FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1539.ptfa, 231 aa
 vs ./tmplib.26680 library

1768786 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.5855+/-0.00407; mu= 7.3607+/- 0.273
 mean_var=83.4285+/-19.440, 0's: 0 Z-trim: 2  B-trim: 25 in 1/35
 Lambda= 0.1404

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1370  ( 1099 res)   mbh00781                  (1099)  815  174 1.7e-44


>>mKIAA1370  ( 1099 res)   mbh00781                       (1099 aa)
 initn: 846 init1: 570 opt: 815  Z-score: 891.4  bits: 174.5 E(): 1.7e-44
Smith-Waterman score: 815;  53.219% identity (55.605% ungapped) in 233 aa overlap (7-229:865-1097)

                                       10           20        30   
mKIAA1                         RRLKGARRLKLSSLR---TLRKGPGLLSPPSASPFP
                                     : :. .: :   .. . : .   :  :   
mKIAA1 QTGLPLLSSPVPQRKTQSGCFDLDASLLHLRSLSSKSSRPCLNIDEDPDVHEKPFLSSSA
          840       850       860       870       880       890    

            40        50        60        70        80        90   
mKIAA1 TPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQN
        : .: .::::::::.:  :. : : ..:::::.::::..:: :.:::: :.:..::..:
mKIAA1 PPITSLSLLGNFEESVLNYRLDPLGIVDGFTAEVGASGTFCPTHLTLPVEVSFYSVSDDN
          900       910       920       930       940       950    

           100       110       120       130       140       150   
mKIAA1 APAPFLGVVDLTPLGRKGYSVPKVGTIQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLR
       ::.:..::. :  ::..:: ::  :::::::::::.::::::.:..:.  ::: :.::::
mKIAA1 APSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVVYDLRGMPANHQTFLR
          960       970       980       990      1000      1010    

           160              170       180       190       200      
mKIAA1 HRLFLVPVGEEG-------NASPTHRLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLE
       .: : ::: .:        :.. : .:: ::.::::.::.::.. :: :.::::::.:.:
mKIAA1 QRTFSVPVKQEMKRSINKENVQHTAQLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSME
         1020      1030      1040      1050      1060      1070    

        210       220       230 
mKIAA1 LDTGLPYELQAVTEAPHNPRYSPLP
       .:.:  :::.. ::.: ::..::  
mKIAA1 VDSGAAYELKSYTESPTNPQFSPRC
         1080      1090         




231 residues in 1 query   sequences
1768786 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:47:38 2006 done: Mon Mar 27 10:47:38 2006
 Scan time:  0.480 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]