FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1372.ptfa, 173 aa
 vs ./tmplib.26680 library

1768844 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.5759+/-0.00384; mu= 9.7536+/- 0.258
 mean_var=63.5430+/-14.963, 0's: 0 Z-trim: 1  B-trim: 90 in 1/35
 Lambda= 0.1609

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1891  ( 1086 res)   mbh02730                  (1086)  580  143   3e-35


>>mKIAA1891  ( 1086 res)   mbh02730                       (1086 aa)
 initn: 604 init1: 580 opt: 580  Z-score: 725.2  bits: 143.3 E(): 3e-35
Smith-Waterman score: 580;  60.606% identity (60.606% ungapped) in 132 aa overlap (5-136:316-447)

                                         10        20        30    
mKIAA1                           VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVK
                                     ::::::.::::....: :.::::::::::.
mKIAA1 QHIPLQMITVLIRSLTTDPNVKDASMTQALCRMIDWLSWPLAQHVDTWVIALLKGLAAVQ
         290       300       310       320       330       340     

           40        50        60        70        80        90    
mKIAA1 KFSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVAS
       ::.:::.:.: ::: ::..: .:.:: .::.::..:::.:::: ::::...:::  .: :
mKIAA1 KFTILIDVTLLKIELVFNRLWFPLVRPGALAVLSHMLLSFQHSPEAFHVIVPHIVNLVHS
         350       360       370       380       390       400     

          100       110       120       130       140       150    
mKIAA1 LVKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPC
       . ..   :.:. : ::.::::::.... ::::::::..::.:                  
mKIAA1 FRSDGLPSSTAFLVQLTELVHCMMYHYSGFPDLYEPILEAVKDFPKPSEEKIKLILNQSA
         410       420       430       440       450       460     

          160       170                                            
mKIAA1 VLSSPEHERRLAHRTRLVS                                         
                                                                   
mKIAA1 WTSQSNALASCLSRLSGKSETGKTGLINLGNTCYMNSVLQALFMATEFRRQVLSLNLNGC
         470       480       490       500       510       520     




173 residues in 1 query   sequences
1768844 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:42:40 2006 done: Mon Mar 27 10:42:40 2006
 Scan time:  0.390 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]