FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00366.ptfa, 264 aa
 vs ./tmplib.26680 library

1768753 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6415+/-0.00386; mu= 11.3191+/- 0.257
 mean_var=71.1418+/-16.698, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1521

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00289  ( 555 res)   mie30090                   ( 555)  330   81 9.5e-17


>>mFLJ00289  ( 555 res)   mie30090                        (555 aa)
 initn: 342 init1: 111 opt: 330  Z-score: 393.1  bits: 81.5 E(): 9.5e-17
Smith-Waterman score: 397;  32.189% identity (35.211% ungapped) in 233 aa overlap (39-257:45-271)

       10        20        30        40        50        60        
mFLJ00 SLVLLGSSWGCGVPAITPALSYNQRIVNGENAVPGSWPWQVSLQDNTGFHFCGGSLISPN
                                     :..:: ::::.:.. . : :.:.:::.. .
mFLJ00 VGAVVVIEGLQAAQRACGQRGPGPPEPQEGNTLPGEWPWQASVRRQ-GVHICSGSLVADT
           20        30        40        50        60         70   

       70             80        90       100       110        120  
mFLJ00 WVVTAAHC-----QVTPGRHFVVLGEYDRSSNAEPVQVLSIARAITHPN-WNANTMNNDL
       ::.:::::      .  .   ::::   . ...  .. ...: :.  :. .:  ....::
mFLJ00 WVLTAAHCFEKMATAELSSWSVVLGSLKQEGQSPGAEEVGVA-ALQLPKAYNHYSQGSDL
            80        90       100       110        120       130  

            130       140       150       160         170       180
mFLJ00 TLLKLASPARYTAQVSPVCLASTNEALPSGLTCVTTGWGR-ISGVG-NVTPARLQQVVLP
       .::.:. :   :.:.. .:: . .  .: : .: .::: .  : :. ..   ::. .  :
mFLJ00 ALLQLTHP---TVQTT-LCLPQPTYHFPFGASCWATGWDQNTSDVSRTLRNLRLRLISRP
            140           150       160       170       180        

                190        200         210       220        230    
mFLJ00 LVTV--NQCRQYW-GARITDAMICAGGS-GASS-CQGDSGGPLVCQKGNT-WVLIGIVSW
         .   :. .:   .     .:.:.:.. : .. ::::::::..:.. .  :: .::.:.
mFLJ00 TCNCLYNRLHQRLLSNPARPGMLCGGAQPGEQGPCQGDSGGPVMCREPDGHWVQVGIISF
      190       200       210       220       230       240        

          240       250       260                                  
mFLJ00 GTKNCNIQAPAMYTRVSKFSTWINQVMAYN                              
        .:  . ..:.. : ..  :.:..                                    
mFLJ00 TSKCAQEDTPVLLTDMAVHSSWLQAHVHEAAFLVQAPGVVKMSDENSCVACGSLRSAGPQ
      250       260       270       280       290       300        




264 residues in 1 query   sequences
1768753 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:09:43 2006 done: Mon Mar 27 10:09:44 2006
 Scan time:  0.490 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]