# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mie24050.fasta.nr -Q ../query/mKIAA4038.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4038, 356 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920513 sequences Expectation_n fit: rho(ln(x))= 5.0647+/-0.000183; mu= 10.9125+/- 0.010 mean_var=75.3454+/-14.633, 0's: 40 Z-trim: 45 B-trim: 264 in 1/68 Lambda= 0.147756 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148707562|gb|EDL39509.1| ubiquitin carboxyl-ter ( 353) 2331 506.0 4.7e-141 gi|5738242|gb|AAD50311.1|AF175903_1 ubiquitin C-te ( 328) 2154 468.2 1e-129 gi|119611639|gb|EAW91233.1| ubiquitin carboxyl-ter ( 396) 2144 466.2 5.2e-129 gi|18203574|sp|Q9WUP7.2|UCHL5_MOUSE RecName: Full= ( 329) 2142 465.7 6e-129 gi|149058446|gb|EDM09603.1| rCG45997 [Rattus norve ( 329) 2127 462.5 5.5e-128 gi|4878011|gb|AAD31534.1|AF148447_1 ubiquitin C-te ( 329) 2126 462.3 6.4e-128 gi|15930175|gb|AAH15521.1| Ubiquitin carboxyl-term ( 328) 2109 458.7 7.9e-127 gi|30584639|gb|AAP36572.1| Homo sapiens ubiquitin ( 329) 2109 458.7 7.9e-127 gi|18203607|sp|Q9XSJ0.1|UCHL5_BOVIN RecName: Full= ( 328) 2106 458.0 1.2e-126 gi|75773502|gb|AAI05167.1| Ubiquitin carboxyl-term ( 328) 2101 457.0 2.6e-126 gi|108936023|sp|Q9Y5K5.3|UCHL5_HUMAN RecName: Full ( 329) 2097 456.1 4.7e-126 gi|122131872|sp|Q06AT3.1|UCHL5_PIG RecName: Full=U ( 329) 2094 455.5 7.3e-126 gi|189069388|dbj|BAG37054.1| unnamed protein produ ( 329) 2091 454.8 1.1e-125 gi|74006052|ref|XP_536116.2| PREDICTED: similar to ( 329) 2090 454.6 1.3e-125 gi|119611644|gb|EAW91238.1| ubiquitin carboxyl-ter ( 383) 2079 452.3 7.5e-125 gi|119611640|gb|EAW91234.1| ubiquitin carboxyl-ter ( 394) 2061 448.5 1.1e-123 gi|57032796|gb|AAH88841.1| Ubiquitin carboxyl-term ( 324) 2044 444.8 1.2e-122 gi|126306373|ref|XP_001367376.1| PREDICTED: simila ( 329) 2044 444.8 1.2e-122 gi|55859540|emb|CAI10830.1| ubiquitin carboxyl-ter ( 316) 2032 442.2 6.7e-122 gi|7688691|gb|AAF67486.1|AF157320_1 AD-019 protein ( 316) 2027 441.2 1.4e-121 gi|19263475|gb|AAH25369.1| UCHL5 protein [Homo sap ( 326) 2026 441.0 1.7e-121 gi|109019038|ref|XP_001112676.1| PREDICTED: simila ( 317) 2020 439.7 4e-121 gi|4929609|gb|AAD34065.1|AF151828_1 CGI-70 protein ( 316) 2015 438.6 8.3e-121 gi|12841686|dbj|BAB25312.1| unnamed protein produc ( 307) 1999 435.2 8.6e-120 gi|114568519|ref|XP_514069.2| PREDICTED: similar t ( 537) 1949 424.7 2.1e-116 gi|194227370|ref|XP_001492151.2| PREDICTED: simila ( 307) 1927 419.8 3.6e-115 gi|47217741|emb|CAG03693.1| unnamed protein produc ( 330) 1925 419.4 5.1e-115 gi|45709482|gb|AAH67545.1| Ubiquitin carboxyl-term ( 329) 1919 418.2 1.2e-114 gi|209730448|gb|ACI66093.1| Ubiquitin carboxyl-ter ( 356) 1907 415.6 7.7e-114 gi|149636388|ref|XP_001516535.1| PREDICTED: simila ( 311) 1904 414.9 1.1e-113 gi|209168633|gb|ACI42313.1| ubiquitin carboxy-term ( 329) 1894 412.8 5e-113 gi|115292033|gb|AAI22496.1| LOC733154 protein [Xen ( 329) 1880 409.8 3.9e-112 gi|58177865|gb|AAH89167.1| LOC733154 protein [Xeno ( 325) 1865 406.6 3.6e-111 gi|224057028|ref|XP_002191860.1| PREDICTED: ubiqui ( 354) 1854 404.3 1.9e-110 gi|210087278|gb|EEA35660.1| hypothetical protein B ( 328) 1580 345.9 7e-93 gi|55859537|emb|CAI10827.1| ubiquitin carboxyl-ter ( 258) 1563 342.2 7.2e-92 gi|68161114|gb|AAY86988.1| ubiquitin C-terminal hy ( 265) 1553 340.1 3.2e-91 gi|215492664|gb|EEC02305.1| ubiquitin C-terminal h ( 327) 1471 322.7 6.9e-86 gi|108872766|gb|EAT36991.1| ubiquitin carboxyl-ter ( 326) 1448 317.7 2e-84 gi|91079883|ref|XP_967733.1| PREDICTED: similar to ( 323) 1444 316.9 3.7e-84 gi|55859538|emb|CAI10828.1| ubiquitin carboxyl-ter ( 368) 1422 312.3 1e-82 gi|222093470|gb|ACM43511.1| ubiquitin carboxyl-ter ( 337) 1417 311.2 2e-82 gi|167878200|gb|EDS41583.1| ubiquitin carboxyl-ter ( 323) 1408 309.2 7.5e-82 gi|212517318|gb|EEB19229.1| ubiquitin carboxyl-ter ( 325) 1408 309.2 7.5e-82 gi|55731563|emb|CAH92490.1| hypothetical protein [ ( 355) 1391 305.6 9.9e-81 gi|55238347|gb|EAA11802.2| AGAP005540-PA [Anophele ( 322) 1374 302.0 1.1e-79 gi|221123773|ref|XP_002164730.1| PREDICTED: simila ( 342) 1369 300.9 2.5e-79 gi|53131115|emb|CAG31792.1| hypothetical protein [ ( 297) 1362 299.4 6.3e-79 gi|54641365|gb|EAL30115.1| GA17448 [Drosophila pse ( 324) 1347 296.2 6.2e-78 gi|194118827|gb|EDW40870.1| GM24867 [Drosophila se ( 324) 1344 295.6 9.6e-78 >>gi|148707562|gb|EDL39509.1| ubiquitin carboxyl-termina (353 aa) initn: 2331 init1: 2331 opt: 2331 Z-score: 2688.6 bits: 506.0 E(): 4.7e-141 Smith-Waterman score: 2331; 100.000% identity (100.000% similar) in 353 aa overlap (4-356:1-353) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSTVLSAIQSEVARNQMLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSTVLSAIQSEVARNQMLIEE 240 250 260 270 280 290 310 320 330 340 350 mKIAA4 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK 300 310 320 330 340 350 >>gi|5738242|gb|AAD50311.1|AF175903_1 ubiquitin C-termin (328 aa) initn: 2154 init1: 2154 opt: 2154 Z-score: 2485.1 bits: 468.2 E(): 1e-129 Smith-Waterman score: 2154; 100.000% identity (100.000% similar) in 328 aa overlap (29-356:1-328) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV :::::::::::::::::::::::::::::::: gi|573 MSSNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|573 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|573 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|573 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSTVLSAIQSEVARNQMLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|573 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSTVLSAIQSEVARNQMLIEE 220 230 240 250 260 270 310 320 330 340 350 mKIAA4 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|573 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK 280 290 300 310 320 >>gi|119611639|gb|EAW91233.1| ubiquitin carboxyl-termina (396 aa) initn: 1641 init1: 1611 opt: 2144 Z-score: 2472.5 bits: 466.2 E(): 5.2e-129 Smith-Waterman score: 2144; 92.758% identity (96.657% similar) in 359 aa overlap (2-356:41-396) 10 20 mKIAA4 GLRPVAA---CAAGLRRARGGSGAVCVWSGT :: ::. :.. :: :::::: :: . . gi|119 ALSRAAGDGARRLSGSRRGDVWLTSSAAGLLRSVAGGSWCGGQLR-ARGGSGR-CV-ARA 20 30 40 50 60 30 40 50 60 70 80 mKIAA4 MSSNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQP :..::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|119 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 70 80 90 100 110 120 90 100 110 120 130 140 mKIAA4 GEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|119 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 130 140 150 160 170 180 150 160 170 180 190 200 mKIAA4 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTPAKEEDAFHFVSYVPVNGRLYELDG ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|119 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG 190 200 210 220 230 240 210 220 230 240 250 260 mKIAA4 LREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|119 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 250 260 270 280 290 300 270 280 290 300 310 320 mKIAA4 QLAEE-PMDTDQGSTVLSAIQSEVARNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELL ::::: :::::::...:::::::::.:::::::::::::::::::::::::::::::::: gi|119 QLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELL 310 320 330 340 350 360 330 340 350 mKIAA4 KTLAEHQQLIPLVEKAKEKQNAKKAQETK ::::::::::::::::::::::::::::: gi|119 KTLAEHQQLIPLVEKAKEKQNAKKAQETK 370 380 390 >>gi|18203574|sp|Q9WUP7.2|UCHL5_MOUSE RecName: Full=Ubiq (329 aa) initn: 1667 init1: 1637 opt: 2142 Z-score: 2471.3 bits: 465.7 E(): 6e-129 Smith-Waterman score: 2142; 99.696% identity (99.696% similar) in 329 aa overlap (29-356:1-329) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV :::::::::::::::::::::::::::::::: gi|182 MSSNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS 160 170 180 190 200 210 250 260 270 280 290 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGSTVLSAIQSEVARNQMLIE ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|182 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSTVLSAIQSEVARNQMLIE 220 230 240 250 260 270 300 310 320 330 340 350 mKIAA4 EEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 EEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK 280 290 300 310 320 >>gi|149058446|gb|EDM09603.1| rCG45997 [Rattus norvegicu (329 aa) initn: 1652 init1: 1622 opt: 2127 Z-score: 2454.0 bits: 462.5 E(): 5.5e-128 Smith-Waterman score: 2127; 99.088% identity (99.392% similar) in 329 aa overlap (29-356:1-329) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV :::::::::::::::::::::::::::::::: gi|149 MSSNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS 160 170 180 190 200 210 250 260 270 280 290 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGSTVLSAIQSEVARNQMLIE ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|149 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSTVLSAIQSEVARNQMLIE 220 230 240 250 260 270 300 310 320 330 340 350 mKIAA4 EEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK 280 290 300 310 320 >>gi|4878011|gb|AAD31534.1|AF148447_1 ubiquitin C-termin (329 aa) initn: 1651 init1: 1621 opt: 2126 Z-score: 2452.9 bits: 462.3 E(): 6.4e-128 Smith-Waterman score: 2126; 99.088% identity (99.392% similar) in 329 aa overlap (29-356:1-329) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV :::::::::::::::::::.::: :::::::: gi|487 MSSNAGEWCLMESDPGVFTKLIKRFGCRGAQV 10 20 30 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|487 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|487 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|487 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS 160 170 180 190 200 210 250 260 270 280 290 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGSTVLSAIQSEVARNQMLIE ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|487 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSTVLSAIQSEVARNQMLIE 220 230 240 250 260 270 300 310 320 330 340 350 mKIAA4 EEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|487 EEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK 280 290 300 310 320 >>gi|15930175|gb|AAH15521.1| Ubiquitin carboxyl-terminal (328 aa) initn: 2109 init1: 2109 opt: 2109 Z-score: 2433.3 bits: 458.7 E(): 7.9e-127 Smith-Waterman score: 2109; 96.951% identity (99.695% similar) in 328 aa overlap (29-356:1-328) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV :..::::::::::::::::::::::::::::: gi|159 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::.::::::::::::::::::::::::::::::::.::::::::::::::::: gi|159 EEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS ::: :::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|159 TKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYS 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSTVLSAIQSEVARNQMLIEE ::::::::::::::::::::::::::::::::::::::::...:::::::::.::::::: gi|159 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEE 220 230 240 250 260 270 310 320 330 340 350 mKIAA4 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK 280 290 300 310 320 >>gi|30584639|gb|AAP36572.1| Homo sapiens ubiquitin carb (329 aa) initn: 2109 init1: 2109 opt: 2109 Z-score: 2433.3 bits: 458.7 E(): 7.9e-127 Smith-Waterman score: 2109; 96.951% identity (99.695% similar) in 328 aa overlap (29-356:1-328) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV :..::::::::::::::::::::::::::::: gi|305 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::.::::::::::::::::::::::::::::::::.::::::::::::::::: gi|305 EEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS ::: :::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|305 TKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYS 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSTVLSAIQSEVARNQMLIEE ::::::::::::::::::::::::::::::::::::::::...:::::::::.::::::: gi|305 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEE 220 230 240 250 260 270 310 320 330 340 350 mKIAA4 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETKL 280 290 300 310 320 >>gi|18203607|sp|Q9XSJ0.1|UCHL5_BOVIN RecName: Full=Ubiq (328 aa) initn: 2106 init1: 2106 opt: 2106 Z-score: 2429.8 bits: 458.0 E(): 1.2e-126 Smith-Waterman score: 2106; 96.951% identity (99.695% similar) in 328 aa overlap (29-356:1-328) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV :..::::::::::::::::::::::::::::: gi|182 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::.::::::::::::::::::::::::::::::::.::::::::::::::::: gi|182 EEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS .:: :::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|182 AKTAAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYS 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSTVLSAIQSEVARNQMLIEE :::::::::::::::::::::::::::::::::::::::::..:::::::::.::::::: gi|182 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSNMLSAIQSEVAKNQMLIEE 220 230 240 250 260 270 310 320 330 340 350 mKIAA4 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK 280 290 300 310 320 >>gi|75773502|gb|AAI05167.1| Ubiquitin carboxyl-terminal (328 aa) initn: 2101 init1: 2101 opt: 2101 Z-score: 2424.1 bits: 457.0 E(): 2.6e-126 Smith-Waterman score: 2101; 96.646% identity (99.695% similar) in 328 aa overlap (29-356:1-328) 10 20 30 40 50 60 mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV :..::::::::::::::::::::::::::::: gi|757 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 70 80 90 100 110 120 mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQA :::::::::.::::::::::::::::::::::::::::::::.::::::::::::::::: gi|757 EEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|757 IVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 TKTPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYS .:: :::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|757 AKTAAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYS 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSTVLSAIQSEVARNQMLIEE :::::::::::::::::::::::::::::::::::::::::..:::::::::.::::::: gi|757 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSNMLSAIQSEVAKNQMLIEE 220 230 240 250 260 270 310 320 330 340 350 mKIAA4 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK :::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|757 EVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHKQLIPLVEKAKEKQNAKKAQETK 280 290 300 310 320 356 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 04:48:14 2009 done: Tue Mar 17 04:54:19 2009 Total Scan time: 836.330 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]