# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mie08058.fasta.nr -Q ../query/mKIAA1057.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1057, 143 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921145 sequences Expectation_n fit: rho(ln(x))= 4.9558+/-0.000182; mu= 6.5178+/- 0.010 mean_var=62.6026+/-12.295, 0's: 42 Z-trim: 45 B-trim: 2086 in 2/63 Lambda= 0.162098 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|20987359|gb|AAH29660.1| USP24 protein [Homo sap ( 309) 969 234.7 7.8e-60 gi|7020329|dbj|BAA91084.1| unnamed protein product ( 309) 966 234.0 1.3e-59 gi|71051142|gb|AAH98851.1| Unknown (protein for IM ( 170) 963 233.1 1.3e-59 gi|148698872|gb|EDL30819.1| mCG121553, isoform CRA (2511) 973 236.2 2.2e-59 gi|212288549|sp|B1AY13.1|UBP24_MOUSE RecName: Full (2617) 973 236.2 2.3e-59 gi|109005102|ref|XP_001108457.1| PREDICTED: ubiqui (2434) 969 235.3 4.1e-59 gi|182888363|gb|AAI60138.1| Ubiquitin specific pep (2460) 969 235.3 4.1e-59 gi|114556815|ref|XP_513431.2| PREDICTED: ubiquitin (2475) 969 235.3 4.1e-59 gi|73956404|ref|XP_536697.2| PREDICTED: similar to (2527) 969 235.3 4.2e-59 gi|212276491|sp|Q9UPU5.3|UBP24_HUMAN RecName: Full (2620) 969 235.3 4.3e-59 gi|119627063|gb|EAX06658.1| hCG33036, isoform CRA_ (2684) 969 235.3 4.4e-59 gi|149035797|gb|EDL90478.1| rCG50414 [Rattus norve (1369) 963 233.7 6.8e-59 gi|194207409|ref|XP_001915653.1| PREDICTED: simila (2341) 963 233.9 1e-58 gi|224058297|ref|XP_002194265.1| PREDICTED: ubiqui (2470) 931 226.4 2e-56 gi|118094708|ref|XP_422499.2| PREDICTED: similar t (2742) 926 225.3 4.8e-56 gi|119627064|gb|EAX06659.1| hCG33036, isoform CRA_ (2677) 852 208.0 7.6e-51 gi|189533454|ref|XP_001920048.1| PREDICTED: simila ( 394) 833 203.0 3.5e-50 gi|118113517|ref|XP_427428.2| PREDICTED: similar t ( 252) 580 143.7 1.6e-32 gi|47219296|emb|CAG10925.1| unnamed protein produc (1421) 488 122.7 1.9e-25 gi|156223485|gb|EDO44319.1| predicted protein [Nem (2450) 440 111.6 7.1e-22 gi|115913832|ref|XP_796637.2| PREDICTED: hypotheti (2123) 438 111.1 8.8e-22 gi|190583072|gb|EDV23143.1| hypothetical protein T (2077) 413 105.2 5e-20 gi|210102883|gb|EEA50926.1| hypothetical protein B (2450) 394 100.8 1.2e-18 gi|210083388|gb|EEA31994.1| hypothetical protein B (2605) 394 100.8 1.3e-18 gi|221117078|ref|XP_002156309.1| PREDICTED: simila (2203) 248 66.6 2.2e-08 gi|148706202|gb|EDL38149.1| ubiquitin specific pep (1929) 181 50.9 0.001 gi|120300980|ref|NP_683745.2| ubiquitin specific p (2556) 181 51.0 0.0013 gi|14041782|emb|CAC38831.1| putative ubiquitin-spe (2556) 181 51.0 0.0013 gi|26337349|dbj|BAC32360.1| unnamed protein produc ( 231) 161 45.7 0.0047 gi|3283919|gb|AAC25395.1| ubiquitin hydrolase [Hom ( 345) 161 45.8 0.0065 gi|28374296|gb|AAH46205.1| USP9X protein [Homo sap ( 473) 161 45.9 0.0083 >>gi|20987359|gb|AAH29660.1| USP24 protein [Homo sapiens (309 aa) initn: 969 init1: 969 opt: 969 Z-score: 1230.5 bits: 234.7 E(): 7.8e-60 Smith-Waterman score: 969; 99.301% identity (100.000% similar) in 143 aa overlap (1-143:167-309) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|209 ELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 140 150 160 170 180 190 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 200 210 220 230 240 250 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP :::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|209 YATALLNEKEQSGSSNGSESSPANENGDRHLQQGSESPMMIGELRSDLDDVDP 260 270 280 290 300 >>gi|7020329|dbj|BAA91084.1| unnamed protein product [Ho (309 aa) initn: 966 init1: 966 opt: 966 Z-score: 1226.8 bits: 234.0 E(): 1.3e-59 Smith-Waterman score: 966; 98.601% identity (100.000% similar) in 143 aa overlap (1-143:167-309) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|702 ELKNTFQLLHEILVIEDPIQAERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 140 150 160 170 180 190 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|702 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 200 210 220 230 240 250 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP ::::::::.::::::::::::::::::.::::::::::::::::::::::::: gi|702 YATALLNEREQSGSSNGSESSPANENGDRHLQQGSESPMMIGELRSDLDDVDP 260 270 280 290 300 >>gi|71051142|gb|AAH98851.1| Unknown (protein for IMAGE: (170 aa) initn: 963 init1: 963 opt: 963 Z-score: 1226.7 bits: 233.1 E(): 1.3e-59 Smith-Waterman score: 963; 99.301% identity (100.000% similar) in 143 aa overlap (1-143:28-170) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLAQKC ::::::::::::::::::::::::::::::::: gi|710 NTFQLLHEILVMEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLAQKC 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 PAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLAYAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|710 PAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLAYAT 70 80 90 100 110 120 100 110 120 130 140 mKIAA1 ALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP ::::::::::::::::::::::::::.::::::::::::::::::::::: gi|710 ALLNEKEQSGSSNGSESSPANENGERRLQQGSESPMMIGELRSDLDDVDP 130 140 150 160 170 >>gi|148698872|gb|EDL30819.1| mCG121553, isoform CRA_a [ (2511 aa) initn: 973 init1: 973 opt: 973 Z-score: 1222.5 bits: 236.2 E(): 2.2e-59 Smith-Waterman score: 973; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:2369-2511) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|148 ELKNTFQLLHEVLVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 2340 2350 2360 2370 2380 2390 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 2400 2410 2420 2430 2440 2450 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP 2460 2470 2480 2490 2500 2510 >>gi|212288549|sp|B1AY13.1|UBP24_MOUSE RecName: Full=Ubi (2617 aa) initn: 973 init1: 973 opt: 973 Z-score: 1222.2 bits: 236.2 E(): 2.3e-59 Smith-Waterman score: 973; 100.000% identity (100.000% similar) in 143 aa overlap (1-143:2475-2617) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|212 ELKNTFQLLHEVLVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 2450 2460 2470 2480 2490 2500 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|212 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 2510 2520 2530 2540 2550 2560 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|212 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP 2570 2580 2590 2600 2610 >>gi|109005102|ref|XP_001108457.1| PREDICTED: ubiquitin (2434 aa) initn: 969 init1: 969 opt: 969 Z-score: 1217.6 bits: 235.3 E(): 4.1e-59 Smith-Waterman score: 969; 99.301% identity (100.000% similar) in 143 aa overlap (1-143:2292-2434) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|109 ELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 2270 2280 2290 2300 2310 2320 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 2330 2340 2350 2360 2370 2380 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP :::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|109 YATALLNEKEQSGSSNGSESSPANENGDRHLQQGSESPMMIGELRSDLDDVDP 2390 2400 2410 2420 2430 >>gi|182888363|gb|AAI60138.1| Ubiquitin specific peptida (2460 aa) initn: 969 init1: 969 opt: 969 Z-score: 1217.6 bits: 235.3 E(): 4.1e-59 Smith-Waterman score: 969; 99.301% identity (100.000% similar) in 143 aa overlap (1-143:2318-2460) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|182 ELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 2290 2300 2310 2320 2330 2340 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 2350 2360 2370 2380 2390 2400 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP :::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|182 YATALLNEKEQSGSSNGSESSPANENGDRHLQQGSESPMMIGELRSDLDDVDP 2410 2420 2430 2440 2450 2460 >>gi|114556815|ref|XP_513431.2| PREDICTED: ubiquitin spe (2475 aa) initn: 969 init1: 969 opt: 969 Z-score: 1217.5 bits: 235.3 E(): 4.1e-59 Smith-Waterman score: 969; 99.301% identity (100.000% similar) in 143 aa overlap (1-143:2333-2475) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|114 ELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 2310 2320 2330 2340 2350 2360 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 2370 2380 2390 2400 2410 2420 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP :::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|114 YATALLNEKEQSGSSNGSESSPANENGDRHLQQGSESPMMIGELRSDLDDVDP 2430 2440 2450 2460 2470 >>gi|73956404|ref|XP_536697.2| PREDICTED: similar to Ubi (2527 aa) initn: 969 init1: 969 opt: 969 Z-score: 1217.4 bits: 235.3 E(): 4.2e-59 Smith-Waterman score: 969; 99.301% identity (100.000% similar) in 143 aa overlap (1-143:2385-2527) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|739 ELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 2360 2370 2380 2390 2400 2410 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QKCPAAKDYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 2420 2430 2440 2450 2460 2470 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP 2480 2490 2500 2510 2520 >>gi|212276491|sp|Q9UPU5.3|UBP24_HUMAN RecName: Full=Ubi (2620 aa) initn: 969 init1: 969 opt: 969 Z-score: 1217.2 bits: 235.3 E(): 4.3e-59 Smith-Waterman score: 969; 99.301% identity (100.000% similar) in 143 aa overlap (1-143:2478-2620) 10 20 30 mKIAA1 ENGLLALMHHSNHVDSSRCYQCVKFLVTLA :::::::::::::::::::::::::::::: gi|212 ELKNTFQLLHEILVIEDPIQVERVKFVFETENGLLALMHHSNHVDSSRCYQCVKFLVTLA 2450 2460 2470 2480 2490 2500 40 50 60 70 80 90 mKIAA1 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|212 QKCPAAKEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLA 2510 2520 2530 2540 2550 2560 100 110 120 130 140 mKIAA1 YATALLNEKEQSGSSNGSESSPANENGERHLQQGSESPMMIGELRSDLDDVDP :::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|212 YATALLNEKEQSGSSNGSESSPANENGDRHLQQGSESPMMIGELRSDLDDVDP 2570 2580 2590 2600 2610 2620 143 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 11:11:19 2009 done: Thu Mar 12 11:15:15 2009 Total Scan time: 571.250 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]