# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mie23079.fasta.nr -Q ../query/mKIAA1372.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1372, 173 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921378 sequences Expectation_n fit: rho(ln(x))= 4.5605+/-0.000179; mu= 9.6357+/- 0.010 mean_var=57.6947+/-11.533, 0's: 40 Z-trim: 41 B-trim: 6251 in 2/63 Lambda= 0.168852 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|149257589|ref|XP_891616.2| PREDICTED: ubiquitin (1009) 868 219.7 1e-54 gi|194679551|ref|XP_001252407.2| PREDICTED: simila ( 464) 863 218.2 1.3e-54 gi|148668864|gb|EDL01032.1| mCG129167 [Mus musculu ( 587) 861 217.8 2.2e-54 gi|73988105|ref|XP_542286.2| PREDICTED: similar to (1072) 863 218.5 2.5e-54 gi|46577708|sp|Q9P2H5.2|UBP35_HUMAN RecName: Full= (1017) 858 217.2 5.6e-54 gi|148746183|ref|NP_065849.1| ubiquitin specific p (1018) 858 217.2 5.7e-54 gi|119595462|gb|EAW75056.1| hCG27473 [Homo sapiens ( 749) 851 215.4 1.5e-53 gi|168278867|dbj|BAG11313.1| ubiquitin carboxyl-te ( 749) 851 215.4 1.5e-53 gi|109459079|ref|XP_238899.4| PREDICTED: similar t (1007) 852 215.8 1.5e-53 gi|126327730|ref|XP_001362965.1| PREDICTED: simila (1036) 787 199.9 9.2e-49 gi|224043711|ref|XP_002189432.1| PREDICTED: ubiqui ( 996) 784 199.2 1.5e-48 gi|118085252|ref|XP_417222.2| PREDICTED: similar t ( 997) 784 199.2 1.5e-48 gi|73983888|ref|XP_855729.1| PREDICTED: similar to ( 734) 583 150.1 6.4e-34 gi|151553558|gb|AAI48041.1| USP38 protein [Bos tau (1040) 584 150.5 7.1e-34 gi|149037936|gb|EDL92296.1| ubiquitin specific pro ( 501) 580 149.3 8e-34 gi|109075769|ref|XP_001092467.1| PREDICTED: simila ( 978) 583 150.2 8e-34 gi|114596193|ref|XP_001142656.1| PREDICTED: hypoth ( 979) 583 150.2 8e-34 gi|73983884|ref|XP_855663.1| PREDICTED: similar to ( 980) 583 150.2 8.1e-34 gi|73909113|gb|AAH39115.1| USP38 protein [Homo sap (1004) 583 150.2 8.2e-34 gi|114596195|ref|XP_001142522.1| PREDICTED: ubiqui (1004) 583 150.2 8.2e-34 gi|73983886|ref|XP_855693.1| PREDICTED: similar to (1005) 583 150.2 8.2e-34 gi|148678939|gb|EDL10886.1| mCG119517 [Mus musculu ( 523) 580 149.3 8.2e-34 gi|114596191|ref|XP_001142743.1| PREDICTED: hypoth (1016) 583 150.2 8.3e-34 gi|73983882|ref|XP_533279.2| PREDICTED: similar to (1037) 583 150.2 8.4e-34 gi|149698194|ref|XP_001502179.1| PREDICTED: ubiqui (1041) 583 150.2 8.4e-34 gi|109075765|ref|XP_001092815.1| PREDICTED: simila (1041) 583 150.2 8.4e-34 gi|114596187|ref|XP_517457.2| PREDICTED: hypotheti (1042) 583 150.2 8.4e-34 gi|38372866|sp|Q8NB14.2|UBP38_HUMAN RecName: Full= (1042) 583 150.2 8.4e-34 gi|74197938|dbj|BAC33659.2| unnamed protein produc ( 776) 580 149.4 1.1e-33 gi|26342456|dbj|BAC34890.1| unnamed protein produc (1042) 580 149.5 1.4e-33 gi|26344009|dbj|BAC35661.1| unnamed protein produc (1042) 580 149.5 1.4e-33 gi|38503388|sp|Q8BW70.2|UBP38_MOUSE RecName: Full= (1042) 580 149.5 1.4e-33 gi|224049305|ref|XP_002192723.1| PREDICTED: ubiqui (1019) 579 149.3 1.6e-33 gi|149635662|ref|XP_001513216.1| PREDICTED: hypoth ( 898) 578 149.0 1.8e-33 gi|126331343|ref|XP_001367345.1| PREDICTED: hypoth (1045) 576 148.5 2.8e-33 gi|189514882|ref|XP_001919108.1| PREDICTED: simila (1014) 571 147.3 6.3e-33 gi|118089854|ref|XP_420421.2| PREDICTED: hypotheti (1035) 571 147.3 6.4e-33 gi|51703474|gb|AAH81036.1| MGC81730 protein [Xenop (1037) 570 147.1 7.6e-33 gi|210102534|gb|EEA50582.1| hypothetical protein B ( 797) 568 146.5 8.6e-33 gi|210104335|gb|EEA52359.1| hypothetical protein B ( 972) 568 146.6 1e-32 gi|156219890|gb|EDO40765.1| predicted protein [Nem ( 981) 522 135.4 2.4e-29 gi|149068946|gb|EDM18498.1| similar to Ubiquitin c ( 102) 496 128.3 3.4e-28 gi|115752506|ref|XP_001178896.1| PREDICTED: hypoth (1119) 470 122.7 1.7e-25 gi|119918846|ref|XP_604057.3| PREDICTED: similar t ( 677) 361 96.0 1.2e-17 gi|47217343|emb|CAG11048.1| unnamed protein produc ( 735) 348 92.9 1.1e-16 gi|198415949|ref|XP_002124170.1| PREDICTED: simila ( 934) 345 92.2 2.2e-16 gi|215498493|gb|EEC07987.1| ubiquitin specific pro ( 844) 301 81.5 3.4e-13 gi|16553987|dbj|BAB71627.1| unnamed protein produc ( 706) 277 75.6 1.7e-11 gi|190619964|gb|EDV35488.1| GF12451 [Drosophila an ( 850) 269 73.7 7.7e-11 gi|193903523|gb|EDW02390.1| GH19918 [Drosophila gr ( 837) 256 70.5 6.8e-10 >>gi|149257589|ref|XP_891616.2| PREDICTED: ubiquitin spe (1009 aa) initn: 868 init1: 868 opt: 868 Z-score: 1138.5 bits: 219.7 E(): 1e-54 Smith-Waterman score: 868; 97.778% identity (98.519% similar) in 135 aa overlap (6-140:269-403) 10 20 30 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKK :::::::::::::::::::::::::::::: gi|149 HLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKK 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASL 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA1 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCV ::::::::::::::::::::::::::::::::::::::::: : . gi|149 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHIPNEDRIKQLLGQDAW 360 370 380 390 400 410 160 170 mKIAA1 LSSPEHERRLAHRTRLVS gi|149 TSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSVLQALFMASDFRHCVLRLTENNSQ 420 430 440 450 460 470 >>gi|194679551|ref|XP_001252407.2| PREDICTED: similar to (464 aa) initn: 863 init1: 863 opt: 863 Z-score: 1136.6 bits: 218.2 E(): 1.3e-54 Smith-Waterman score: 863; 97.778% identity (97.778% similar) in 135 aa overlap (6-140:269-403) 10 20 30 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKK :::::::::::::::::::::::::::::: gi|194 HLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKK 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASL :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|194 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASL 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA1 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCV ::::::::::::::::::::::::::::::::::::::::: : : gi|194 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAW 360 370 380 390 400 410 160 170 mKIAA1 LSSPEHERRLAHRTRLVS gi|194 TSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSILQALFMASE 420 430 440 450 460 >>gi|148668864|gb|EDL01032.1| mCG129167 [Mus musculus] (587 aa) initn: 861 init1: 861 opt: 861 Z-score: 1132.6 bits: 217.8 E(): 2.2e-54 Smith-Waterman score: 861; 97.761% identity (98.507% similar) in 134 aa overlap (7-140:1-134) 10 20 30 40 50 60 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYPIVR :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYPIVR 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 GAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASLVKEDSNSGTSCLEQLAELVHCMVFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASLVKEDSNSGTSCLEQLAELVHCMVFR 60 70 80 90 100 110 130 140 150 160 170 mKIAA1 FPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCVLSSPEHERRLAHRTRLVS :::::::::::::::: : . gi|148 FPGFPDLYEPVMEAIKDLHIPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGL 120 130 140 150 160 170 >>gi|73988105|ref|XP_542286.2| PREDICTED: similar to Ubi (1072 aa) initn: 863 init1: 863 opt: 863 Z-score: 1131.6 bits: 218.5 E(): 2.5e-54 Smith-Waterman score: 863; 97.778% identity (97.778% similar) in 135 aa overlap (6-140:334-468) 10 20 30 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKK :::::::::::::::::::::::::::::: gi|739 HLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKK 310 320 330 340 350 360 40 50 60 70 80 90 mKIAA1 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASL :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|739 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASL 370 380 390 400 410 420 100 110 120 130 140 150 mKIAA1 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCV ::::::::::::::::::::::::::::::::::::::::: : : gi|739 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAW 430 440 450 460 470 480 160 170 mKIAA1 LSSPEHERRLAHRTRLVS gi|739 TSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSVLQALFMASDFRHCVLRLTENNSQ 490 500 510 520 530 540 >>gi|46577708|sp|Q9P2H5.2|UBP35_HUMAN RecName: Full=Ubiq (1017 aa) initn: 858 init1: 858 opt: 858 Z-score: 1125.3 bits: 217.2 E(): 5.6e-54 Smith-Waterman score: 858; 97.037% identity (97.778% similar) in 135 aa overlap (6-140:268-402) 10 20 30 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKK :::::::::::::::::::::::::::::: gi|465 HLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKK 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASL :::::::::.:::::::::::::::::::::::::::::::::::::::::::: ::::: gi|465 FSILIEVSLTKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASL 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA1 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCV ::::::::::::::::::::::::::::::::::::::::: : : gi|465 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAW 360 370 380 390 400 410 160 170 mKIAA1 LSSPEHERRLAHRTRLVS gi|465 TSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSILQALFMASEFRHCVLRLTENNSQ 420 430 440 450 460 470 >>gi|148746183|ref|NP_065849.1| ubiquitin specific prote (1018 aa) initn: 858 init1: 858 opt: 858 Z-score: 1125.3 bits: 217.2 E(): 5.7e-54 Smith-Waterman score: 858; 97.037% identity (97.778% similar) in 135 aa overlap (6-140:269-403) 10 20 30 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKK :::::::::::::::::::::::::::::: gi|148 HLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKK 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASL :::::::::.:::::::::::::::::::::::::::::::::::::::::::: ::::: gi|148 FSILIEVSLTKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASL 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA1 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCV ::::::::::::::::::::::::::::::::::::::::: : : gi|148 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAW 360 370 380 390 400 410 160 170 mKIAA1 LSSPEHERRLAHRTRLVS gi|148 TSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSILQALFMASDFRHCVLRLTENNSQ 420 430 440 450 460 470 >>gi|119595462|gb|EAW75056.1| hCG27473 [Homo sapiens] (749 aa) initn: 851 init1: 851 opt: 851 Z-score: 1117.9 bits: 215.4 E(): 1.5e-53 Smith-Waterman score: 851; 97.015% identity (97.761% similar) in 134 aa overlap (7-140:1-134) 10 20 30 40 50 60 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYPIVR ::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|119 MIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLTKIEKVFSKLLYPIVR 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 GAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASLVKEDSNSGTSCLEQLAELVHCMVFR ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: gi|119 GAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASLVKEDSNSGTSCLEQLAELVHCMVFR 60 70 80 90 100 110 130 140 150 160 170 mKIAA1 FPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCVLSSPEHERRLAHRTRLVS :::::::::::::::: : : gi|119 FPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGL 120 130 140 150 160 170 >>gi|168278867|dbj|BAG11313.1| ubiquitin carboxyl-termin (749 aa) initn: 851 init1: 851 opt: 851 Z-score: 1117.9 bits: 215.4 E(): 1.5e-53 Smith-Waterman score: 851; 97.015% identity (97.761% similar) in 134 aa overlap (7-140:1-134) 10 20 30 40 50 60 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYPIVR ::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|168 MIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLTKIEKVFSKLLYPIVR 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 GAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASLVKEDSNSGTSCLEQLAELVHCMVFR ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: gi|168 GAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASLVKEDSNSGTSCLEQLAELVHCMVFR 60 70 80 90 100 110 130 140 150 160 170 mKIAA1 FPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCVLSSPEHERRLAHRTRLVS :::::::::::::::: : : gi|168 FPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGL 120 130 140 150 160 170 >>gi|109459079|ref|XP_238899.4| PREDICTED: similar to Ub (1007 aa) initn: 852 init1: 852 opt: 852 Z-score: 1117.5 bits: 215.8 E(): 1.5e-53 Smith-Waterman score: 852; 95.556% identity (97.037% similar) in 135 aa overlap (6-140:269-403) 10 20 30 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKK :::::::::::::::::::::::::::::: gi|109 HLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKK 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASL ::::::::::::::::::::::::::::: :::::::::::::::::::::::: :::.: gi|109 FSILIEVSLAKIEKVFSKLLYPIVRGAALCVLKYMLLTFQHSHEAFHLLLPHIPPMVAAL 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA1 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCV ::::::::::::::::::::::::::::::::::::::::: : . gi|109 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHIPNEDRIKQLLGQDAW 360 370 380 390 400 410 160 170 mKIAA1 LSSPEHERRLAHRTRLVS gi|109 TSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSVLQALFMASDFRHCVLRLTENNSQ 420 430 440 450 460 470 >>gi|126327730|ref|XP_001362965.1| PREDICTED: similar to (1036 aa) initn: 787 init1: 787 opt: 787 Z-score: 1031.7 bits: 199.9 E(): 9.2e-49 Smith-Waterman score: 787; 88.148% identity (94.815% similar) in 135 aa overlap (6-140:273-407) 10 20 30 mKIAA1 VFQECRMIDWVSWPLGKNIDKWIIALLKGLAAVKK :::::: ::::::::::::.:::::::::: gi|126 YVPLELMDGVIRNLTNDDSITDAQMMTAISRMIDWVCWPLGKNIDKWIITLLKGLAAVKK 250 260 270 280 290 300 40 50 60 70 80 90 mKIAA1 FSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPAMVASL :::::::::.::::::::::::::: :::::::::::.:::::::::::::::: ::::: gi|126 FSILIEVSLSKIEKVFSKLLYPIVREAALSVLKYMLLSFQHSHEAFHLLLPHIPKMVASL 310 320 330 340 350 360 100 110 120 130 140 150 mKIAA1 VKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKGLSVASAAPALCHMLTPCV ..::::: ..:::.::::.::::::: :::::::::::::: : : gi|126 AEEDSNSRANCLEELAELIHCMVFRFSGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQNAW 370 380 390 400 410 420 160 170 mKIAA1 LSSPEHERRLAHRTRLVS gi|126 TSQKNELVCFYPRLAAKSDTGKIGLINLGNTCYMNSVIQALFMASDFRHCVLHLPEDNSQ 430 440 450 460 470 480 173 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 23:24:17 2009 done: Fri Mar 13 23:28:39 2009 Total Scan time: 630.680 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]