# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mid34022.fasta.nr -Q ../query/mKIAA4161.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4161, 140 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7903659 sequences Expectation_n fit: rho(ln(x))= 6.0949+/-0.000198; mu= 2.8802+/- 0.011 mean_var=118.2158+/-22.788, 0's: 23 Z-trim: 49 B-trim: 143 in 1/66 Lambda= 0.117960 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|26453457|dbj|BAC43762.1| RECS1 [Mus musculus] ( 309) 1008 181.3 8.8e-44 gi|38503325|sp|Q8BJZ3.1|TMBI1_MOUSE RecName: Full= ( 309) 1008 181.3 8.8e-44 gi|74217818|dbj|BAE41919.1| unnamed protein produc ( 309) 994 179.0 4.6e-43 gi|50925671|gb|AAH79087.1| Transmembrane BAX inhib ( 309) 959 173.0 2.9e-41 gi|148667900|gb|EDL00317.1| transmembrane BAX inhi ( 164) 886 160.3 1e-37 gi|13435792|gb|AAH04752.1| Tmbim1 protein [Mus mus ( 164) 875 158.4 3.6e-37 gi|109100968|ref|XP_001089718.1| PREDICTED: transm ( 311) 873 158.4 7.3e-37 gi|119591014|gb|EAW70608.1| transmembrane BAX inhi ( 184) 869 157.5 8e-37 gi|149016103|gb|EDL75349.1| transmembrane BAX inhi ( 171) 868 157.3 8.6e-37 gi|93117549|sp|Q969X1.2|TMBI1_HUMAN RecName: Full= ( 311) 869 157.7 1.2e-36 gi|55725673|emb|CAH89618.1| hypothetical protein [ ( 311) 867 157.3 1.5e-36 gi|10732614|gb|AAG22473.1|AF193045_1 unknown [Homo ( 311) 855 155.3 6.1e-36 gi|34189346|gb|AAH26693.1| TMBIM1 protein [Homo sa ( 343) 825 150.2 2.3e-34 gi|42564204|gb|AAS20596.1| responsive to centrifug ( 308) 790 144.2 1.3e-32 gi|194373963|dbj|BAG62294.1| unnamed protein produ ( 215) 678 125.0 5.5e-27 gi|149711090|ref|XP_001491439.1| PREDICTED: simila ( 316) 577 108.0 1.1e-21 gi|118093769|ref|XP_422067.2| PREDICTED: hypotheti ( 311) 529 99.8 3.1e-19 gi|120577490|gb|AAI30077.1| LOC100101281 protein [ ( 335) 458 87.8 1.4e-15 gi|114583336|ref|XP_001144519.1| PREDICTED: hypoth ( 255) 438 84.3 1.2e-14 gi|54311223|gb|AAH84788.1| LOC495327 protein [Xeno ( 335) 426 82.3 6.1e-14 gi|21754493|dbj|BAC04516.1| unnamed protein produc ( 303) 425 82.1 6.4e-14 gi|62201902|gb|AAH92551.1| MGC107973 protein [Xeno ( 347) 424 82.0 8e-14 gi|194389774|dbj|BAG60403.1| unnamed protein produ ( 249) 402 78.1 8.4e-13 gi|47228030|emb|CAF97659.1| unnamed protein produc ( 352) 391 76.4 3.9e-12 gi|74005723|ref|XP_853016.1| PREDICTED: similar to ( 289) 381 74.6 1.1e-11 gi|53734147|gb|AAH83414.1| Transmembrane BAX inhib ( 324) 349 69.2 5.3e-10 gi|122138710|sp|Q32L53.1|GRINA_BOVIN RecName: Full ( 366) 343 68.2 1.2e-09 gi|114622144|ref|XP_001154339.1| PREDICTED: simila ( 352) 326 65.3 8.4e-09 gi|209736794|gb|ACI69266.1| Transmembrane BAX inhi ( 305) 318 63.9 2e-08 gi|149757632|ref|XP_001496061.1| PREDICTED: simila ( 366) 317 63.8 2.5e-08 gi|109087972|ref|XP_001098240.1| PREDICTED: simila ( 371) 305 61.8 1e-07 gi|81881873|sp|Q9ESF4.1|GRINA_MOUSE RecName: Full= ( 345) 304 61.6 1.1e-07 gi|148697591|gb|EDL29538.1| glutamate receptor, io ( 378) 304 61.6 1.2e-07 gi|73974854|ref|XP_532348.2| PREDICTED: similar to ( 492) 305 61.9 1.3e-07 gi|194376622|dbj|BAG57457.1| unnamed protein produ ( 351) 302 61.2 1.4e-07 gi|60477740|gb|AAH41788.2| Glutamate receptor, ion ( 371) 302 61.3 1.5e-07 gi|74738689|sp|Q7Z429.1|GRINA_HUMAN RecName: Full= ( 371) 302 61.3 1.5e-07 gi|189530059|ref|XP_695305.3| PREDICTED: similar t ( 298) 300 60.8 1.6e-07 gi|157015510|gb|EDO63682.1| AGAP005529-PA [Anophel ( 320) 300 60.9 1.7e-07 gi|54035119|gb|AAH84105.1| LOC495017 protein [Xeno ( 342) 300 60.9 1.8e-07 gi|81885264|sp|Q6P6R0.1|GRINA_RAT RecName: Full=Gl ( 348) 300 60.9 1.8e-07 gi|156538475|ref|XP_001606658.1| PREDICTED: simila ( 312) 299 60.7 1.9e-07 gi|149066128|gb|EDM16001.1| glutamate receptor, io ( 373) 300 60.9 1.9e-07 gi|126337846|ref|XP_001365941.1| PREDICTED: hypoth ( 276) 289 58.9 5.6e-07 gi|114622146|ref|XP_520009.2| PREDICTED: similar t ( 371) 290 59.2 6.1e-07 gi|89269821|emb|CAJ81594.1| glutamate receptor, io ( 366) 285 58.4 1.1e-06 gi|27503256|gb|AAH42223.1| Grina-prov protein [Xen ( 378) 282 57.9 1.6e-06 gi|21627288|gb|AAM68612.1| N-methyl-D-aspartate re ( 313) 275 56.6 3.2e-06 gi|149494544|ref|XP_001517770.1| PREDICTED: hypoth ( 199) 270 55.6 4.1e-06 gi|16648240|gb|AAL25385.1| GH26622p [Drosophila me ( 316) 269 55.6 6.5e-06 >>gi|26453457|dbj|BAC43762.1| RECS1 [Mus musculus] g (309 aa) initn: 1008 init1: 1008 opt: 1008 Z-score: 942.3 bits: 181.3 E(): 8.8e-44 Smith-Waterman score: 1008; 100.000% identity (100.000% similar) in 138 aa overlap (3-140:1-138) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|264 MSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|264 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF 60 70 80 90 100 110 130 140 mKIAA4 TFVEPVGKYVRNNVAVYYVS :::::::::::::::::::: gi|264 TFVEPVGKYVRNNVAVYYVSYAVFLVTYLTLACCQGPRRRFPWNIILLTIFTLALGFVTG 120 130 140 150 160 170 >>gi|38503325|sp|Q8BJZ3.1|TMBI1_MOUSE RecName: Full=Tran (309 aa) initn: 1008 init1: 1008 opt: 1008 Z-score: 942.3 bits: 181.3 E(): 8.8e-44 Smith-Waterman score: 1008; 100.000% identity (100.000% similar) in 138 aa overlap (3-140:1-138) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|385 MSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|385 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF 60 70 80 90 100 110 130 140 mKIAA4 TFVEPVGKYVRNNVAVYYVS :::::::::::::::::::: gi|385 TFVEPVGKYVRNNVAVYYVSYAVFLVTYLTLACCQGPRRRFPWDIILLTIFTLALGFVTG 120 130 140 150 160 170 >>gi|74217818|dbj|BAE41919.1| unnamed protein product [M (309 aa) initn: 994 init1: 994 opt: 994 Z-score: 929.4 bits: 179.0 E(): 4.6e-43 Smith-Waterman score: 994; 99.275% identity (99.275% similar) in 138 aa overlap (3-140:1-138) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|742 MSNPSAPPPYEDHNPLYPGSPPPGGYGQLSVLPGGYPAYPAYPQPGYGHPAGYPQPVP 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF 60 70 80 90 100 110 130 140 mKIAA4 TFVEPVGKYVRNNVAVYYVS :::::::::::::::::::: gi|742 TFVEPVGKYVRNNVAVYYVSYAVFLVTYLTLACCQGPRRRFPWNIILLTIFTLALGFVTG 120 130 140 150 160 170 >>gi|50925671|gb|AAH79087.1| Transmembrane BAX inhibitor (309 aa) initn: 959 init1: 959 opt: 959 Z-score: 897.2 bits: 173.0 E(): 2.9e-41 Smith-Waterman score: 959; 92.754% identity (98.551% similar) in 138 aa overlap (3-140:1-138) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP ::::.:::::::::::::: ::::::::::::::::::::::::::::::::::::.: gi|509 MSNPTAPPPYEDHNPLYPGRPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPIP 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF :::::::::::::.:::::::::: :::::::::::.:::::::::::::::::::::.: gi|509 PVHPMPMNYGHDYSEEERAGSDSFGPGEWDDRKVRHTFIQKVYCIISVQLLITVAIIAVF 60 70 80 90 100 110 130 140 mKIAA4 TFVEPVGKYVRNNVAVYYVS ::::::..:::.:::::::: gi|509 TFVEPVSEYVRSNVAVYYVSYAVFIVTYLILVCCQGPRRRFPWNIILLTIFTLALGFMTG 120 130 140 150 160 170 >>gi|148667900|gb|EDL00317.1| transmembrane BAX inhibito (164 aa) initn: 935 init1: 886 opt: 886 Z-score: 833.6 bits: 160.3 E(): 1e-37 Smith-Waterman score: 886; 99.167% identity (100.000% similar) in 120 aa overlap (3-122:1-120) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF 60 70 80 90 100 110 130 140 mKIAA4 TFVEPVGKYVRNNVAVYYVS :. gi|148 TWSMQLWGPSVSPCSWLMTHSWSWGTGSTPSARRTTSQAPYRSTQI 120 130 140 150 160 >>gi|13435792|gb|AAH04752.1| Tmbim1 protein [Mus musculu (164 aa) initn: 924 init1: 875 opt: 875 Z-score: 823.5 bits: 158.4 E(): 3.6e-37 Smith-Waterman score: 875; 98.333% identity (99.167% similar) in 120 aa overlap (3-122:1-120) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 MSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIS 60 70 80 90 100 110 130 140 mKIAA4 TFVEPVGKYVRNNVAVYYVS :. gi|134 TWSMQLWGPSVSPCSWLMTHSWSWGTGSTPSARRTTSQAPYRSTQI 120 130 140 150 160 >>gi|109100968|ref|XP_001089718.1| PREDICTED: transmembr (311 aa) initn: 518 init1: 518 opt: 873 Z-score: 818.1 bits: 158.4 E(): 7.3e-37 Smith-Waterman score: 873; 86.429% identity (92.857% similar) in 140 aa overlap (3-140:1-140) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP ::::::::::::.:::::: ::::::::::::::::::::.:::::::::::::::.: gi|109 MSNPSAPPPYEDRNPLYPGPPPPGGYGQPSVLPGGYPAYPGYPQPGYGHPAGYPQPMP 10 20 30 40 50 70 80 90 100 110 mKIAA4 PVHPMPMNYG--HDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIA :.:::::::: : :. :::: :::: :::::::::::.::.::: :::::::::::::: gi|109 PIHPMPMNYGPGHGYDGEERAVSDSFGPGEWDDRKVRHTFIRKVYSIISVQLLITVAIIA 60 70 80 90 100 110 120 130 140 mKIAA4 IFTFVEPVGKYVRNNVAVYYVS ::::::::. .:: :::::::: gi|109 IFTFVEPVSAFVRRNVAVYYVSYAVFVVTYLILACCQGPRRRFPWNIILLTLFTFAMGFM 120 130 140 150 160 170 >>gi|119591014|gb|EAW70608.1| transmembrane BAX inhibito (184 aa) initn: 514 init1: 514 opt: 869 Z-score: 817.4 bits: 157.5 E(): 8e-37 Smith-Waterman score: 869; 86.429% identity (92.857% similar) in 140 aa overlap (3-140:1-140) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP ::::::::::::.:::::: ::::::::::::::::::::.:::::::::::::::.: gi|119 MSNPSAPPPYEDRNPLYPGPPPPGGYGQPSVLPGGYPAYPGYPQPGYGHPAGYPQPMP 10 20 30 40 50 70 80 90 100 110 mKIAA4 PVHPMPMNYG--HDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIA :.:::::::: : :. :::: :::: :::::::::::.::.::: :::::::::::::: gi|119 PTHPMPMNYGPGHGYDGEERAVSDSFGPGEWDDRKVRHTFIRKVYSIISVQLLITVAIIA 60 70 80 90 100 110 120 130 140 mKIAA4 IFTFVEPVGKYVRNNVAVYYVS ::::::::. .:: :::::::: gi|119 IFTFVEPVSAFVRRNVAVYYVSYAVFVVTYLILACCQGPRRRFPWNIILLTLFVSLEGWQ 120 130 140 150 160 170 >>gi|149016103|gb|EDL75349.1| transmembrane BAX inhibito (171 aa) initn: 868 init1: 868 opt: 868 Z-score: 816.9 bits: 157.3 E(): 8.6e-37 Smith-Waterman score: 868; 94.215% identity (98.347% similar) in 121 aa overlap (3-123:1-121) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP ::::.:::::::::::::: ::::::::::::::::::::::::::::::::::::.: gi|149 MSNPTAPPPYEDHNPLYPGRPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPIP 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 PVHPMPMNYGHDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIF :::::::::::::.:::::::::: :::::::::::.:::::::::::::::::::::.: gi|149 PVHPMPMNYGHDYSEEERAGSDSFGPGEWDDRKVRHTFIQKVYCIISVQLLITVAIIAVF 60 70 80 90 100 110 130 140 mKIAA4 TFVEPVGKYVRNNVAVYYVS ::: gi|149 TFVFTGSTWSTQVWGPSVSPCSWLMTRSWSWGTGSIPSAQRTTSQAPCRSTQI 120 130 140 150 160 170 >>gi|93117549|sp|Q969X1.2|TMBI1_HUMAN RecName: Full=Tran (311 aa) initn: 514 init1: 514 opt: 869 Z-score: 814.4 bits: 157.7 E(): 1.2e-36 Smith-Waterman score: 869; 86.429% identity (92.857% similar) in 140 aa overlap (3-140:1-140) 10 20 30 40 50 60 mKIAA4 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVP ::::::::::::.:::::: ::::::::::::::::::::.:::::::::::::::.: gi|931 MSNPSAPPPYEDRNPLYPGPPPPGGYGQPSVLPGGYPAYPGYPQPGYGHPAGYPQPMP 10 20 30 40 50 70 80 90 100 110 mKIAA4 PVHPMPMNYG--HDYNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIA :.:::::::: : :. :::: :::: :::::::::::.::.::: :::::::::::::: gi|931 PTHPMPMNYGPGHGYDGEERAVSDSFGPGEWDDRKVRHTFIRKVYSIISVQLLITVAIIA 60 70 80 90 100 110 120 130 140 mKIAA4 IFTFVEPVGKYVRNNVAVYYVS ::::::::. .:: :::::::: gi|931 IFTFVEPVSAFVRRNVAVYYVSYAVFVVTYLILACCQGPRRRFPWNIILLTLFTFAMGFM 120 130 140 150 160 170 140 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 20:54:22 2009 done: Tue Mar 17 20:58:17 2009 Total Scan time: 571.670 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]