# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mie07030.fasta.nr -Q ../query/mKIAA1385.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1385, 141 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919999 sequences Expectation_n fit: rho(ln(x))= 4.7651+/-0.000183; mu= 8.2047+/- 0.010 mean_var=59.6520+/-11.788, 0's: 25 Z-trim: 31 B-trim: 1726 in 1/67 Lambda= 0.166059 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|194038433|ref|XP_001925530.1| PREDICTED: simila ( 199) 958 237.1 9.3e-61 gi|93279738|pdb|2FTS|A Chain A, Crystal Structure ( 419) 958 237.3 1.7e-60 gi|51247530|pdb|1T3E|A Chain A, Structural Basis O ( 421) 958 237.3 1.7e-60 gi|114653550|ref|XP_001135542.1| PREDICTED: gephyr ( 645) 958 237.5 2.4e-60 gi|114653556|ref|XP_510012.2| PREDICTED: similar t ( 645) 958 237.5 2.4e-60 gi|114653552|ref|XP_001135140.1| PREDICTED: gephyr ( 659) 958 237.5 2.4e-60 gi|189502802|gb|ACE06970.1| gephyrin isoform [Ratt ( 730) 958 237.5 2.6e-60 gi|16605466|emb|CAC81240.1| gephyrin [Homo sapiens ( 736) 958 237.5 2.6e-60 gi|149051519|gb|EDM03692.1| rCG61772, isoform CRA_ ( 736) 958 237.5 2.6e-60 gi|13431554|sp|Q9NQX3.1|GEPH_HUMAN RecName: Full=G ( 736) 958 237.5 2.6e-60 gi|88687222|emb|CAA47009.2| Gephyrin [Rattus norve ( 736) 958 237.5 2.6e-60 gi|73964217|ref|XP_547861.2| PREDICTED: similar to ( 742) 958 237.5 2.6e-60 gi|148670669|gb|EDL02616.1| gephyrin [Mus musculus ( 751) 958 237.5 2.7e-60 gi|114653546|ref|XP_001135627.1| PREDICTED: simila ( 755) 958 237.5 2.7e-60 gi|119601329|gb|EAW80923.1| gephyrin, isoform CRA_ ( 763) 958 237.5 2.7e-60 gi|114653542|ref|XP_001135362.1| PREDICTED: simila ( 768) 958 237.5 2.7e-60 gi|97536232|sp|Q03555.3|GEPH_RAT RecName: Full=Gep ( 768) 958 237.5 2.7e-60 gi|81875323|sp|Q8BUV3.1|GEPH_MOUSE RecName: Full=G ( 769) 958 237.5 2.7e-60 gi|10636475|emb|CAC10537.1| gephyrin [Homo sapiens ( 769) 958 237.5 2.7e-60 gi|126282621|ref|XP_001369844.1| PREDICTED: simila ( 769) 958 237.5 2.7e-60 gi|189054960|dbj|BAG37944.1| unnamed protein produ ( 769) 958 237.5 2.7e-60 gi|109083983|ref|XP_001105293.1| PREDICTED: gephyr ( 769) 958 237.5 2.7e-60 gi|194225110|ref|XP_001494492.2| PREDICTED: gephyr ( 770) 958 237.5 2.7e-60 gi|149051518|gb|EDM03691.1| rCG61772, isoform CRA_ ( 772) 958 237.5 2.7e-60 gi|117558669|gb|AAI27059.1| Gphn protein [Mus musc ( 772) 958 237.5 2.7e-60 gi|126282619|ref|XP_001369816.1| PREDICTED: simila ( 772) 958 237.5 2.7e-60 gi|221040076|dbj|BAH11801.1| unnamed protein produ ( 782) 958 237.5 2.8e-60 gi|114653540|ref|XP_001135451.1| PREDICTED: gephyr ( 785) 958 237.5 2.8e-60 gi|224051317|ref|XP_002199469.1| PREDICTED: gephyr ( 806) 958 237.5 2.8e-60 gi|49899139|gb|AAH76865.1| Gphn protein [Xenopus l ( 857) 956 237.1 4.1e-60 gi|49257222|gb|AAH71153.1| MGC83148 protein [Xenop ( 860) 956 237.1 4.1e-60 gi|221040818|dbj|BAH12110.1| unnamed protein produ ( 659) 950 235.6 9.1e-60 gi|189530908|ref|XP_001921795.1| PREDICTED: simila ( 797) 949 235.4 1.2e-59 gi|221041812|dbj|BAH12583.1| unnamed protein produ ( 705) 947 234.9 1.6e-59 gi|169145899|emb|CAQ14479.1| novel protein similar ( 448) 938 232.6 4.9e-59 gi|47220100|emb|CAF99013.1| unnamed protein produc ( 918) 939 233.0 7.3e-59 gi|82175210|sp|Q9PW38.1|GEPH_CHICK RecName: Full=G ( 736) 932 231.3 2e-58 gi|47224562|emb|CAG03546.1| unnamed protein produc ( 877) 671 168.8 1.5e-39 gi|210129515|gb|EEA77189.1| hypothetical protein B ( 430) 624 157.3 2.1e-36 gi|210129510|gb|EEA77184.1| hypothetical protein B ( 430) 624 157.3 2.1e-36 gi|198426706|ref|XP_002130264.1| PREDICTED: simila ( 735) 625 157.7 2.7e-36 gi|190580217|gb|EDV20302.1| hypothetical protein T ( 644) 584 147.9 2.2e-33 gi|156214688|gb|EDO35668.1| predicted protein [Nem ( 624) 578 146.4 5.9e-33 gi|215505361|gb|EEC14855.1| gephyrin, putative [Ix ( 453) 500 127.6 1.9e-27 gi|115681543|ref|XP_001201596.1| PREDICTED: hypoth ( 435) 484 123.8 2.6e-26 gi|110773623|ref|XP_624742.2| PREDICTED: similar t ( 478) 449 115.4 9.5e-24 gi|193082956|ref|NP_001122752.1| molybdenum cofact ( 629) 440 113.4 5.3e-23 gi|114653548|ref|XP_001135288.1| PREDICTED: gephyr ( 709) 434 112.0 1.6e-22 gi|221116681|ref|XP_002156859.1| PREDICTED: simila ( 795) 432 111.5 2.4e-22 gi|158590722|gb|EDP29337.1| Probable molybdopterin ( 436) 426 109.9 4e-22 >>gi|194038433|ref|XP_001925530.1| PREDICTED: similar to (199 aa) initn: 958 init1: 958 opt: 958 Z-score: 1247.1 bits: 237.1 E(): 9.3e-61 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:59-199) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|194 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|194 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 90 100 110 120 130 140 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 150 160 170 180 190 >>gi|93279738|pdb|2FTS|A Chain A, Crystal Structure Of T (419 aa) initn: 958 init1: 958 opt: 958 Z-score: 1242.5 bits: 237.3 E(): 1.7e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:279-419) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|932 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 250 260 270 280 290 300 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|932 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 310 320 330 340 350 360 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|932 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 370 380 390 400 410 >>gi|51247530|pdb|1T3E|A Chain A, Structural Basis Of Dy (421 aa) initn: 958 init1: 958 opt: 958 Z-score: 1242.5 bits: 237.3 E(): 1.7e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:281-421) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|512 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 260 270 280 290 300 310 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|512 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 320 330 340 350 360 370 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|512 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 380 390 400 410 420 >>gi|114653550|ref|XP_001135542.1| PREDICTED: gephyrin i (645 aa) initn: 958 init1: 958 opt: 958 Z-score: 1239.8 bits: 237.5 E(): 2.4e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:505-645) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|114 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 480 490 500 510 520 530 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|114 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 540 550 560 570 580 590 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 600 610 620 630 640 >>gi|114653556|ref|XP_510012.2| PREDICTED: similar to Ge (645 aa) initn: 958 init1: 958 opt: 958 Z-score: 1239.8 bits: 237.5 E(): 2.4e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:505-645) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|114 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 480 490 500 510 520 530 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|114 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 540 550 560 570 580 590 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 600 610 620 630 640 >>gi|114653552|ref|XP_001135140.1| PREDICTED: gephyrin i (659 aa) initn: 958 init1: 958 opt: 958 Z-score: 1239.7 bits: 237.5 E(): 2.4e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:519-659) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|114 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 490 500 510 520 530 540 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|114 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 550 560 570 580 590 600 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 610 620 630 640 650 >>gi|189502802|gb|ACE06970.1| gephyrin isoform [Rattus n (730 aa) initn: 958 init1: 958 opt: 958 Z-score: 1239.1 bits: 237.5 E(): 2.6e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:590-730) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|189 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 560 570 580 590 600 610 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|189 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 620 630 640 650 660 670 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 680 690 700 710 720 730 >>gi|16605466|emb|CAC81240.1| gephyrin [Homo sapiens] (736 aa) initn: 958 init1: 958 opt: 958 Z-score: 1239.0 bits: 237.5 E(): 2.6e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:596-736) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|166 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 570 580 590 600 610 620 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|166 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 630 640 650 660 670 680 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|166 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 690 700 710 720 730 >>gi|149051519|gb|EDM03692.1| rCG61772, isoform CRA_b [R (736 aa) initn: 958 init1: 958 opt: 958 Z-score: 1239.0 bits: 237.5 E(): 2.6e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:596-736) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|149 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 570 580 590 600 610 620 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|149 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 630 640 650 660 670 680 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 690 700 710 720 730 >>gi|13431554|sp|Q9NQX3.1|GEPH_HUMAN RecName: Full=Gephy (736 aa) initn: 958 init1: 958 opt: 958 Z-score: 1239.0 bits: 237.5 E(): 2.6e-60 Smith-Waterman score: 958; 99.291% identity (100.000% similar) in 141 aa overlap (1-141:596-736) 10 20 30 mKIAA1 FGRVFMKPGLPTTFATLDIDGVRKIIFALP :::::::::::::::::::::::::::::: gi|134 DVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALP 570 580 590 600 610 620 40 50 60 70 80 90 mKIAA1 GNPVSAVVTCNLFVVPALRKMHGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|134 GNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEP 630 640 650 660 670 680 100 110 120 130 140 mKIAA1 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 LPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 690 700 710 720 730 141 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 00:56:09 2009 done: Sat Mar 14 01:00:10 2009 Total Scan time: 581.190 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]