FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00289.ptfa, 555 aa
 vs ./tmplib.26680 library

1768462 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6613+/-0.00425; mu= 17.7216+/- 0.285
 mean_var=90.9266+/-20.855, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1345

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00366  ( 264 res)   mie37001                   ( 264)  330   74 2.3e-14


>>mFLJ00366  ( 264 res)   mie37001                        (264 aa)
 initn: 342 init1: 111 opt: 330  Z-score: 350.2  bits: 73.5 E(): 2.3e-14
Smith-Waterman score: 397;  32.189% identity (35.211% ungapped) in 233 aa overlap (45-271:39-257)

           20        30        40        50        60         70   
mFLJ00 VGAVVVIEGLQAAQRACGQRGPGPPEPQEGNTLPGEWPWQASVRRQ-GVHICSGSLVADT
                                     :..:: ::::.:.. . : :.:.:::.. .
mFLJ00 SLVLLGSSWGCGVPAITPALSYNQRIVNGENAVPGSWPWQVSLQDNTGFHFCGGSLISPN
       10        20        30        40        50        60        

            80        90       100       110        120       130  
mFLJ00 WVLTAAHCFEKMATAELSSWSVVLGSLKQEGQSPGAEEVGVA-ALQLPKAYNHYSQGSDL
       ::.:::::   ..:   .   ::::   . ...  .. ...: :.  :. .:  ....::
mFLJ00 WVVTAAHC---QVTP--GRHFVVLGEYDRSSNAEPVQVLSIARAITHPN-WNANTMNNDL
       70           80          90       100       110        120  

            140           150       160       170       180        
mFLJ00 ALLQLTHP---TVQTT-LCLPQPTYHFPFGASCWATGWDQNTSDVSRTLRNLRLRLISRP
       .::.:. :   :.:.. .:: . .  .: : .: .::: .  : :. ..   ::. .  :
mFLJ00 TLLKLASPARYTAQVSPVCLASTNEALPSGLTCVTTGWGR-ISGVG-NVTPARLQQVVLP
            130       140       150       160         170       180

      190       200       210       220       230       240        
mFLJ00 TCNCLYNRLHQRLLSNPARPGMLCGGAQPGEQGPCQGDSGGPVMCREPDGHWVQVGIISF
         .   :. .:   .     .:.:.:.. . .  ::::::::..:.. .  :: .::.:.
mFLJ00 LVTV--NQCRQYWGAR-ITDAMICAGGSGASS--CQGDSGGPLVCQKGNT-WVLIGIVSW
                190        200         210       220        230    

      250       260       270       280       290       300        
mFLJ00 TSKCAQEDTPVLLTDMAVHSSWLQAHVHEAAFLVQAPGVVKMSDENSCVACGSLRSAGPQ
        .:  . ..:.. : ..  :.:..                                    
mFLJ00 GTKNCNIQAPAMYTRVSKFSTWINQVMAYN                              
          240       250       260                                  




555 residues in 1 query   sequences
1768462 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:09:04 2006 done: Mon Mar 27 10:09:05 2006
 Scan time:  0.740 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]