FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4161.ptfa, 140 aa
 vs ./tmplib.26680 library

1768877 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.1250+/-0.00719; mu= -10.4602+/- 0.478
 mean_var=309.0453+/-72.553, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0730

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0950  ( 345 res)   mbj01090                   ( 345)  219   35  0.0032


>>mKIAA0950  ( 345 res)   mbj01090                        (345 aa)
 initn: 240 init1: 176 opt: 219  Z-score: 150.2  bits: 34.9 E(): 0.0032
Smith-Waterman score: 233;  35.669% identity (40.580% ungapped) in 157 aa overlap (2-140:18-173)

                               10        20        30           40 
mKIAA4                 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPG---GYPAY
                        : ..::.      .. :  ..  ::  ::     :     :: 
mKIAA0 GGKKRRRQAAVTQAATPASGTPSSREDIMTQGKLSVANKAPGTEGQQHQANGEKKDAPAV
               10        20        30        40        50        60

                     50          60             70        80       
mKIAA4 PAYPQPGY-------GHPAG-YPQ-PVP-PVHP----MPMNYGHDYNEEERAGS-DSFRP
       :. : :.:       :  :: .:: :.  :.::    .  . .  :.    ::  . :  
mKIAA0 PSAP-PSYEEATSGEGLKAGTFPQGPTAVPLHPSWAYVDPSGSSGYEGGFPAGHHEHFTT
                70        80        90       100       110         

         90       100       110       120       130       140      
mKIAA4 GEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIFTFVEPVGKYVRNNVAVYYVS      
         :::.:::. ::.::: :. ::::.:.:..:.::: . :  ::. : . :..:      
mKIAA0 FSWDDQKVRRLFIRKVYTILLVQLLVTLAVVALFTFCDVVKDYVQANPGWYWASYAVFFA
     120       130       140       150       160       170         

mKIAA0 TYLTLACCSGPRRHFPWNLILLTIFTLSMAYLTGMLSSYYNTTSVLLCLVITALVCLSVT
     180       190       200       210       220       230         




140 residues in 1 query   sequences
1768877 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:03:45 2006 done: Mon Mar 27 11:03:45 2006
 Scan time:  0.350 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]