FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4038.ptfa, 356 aa
 vs ./tmplib.26680 library

1768661 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1419+/-0.00459; mu= 17.6141+/- 0.308
 mean_var=103.6584+/-23.757, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1260

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0272  ( 740 res)   mbh03915                   ( 740)  588  118 2.4e-27


>>mKIAA0272  ( 740 res)   mbh03915                        (740 aa)
 initn: 725 init1: 149 opt: 588  Z-score: 583.4  bits: 117.5 E(): 2.4e-27
Smith-Waterman score: 649;  40.594% identity (44.727% ungapped) in 303 aa overlap (18-300:2-296)

               10        20        30        40        50        60
mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV
                        : ::     : :  : : :  .:::::.:: :.. :: .:.::
mKIAA0                 PGHGAERPLRGKM--NKG-WLELESDPGLFTLLVEDFGVKGVQV
                               10           20        30        40 

               70        80        90                100       110 
mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPA---------GSVVQDSRLETIFFAKQV
       :::..:. .      ::.:.::::::   ..            ::..:. ....:::.:.
mKIAA0 EEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQL
              50           60        70        80        90        

             120       130       140       150       160       170 
mKIAA4 INNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSF
       : :.:::.:..::::::.. :  :: :::..:.:...:.   :: :..:.  . ..::: 
mKIAA0 IPNSCATHALLSVLLNCSNVD--LGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAHNSH
      100       110         120       130       140       150      

             180           190       200       210       220       
mKIAA4 ARQQMFEFDTK----TPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDD-WIT
       :: .  ..  :    . ..  .:::::::::..:::.:::::.  ::: :  ..:. :  
mKIAA0 ARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRLFELDGLKVYPIDHGPWGEDEEWTD
        160       170       180       190       200       210      

        230       240           250       260         270       280
mKIAA4 AVRPVIEKRIQKYSEGE----IRFNLMAIVSDRKMIYEQK--IAELQRQLAEEPMDTDQG
        .: :: .::   . ::    :::::::.: ::.. :: .  . ...:: . : ..    
mKIAA0 KARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIKYETRLHVLKVNRQTVLEALQQLIR
        220       230       240       250       260       270      

              290       300       310       320       330       340
mKIAA4 STVLSAIQSEVARNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLV
        :    ::.. .....: ::                                        
mKIAA0 VTQPELIQTHKSQESQLPEESKPASSKSPLGLEAGRTPVASECTQTDGAEEVAGSCPQTT
        280       290       300       310       320       330      




356 residues in 1 query   sequences
1768661 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:54 2006 done: Mon Mar 27 10:59:55 2006
 Scan time:  0.590 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]