FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4200.ptfa, 414 aa vs ./tmplib.26680 library 1768603 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.0596+/-0.0052; mu= 8.5497+/- 0.347 mean_var=126.2254+/-28.772, 0's: 0 Z-trim: 7 B-trim: 0 in 0/36 Lambda= 0.1142 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1415 ( 1665 res) mib23074 (1665) 504 94 5.6e-20 mKIAA4040 ( 1035 res) mic20095 (1035) 227 49 2.2e-06 mKIAA0981 ( 2117 res) mib04069 (2117) 160 38 0.0075 >>mKIAA1415 ( 1665 res) mib23074 (1665 aa) initn: 543 init1: 329 opt: 504 Z-score: 451.0 bits: 94.4 E(): 5.6e-20 Smith-Waterman score: 506; 30.343% identity (32.764% ungapped) in 379 aa overlap (28-387:402-771) 10 20 30 40 50 mKIAA4 RAVRNMEEGSSGGSGSSDSNAGGSGGVQQRE-----LERMAEVLVT--GEQLRLRLH .::: .:: : :... ::.: . mKIAA1 HNTAKNKWFVCMAKTAEEKQKWLDALIREREQRESLKLGMERDAYVMIAEKGEKLYHMMM 380 390 400 410 420 430 60 70 80 90 100 mKIAA4 EEKV--IKDRRHHLKTYPNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCD .:: :::::..:.: :.::...:.. ::.: : : : ...: : : . :::::: : mKIAA1 SKKVNLIKDRRRKLSTVPKCFLGNEFVAWLLEIGEISKTEEGVNLGQALLENGIIHHVSD 440 450 460 470 480 490 110 120 130 140 150 160 mKIAA4 EHKEFKDVKLFYRFRKDDGTFALDSEVKAFM-RGQRLYEKLMSPETTLLQPREEEGVKYE .:. ::. ...:::: ::::. ::.. .: .: ::: .: : . ... :. . :. mKIAA1 KHQ-FKNEQVMYRFRYDDGTYKARSELEDIMSKGVRLYCRLHSLYAPVIKDRDYHLKTYK 500 510 520 530 540 550 170 180 190 200 210 220 mKIAA4 RTFMASEFLDWLVQEGEATTRKEAEQLCHRLMDHGIIQHVSNKHPFVDSNLLYQFRMNFR . .:...:::. .:. ::.:: : : ..:...:: .: : : . ..:. . mKIAA1 SVVPGSKLVDWLLAQGDCQTREEAVALGVGLCNNGFMHHVLEKSEFKDESQYFRFHAD-- 560 570 580 590 600 230 240 250 260 270 280 mKIAA4 RRRRLMELLNETSPSSQETHDSPFC---LRKQSHDSRKSTSF-MSVSPSKEIKIVSAVRR :. . .: ..: .: . : :. . .. ... ... .:..:.: mKIAA1 -----EEMEGTSSKNKQLRNDFKLVENILAKRLLIPPQEDDYGFDLEEKNKAVVVKSVQR 610 620 630 640 650 660 290 300 310 320 330 mKIAA4 SSMSSCG--SSGY--FSSSPTLSSSPPVLCNPKSVLKRPVTSEE-LLTPGAPYARKTFTI .:.. . ..: .: . : : . . ...:.. :.. : : :..:. . mKIAA1 GSLAEMAGLQAGRKIYSINEDLVFLRP-FSEVETILNQFFCSRRPLRLLVATKAKETIKV 670 680 690 700 710 720 340 350 360 370 380 390 mKIAA4 VGDAVGWGFVVRGSKPCHIQAVDPSGPAAAAGMKVCQFVVSVNGLNVLNVDYRTVSNLIL . .: .::. : . :: .. :.:::. . : ...::: .: : mKIAA1 PDHPEALSFQIRGTAPPCVFAVGRGSEAVAAGLCAGQCILKVNGTSVANDGALEVLEHFQ 730 740 750 760 770 780 400 410 mKIAA4 TGPRTIVMEVMEELDC mKIAA1 AFRNHREEALGLYQWVYHSHEDAQLARASQGAPDEDPQEDDQPDSALPLLSLGPQLSLHE 790 800 810 820 830 840 >>mKIAA4040 ( 1035 res) mic20095 (1035 aa) initn: 193 init1: 167 opt: 227 Z-score: 207.0 bits: 48.6 E(): 2.2e-06 Smith-Waterman score: 227; 37.634% identity (39.326% ungapped) in 93 aa overlap (37-126:226-317) 10 20 30 40 50 60 mKIAA4 EEGSSGGSGSSDSNAGGSGGVQQRELERMAEVLVTGEQLRLRL--HEEKVIKDRRHHLKT ..: .:. ::. . . ..:.::..:::: mKIAA4 DRIPDKENTPLIEPHVPLRPAHTITKVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKT 200 210 220 230 240 250 70 80 90 100 110 120 mKIAA4 YPNCFVAKELIDWLIEHKE-ASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFR : .: :. ::.::.:.. . .: :. . : : . :...:: :....:.: ::::: mKIAA4 YRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHV-DQERHFQDKYLFYRFL 260 270 280 290 300 310 130 140 150 160 170 180 mKIAA4 KDDGTFALDSEVKAFMRGQRLYEKLMSPETTLLQPREEEGVKYERTFMASEFLDWLVQEG :. mKIAA4 DDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDE 320 330 340 350 360 370 >>mKIAA0981 ( 2117 res) mib04069 (2117 aa) initn: 195 init1: 160 opt: 160 Z-score: 143.5 bits: 37.9 E(): 0.0075 Smith-Waterman score: 160; 36.364% identity (36.364% ungapped) in 66 aa overlap (56-121:392-457) 30 40 50 60 70 80 mKIAA4 GVQQRELERMAEVLVTGEQLRLRLHEEKVIKDRRHHLKTYPNCFVAKELIDWLIEHKEAS .:.:. :.:.:::.:.:::..:::.. . . mKIAA0 TEDERKILLDSAQLKDLWKKICHHTSGMEFQDHRYWLRTHPNCIVGKELVNWLIRNGHIA 370 380 390 400 410 420 90 100 110 120 130 140 mKIAA4 DRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKDDGTFALDSEVKAFMRGQRLY : :: . : ..: . : . . :.: .:: mKIAA0 TRAQAIAIGQAMVDGRWLDCVSHHDQLFRDEYALYRPLQSTEFSETPSPDSDSVNSVEGH 430 440 450 460 470 480 150 160 170 180 190 200 mKIAA4 EKLMSPETTLLQPREEEGVKYERTFMASEFLDWLVQEGEATTRKEAEQLCHRLMDHGIIQ mKIAA0 SEPSWFKDIKFDDSDTEQIAEEGDDNLANSASPSKRTSVSSFQSTVDSDSAASISLNVEL 490 500 510 520 530 540 414 residues in 1 query sequences 1768603 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:04:49 2006 done: Mon Mar 27 11:04:50 2006 Scan time: 0.660 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]