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK :::::::::::::::::::::::::::::::::::::::::::::::::.:..::::::: gi|900 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPK 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::::::::::::::::: gi|900 KEAPYTLVGSISEPGLGLLSWWTSN 180 190 200 >>gi|29428071|sp|Q9Y535.1|RPC8_HUMAN RecName: Full=DNA-d (204 aa) initn: 772 init1: 772 opt: 772 Z-score: 1010.8 bits: 193.1 E(): 1.4e-47 Smith-Waterman score: 772; 97.391% identity (100.000% similar) in 115 aa overlap (1-115:90-204) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|294 FPGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK :::::::::::::::::::::::::::::::::::::::::::::::::.:..::::::: gi|294 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPK 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::::::::::::::::: gi|294 KEAPYTLVGSISEPGLGLLSWWTSN 180 190 200 >>gi|122136999|sp|Q2T9X1.1|RPC8_BOVIN RecName: Full=DNA- (204 aa) initn: 767 init1: 767 opt: 767 Z-score: 1004.3 bits: 191.9 E(): 3.1e-47 Smith-Waterman score: 767; 96.522% identity (99.130% similar) in 115 aa overlap (1-115:90-204) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|122 FPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK :::::::::::::::::::::::: :::.::::::::::::::::::::::::::::::: gi|122 FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSEELPK 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN :::::::.::::::::::::::::. gi|122 KEAPYTLMGSISEPGLGLLSWWTSS 180 190 200 >>gi|194037188|ref|XP_001929168.1| PREDICTED: similar to (204 aa) initn: 766 init1: 766 opt: 766 Z-score: 1003.0 bits: 191.7 E(): 3.7e-47 Smith-Waterman score: 766; 96.522% identity (99.130% similar) in 115 aa overlap (1-115:90-204) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|194 FPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::. gi|194 FDEAEQVWVWEYETEEGAHDLYMDTGEELRFRVVDESFVDTSPTGPSSAEAASSSEELPR 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::: ::::::::::::. gi|194 KEAPYTLVGSICEPGLGLLSWWTSS 180 190 200 >>gi|149743078|ref|XP_001502570.1| PREDICTED: similar to (204 aa) initn: 764 init1: 764 opt: 764 Z-score: 1000.4 bits: 191.2 E(): 5.2e-47 Smith-Waterman score: 764; 96.522% identity (100.000% similar) in 115 aa overlap (1-115:90-204) 10 20 30 mKIAA1 KGCSPEGVHVSLGFFDDILIPPESLQQPAK :::::::::::::::::::::::::::::: gi|149 FPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK ::..:::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|149 FDDTEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSEELPK 120 130 140 150 160 170 100 110 mKIAA1 KEAPYTLVGSISEPGLGLLSWWTSN ::::::::::::::::::::::::. gi|149 KEAPYTLVGSISEPGLGLLSWWTSS 180 190 200 115 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 08:04:23 2009 done: Sun Mar 15 08:08:08 2009 Total Scan time: 535.120 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]