# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mid29072.fasta.nr -Q ../query/mKIAA1745.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1745, 871 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919825 sequences Expectation_n fit: rho(ln(x))= 4.9987+/-0.000185; mu= 14.9108+/- 0.010 mean_var=72.0810+/-13.996, 0's: 26 Z-trim: 37 B-trim: 254 in 1/65 Lambda= 0.151065 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|76363527|sp|Q62179.2|SEM4B_MOUSE RecName: Full= ( 823) 5584 1226.7 0 gi|67866979|gb|AAY82464.1| semaphorin 4B [Mus musc ( 823) 5558 1221.0 0 gi|26326325|dbj|BAC26906.1| unnamed protein produc ( 823) 5476 1203.2 0 gi|109462212|ref|XP_001065984.1| PREDICTED: simila ( 967) 5337 1172.9 0 gi|854328|emb|CAA59984.1| semaphorin C [Mus muscul ( 782) 5293 1163.3 0 gi|149057289|gb|EDM08612.1| rCG24677, isoform CRA_ ( 821) 5263 1156.7 0 gi|109082395|ref|XP_001096618.1| PREDICTED: semaph (1203) 4822 1060.8 0 gi|158261005|dbj|BAF82680.1| unnamed protein produ ( 837) 4756 1046.3 0 gi|29840873|sp|Q9NPR2.3|SEM4B_HUMAN RecName: Full= ( 832) 4753 1045.6 0 gi|37181909|gb|AAQ88758.1| semaphorin C [Homo sapi ( 837) 4753 1045.6 0 gi|168278955|dbj|BAG11357.1| semaphorin-4B precurs ( 837) 4753 1045.6 0 gi|73951504|ref|XP_545859.2| PREDICTED: similar to ( 916) 4717 1037.8 0 gi|149690954|ref|XP_001498929.1| PREDICTED: simila ( 795) 4636 1020.1 0 gi|68533677|gb|AAH98793.1| Sema4b protein [Rattus ( 717) 4523 995.4 0 gi|119622489|gb|EAX02084.1| sema domain, immunoglo ( 681) 4055 893.4 0 gi|31874526|emb|CAD97806.1| hypothetical protein [ ( 681) 4033 888.6 0 gi|9368526|emb|CAB98205.1| SEMA4B, Semaphorin 4B [ ( 673) 4023 886.4 0 gi|109458963|ref|XP_001065817.1| PREDICTED: simila ( 717) 3618 798.2 0 gi|48257069|gb|AAH10701.2| SEMA4B protein [Homo sa ( 530) 3117 688.9 1.5e-195 gi|66267434|gb|AAH94849.1| SEMA4B protein [Homo sa ( 521) 3053 674.9 2.4e-191 gi|50415062|gb|AAH77964.1| Sema4b-prov protein [Xe ( 835) 2742 607.3 8.7e-171 gi|17389195|gb|AAH17658.1| SEMA4B protein [Homo sa ( 458) 2656 588.4 2.4e-165 gi|148726368|emb|CAN88514.1| novel protein similar ( 830) 2577 571.4 5.8e-160 gi|189521460|ref|XP_689642.3| PREDICTED: similar t ( 812) 2455 544.8 5.7e-152 gi|47217872|emb|CAG02365.1| unnamed protein produc ( 687) 2339 519.4 2.1e-144 gi|47224184|emb|CAG13104.1| unnamed protein produc ( 683) 2236 497.0 1.2e-137 gi|10438887|dbj|BAB15372.1| unnamed protein produc ( 380) 1991 443.4 8.9e-122 gi|50415520|gb|AAH78116.1| Unknown (protein for MG ( 834) 1687 377.4 1.4e-101 gi|126303453|ref|XP_001379915.1| PREDICTED: simila ( 832) 1657 370.9 1.3e-99 gi|8134699|sp|Q64151.1|SEM4C_MOUSE RecName: Full=S ( 834) 1644 368.0 9.4e-99 gi|148682548|gb|EDL14495.1| mCG17761, isoform CRA_ ( 914) 1644 368.1 1e-98 gi|194671303|ref|XP_604387.4| PREDICTED: similar t ( 833) 1638 366.7 2.3e-98 gi|149046375|gb|EDL99268.1| sema domain, immunoglo ( 834) 1631 365.2 6.7e-98 gi|73970098|ref|XP_538464.2| PREDICTED: similar to ( 849) 1628 364.5 1.1e-97 gi|37182802|gb|AAQ89201.1| SEMA4C [Homo sapiens] ( 833) 1603 359.1 4.6e-96 gi|47606208|sp|Q9C0C4.2|SEM4C_HUMAN RecName: Full= ( 833) 1603 359.1 4.6e-96 gi|109103896|ref|XP_001100467.1| PREDICTED: semaph ( 833) 1599 358.2 8.4e-96 gi|119591731|gb|EAW71325.1| sema domain, immunoglo ( 886) 1591 356.5 3e-95 gi|134054524|emb|CAM73256.1| unnamed protein produ ( 863) 1581 354.3 1.3e-94 gi|122891339|emb|CAM14131.1| novel protein similar ( 811) 1553 348.2 8.6e-93 gi|47219866|emb|CAF97136.1| unnamed protein produc ( 835) 1541 345.6 5.4e-92 gi|74210023|dbj|BAE21302.1| unnamed protein produc ( 814) 1503 337.3 1.6e-89 gi|49248072|gb|AAH49780.2| Sema domain, immunoglob ( 861) 1503 337.3 1.7e-89 gi|8134689|sp|O09126.1|SEM4D_MOUSE RecName: Full=S ( 861) 1499 336.4 3.1e-89 gi|26353700|dbj|BAC40480.1| unnamed protein produc ( 799) 1497 336.0 4e-89 gi|114579013|ref|XP_515634.2| PREDICTED: semaphori ( 858) 1496 335.8 4.9e-89 gi|118096037|ref|XP_413950.2| PREDICTED: similar t ( 461) 1489 334.0 8.9e-89 gi|194041392|ref|XP_001928494.1| PREDICTED: simila ( 865) 1489 334.3 1.4e-88 gi|194224945|ref|XP_001493931.2| PREDICTED: simila ( 937) 1487 333.8 2.1e-88 gi|37927181|pdb|1OLZ|A Chain A, The Ligand-Binding ( 663) 1483 332.9 2.9e-88 >>gi|76363527|sp|Q62179.2|SEM4B_MOUSE RecName: Full=Sema (823 aa) initn: 5584 init1: 5584 opt: 5584 Z-score: 6570.0 bits: 1226.7 E(): 0 Smith-Waterman score: 5584; 100.000% identity (100.000% similar) in 823 aa overlap (49-871:1-823) 20 30 40 50 60 70 mKIAA1 GRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRA :::::::::::::::::::::::::::::: gi|763 MGRASRSAVLRRALLLLLLLLLLRTTTTRA 10 20 30 80 90 100 110 120 130 mKIAA1 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA1 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA1 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA1 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA1 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA1 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS 340 350 360 370 380 390 440 450 460 470 480 490 mKIAA1 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV 400 410 420 430 440 450 500 510 520 530 540 550 mKIAA1 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV 460 470 480 490 500 510 560 570 580 590 600 610 mKIAA1 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY 520 530 540 550 560 570 620 630 640 650 660 670 mKIAA1 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL 580 590 600 610 620 630 680 690 700 710 720 730 mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG 640 650 660 670 680 690 740 750 760 770 780 790 mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV 700 710 720 730 740 750 800 810 820 830 840 850 mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|763 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP 760 770 780 790 800 810 860 870 mKIAA1 RVRLGSEIRDSVV ::::::::::::: gi|763 RVRLGSEIRDSVV 820 >>gi|67866979|gb|AAY82464.1| semaphorin 4B [Mus musculus (823 aa) initn: 5558 init1: 5558 opt: 5558 Z-score: 6539.4 bits: 1221.0 E(): 0 Smith-Waterman score: 5558; 99.514% identity (99.878% similar) in 823 aa overlap (49-871:1-823) 20 30 40 50 60 70 mKIAA1 GRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRA :::::::::::::::::::::::::::::: gi|678 MGRASRSAVLRRALLLLLLLLLLRTTTTRA 10 20 30 80 90 100 110 120 130 mKIAA1 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA1 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA1 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA1 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|678 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDRIYFFFSETGQEFEFFENTIVSRVA 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA1 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA1 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS 340 350 360 370 380 390 440 450 460 470 480 490 mKIAA1 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV 400 410 420 430 440 450 500 510 520 530 540 550 mKIAA1 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV 460 470 480 490 500 510 560 570 580 590 600 610 mKIAA1 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|678 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYKPDLASRPWTQDIEGASVKELCKNSSY 520 530 540 550 560 570 620 630 640 650 660 670 mKIAA1 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL 580 590 600 610 620 630 680 690 700 710 720 730 mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG 640 650 660 670 680 690 740 750 760 770 780 790 mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|678 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFLLYRHRDGMKLFLKQGECASVHPKTRPIV 700 710 720 730 740 750 800 810 820 830 840 850 mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|678 LPPETRPLNCVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP 760 770 780 790 800 810 860 870 mKIAA1 RVRLGSEIRDSVV ::::::::::::: gi|678 RVRLGSEIRDSVV 820 >>gi|26326325|dbj|BAC26906.1| unnamed protein product [M (823 aa) initn: 5476 init1: 5476 opt: 5476 Z-score: 6442.8 bits: 1203.2 E(): 0 Smith-Waterman score: 5476; 98.056% identity (99.028% similar) in 823 aa overlap (49-871:1-823) 20 30 40 50 60 70 mKIAA1 GRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRA ::::: : :: .:..::::::: :::::: gi|263 MGRASLSDVLLLSLMVLLLLLLLWTTTTRA 10 20 30 80 90 100 110 120 130 mKIAA1 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG :::::.::: .:::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LGPRINVPLCCQERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA1 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA1 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA1 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|263 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDRIYFFFSETGQEFEFFENTIVSRVA 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA1 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA1 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS 340 350 360 370 380 390 440 450 460 470 480 490 mKIAA1 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV 400 410 420 430 440 450 500 510 520 530 540 550 mKIAA1 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV 460 470 480 490 500 510 560 570 580 590 600 610 mKIAA1 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|263 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYKPDLASRPWTQDIEGASVKELCKNSSY 520 530 540 550 560 570 620 630 640 650 660 670 mKIAA1 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL 580 590 600 610 620 630 680 690 700 710 720 730 mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG 640 650 660 670 680 690 740 750 760 770 780 790 mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|263 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFLLYRHRDGMKLFLKQGECASVHPKTRPIV 700 710 720 730 740 750 800 810 820 830 840 850 mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LPPETRPLNCVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP 760 770 780 790 800 810 860 870 mKIAA1 RVRLGSEIRDSVV ::::::::::::: gi|263 RVRLGSEIRDSVV 820 >>gi|109462212|ref|XP_001065984.1| PREDICTED: similar to (967 aa) initn: 5226 init1: 5226 opt: 5337 Z-score: 6278.1 bits: 1172.9 E(): 0 Smith-Waterman score: 5337; 90.732% identity (95.195% similar) in 874 aa overlap (1-871:96-967) 10 20 mKIAA1 LLPGPEAEAEGRTPGRTAG--RGSSLRFHL ..:. . .. : :. .: ::..:. . gi|109 SAPSSLRRERGASTPQDWVEGSYSVATHVTIFPAAHPRSGGGGQGKDSGPNRGAGLQPET 70 80 90 100 110 120 30 40 50 60 70 80 mKIAA1 S-NLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPL . . . :::::::::::::::::: : :: ::::: :::::.::::::::::: gi|109 PLEQPEPEDAAPAAVRAPRAAMGRASRSADLLSALQLLLLL--LRTTTARALGPRISVPL 130 140 150 160 170 180 90 100 110 120 130 140 mKIAA1 GSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSA 190 200 210 220 230 240 150 160 170 180 190 200 mKIAA1 DADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIASFTLAQDE : :::::::::::::::::::::::::::::::::::::::::::::::. ::::::.:: gi|109 DPDRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYINTASFTLARDE 250 260 270 280 290 300 210 220 230 240 250 260 mKIAA1 AGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRPTKTESSL ::.:.::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|109 AGSVLLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSPRPTKTESSL 310 320 330 340 350 360 270 280 290 300 310 320 mKIAA1 NWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGG 370 380 390 400 410 420 330 340 350 360 370 380 mKIAA1 ERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGT 430 440 450 460 470 480 390 400 410 420 430 440 mKIAA1 TEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSS ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|109 TEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHPVPTPRPGACITNSARERKINSS 490 500 510 520 530 540 450 460 470 480 490 500 mKIAA1 LQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGR ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|109 LQLPDRVLNFLKDHFLMDGQVRSRLLLLQPQARYQRVAVHRVPGLHSTYDVLFLGTGDGR 550 560 570 580 590 600 510 520 530 540 550 560 mKIAA1 LHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTC :::::::.::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|109 LHKAVTLDSRVHIIEELQVFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTC 610 620 630 640 650 660 570 580 590 600 610 620 mKIAA1 GDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPGK :::::::::::::.::.:.: :::::::::::: ::::::..::::. :: ::: . ::: gi|109 GDCLLARDPYCAWNGSTCKLLSLYQPDLASRPWIQDIEGANTKELCNISSAKARSFKPGK 670 680 690 700 710 720 630 640 650 660 670 680 mKIAA1 PCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGLGV :::::::: :::::::::::::::::::.::::::::::::::::.:::::::::::::: gi|109 PCKQVQIQANTVNTLACPLLSNLATRLWLHNGAPVNASASCRVLPSGDLLLVGSQQGLGV 730 740 750 760 770 780 690 700 710 720 730 740 mKIAA1 FQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKS ::::::::::.:::::::::: :.:::::..: ::::::::::::::::::::::::::: gi|109 FQCWSIEEGFRQLVASYCPEVKEDGVMDQNDQSDGTPVIINTSRVSAPAGGRASWGADKS 790 800 810 820 830 840 750 760 770 780 790 800 mKIAA1 YWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLN :::::::::::: .:.::: ::::::.:::::::::::::::::::::: :::::::::: gi|109 YWNEFLVMCTLFGLAVVLLVLFFLYRNRDGMKLFLKQGECASVHPKTRPAVLPPETRPLN 850 860 870 880 890 900 810 820 830 840 850 860 mKIAA1 GVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIR 910 920 930 940 950 960 870 mKIAA1 DSVV :::: gi|109 DSVV >>gi|854328|emb|CAA59984.1| semaphorin C [Mus musculus] (782 aa) initn: 5293 init1: 5293 opt: 5293 Z-score: 6227.6 bits: 1163.3 E(): 0 Smith-Waterman score: 5293; 99.233% identity (99.361% similar) in 782 aa overlap (90-871:1-782) 60 70 80 90 100 110 mKIAA1 RALLLLLLLLLLRTTTTRALGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYV :::::::::::::::::::::::::::::: gi|854 EERLIRKFEAENISNYTALLLSQDGKTLYV 10 20 30 120 130 140 150 160 170 mKIAA1 GAREALFALNSNLSFLPGGEYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 GAREALFALNSNLSFLPGGEYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSS 40 50 60 70 80 90 180 190 200 210 220 230 mKIAA1 HLLTCGTAAFSPLCAYIHIASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYT :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|854 HLLTCGTAAFSPLCAYIHIASFTLAQDEAGNVILEDGKGHCPFDPNFKSTALVVDGELYT 100 110 120 130 140 150 240 250 260 270 280 290 mKIAA1 GTVSSFQGNDPAISRSQSSRPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFF :::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|854 GTVSSFQGNDPAISRSQSSRPTKTESSLNWLQDPAFVASATSPESLGSPIGDDDKIYFFF 160 170 180 190 200 210 300 310 320 330 340 350 mKIAA1 SETGQEFEFFENTIVSRVARVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 SETGQEFEFFENTIVSRVARVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQD 220 230 240 250 260 270 360 370 380 390 400 410 mKIAA1 VFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQW ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|854 VFTLNPNPQDWRKTLSIGVFTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQW 280 290 300 310 320 330 420 430 440 450 460 470 mKIAA1 YTETHQVPTPRPGACITNSARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 YTETHQVPTPRPGACITNSARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRA 340 350 360 370 380 390 480 490 500 510 520 530 mKIAA1 RYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 RYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLD 400 410 420 430 440 450 540 550 560 570 580 590 mKIAA1 SHGGLLYASSHSGVVQVPVANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 SHGGLLYASSHSGVVQVPVANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRP 460 470 480 490 500 510 600 610 620 630 640 650 mKIAA1 WTQDIEGASVKELCKNSSYKARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 WTQDIEGASVKELCKNSSYKARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNG 520 530 540 550 560 570 660 670 680 690 700 710 mKIAA1 APVNASASCRVLPTGDLLLVGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 APVNASASCRVLPTGDLLLVGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQ 580 590 600 610 620 630 720 730 740 750 760 770 mKIAA1 RDGTPVIINTSRVSAPAGGRASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMK :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|854 RDGTPVIINTSRVSAPAGGRDSWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMK 640 650 660 670 680 690 780 790 800 810 820 830 mKIAA1 LFLKQGECASVHPKTRPIVLPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 LFLKQGECASVHPKTRPIVLPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEK 700 710 720 730 740 750 840 850 860 870 mKIAA1 RPLSIQDSFVEVSPVCPRPRVRLGSEIRDSVV :::::::::::::::::::::::::::::::: gi|854 RPLSIQDSFVEVSPVCPRPRVRLGSEIRDSVV 760 770 780 >>gi|149057289|gb|EDM08612.1| rCG24677, isoform CRA_a [R (821 aa) initn: 5226 init1: 5226 opt: 5263 Z-score: 6191.9 bits: 1156.7 E(): 0 Smith-Waterman score: 5263; 94.289% identity (97.205% similar) in 823 aa overlap (49-871:1-821) 20 30 40 50 60 70 mKIAA1 GRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRA :::::::: : :: :::::: ::::.:: gi|149 MGRASRSADLLSALQLLLLLL--RTTTARA 10 20 80 90 100 110 120 130 mKIAA1 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LGPRISVPLDSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG 30 40 50 60 70 80 140 150 160 170 180 190 mKIAA1 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI :::::::::: :::::::::::::::::::::::::::::::::::::::::::::::. gi|149 EYQELLWSADPDRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYINT 90 100 110 120 130 140 200 210 220 230 240 250 mKIAA1 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS ::::::.::::.:.::::::::::::::::::::::::::::::::::::::::::::: gi|149 ASFTLARDEAGSVLLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSP 150 160 170 180 190 200 260 270 280 290 300 310 mKIAA1 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA 210 220 230 240 250 260 320 330 340 350 360 370 mKIAA1 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV 270 280 290 300 310 320 380 390 400 410 420 430 mKIAA1 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|149 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHPVPTPRPGACITNS 330 340 350 360 370 380 440 450 460 470 480 490 mKIAA1 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|149 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPQARYQRVAVHRVPGLHSTYDV 390 400 410 420 430 440 500 510 520 530 540 550 mKIAA1 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV ::::::::::::::::.::::::::::.:::::::::::::::::::::::::::::::: gi|149 LFLGTGDGRLHKAVTLDSRVHIIEELQVFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV 450 460 470 480 490 500 560 570 580 590 600 610 mKIAA1 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY ::::::::::::::::::::::.::.:.: :::::::::::: ::::::..::::. :: gi|149 ANCSLYPTCGDCLLARDPYCAWNGSTCKLLSLYQPDLASRPWIQDIEGANTKELCNISSA 510 520 530 540 550 560 620 630 640 650 660 670 mKIAA1 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL ::: . ::::::::::: :::::::::::::::::::.::::::::::::::::.::::: gi|149 KARSFKPGKPCKQVQIQANTVNTLACPLLSNLATRLWLHNGAPVNASASCRVLPSGDLLL 570 580 590 600 610 620 680 690 700 710 720 730 mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG :::::::::::::::::::.:::::::::: :.:::::..: :::::::::::::::::: gi|149 VGSQQGLGVFQCWSIEEGFRQLVASYCPEVKEDGVMDQNDQSDGTPVIINTSRVSAPAGG 630 640 650 660 670 680 740 750 760 770 780 790 mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV ::::::::::::::::::::: .:.::: ::::::.:::::::::::::::::::::: : gi|149 RASWGADKSYWNEFLVMCTLFGLAVVLLVLFFLYRNRDGMKLFLKQGECASVHPKTRPAV 690 700 710 720 730 740 800 810 820 830 840 850 mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP 750 760 770 780 790 800 860 870 mKIAA1 RVRLGSEIRDSVV ::::::::::::: gi|149 RVRLGSEIRDSVV 810 820 >>gi|109082395|ref|XP_001096618.1| PREDICTED: semaphorin (1203 aa) initn: 4494 init1: 3349 opt: 4822 Z-score: 5670.3 bits: 1060.8 E(): 0 Smith-Waterman score: 4824; 81.314% identity (91.166% similar) in 883 aa overlap (7-871:326-1203) 10 20 30 mKIAA1 LLPGPEAEAEGRTPGRTAG--RGSSLRFHLSNLSRR ...:: .: .: ::. .:: : gi|109 GLAWQGGRVSGHCGKSGPAGGDDRALAVTHSRSEGGSPRGDSGADRGA----ELSPGSPA 300 310 320 330 340 350 40 50 60 70 80 mKIAA1 RTPLPA-------AVRAPRAAMGRASRSAVL------RRALLLLLLLLLLRTTT-TRALG . : : :.:. ::::: : :. : ::::::::::. : ::. gi|109 EPPEPEPRDTVAPALRVLRAAMGPRSWLAAPWGALPPRPPLLLLLLLLLLQPPPPTWALS 360 370 380 390 400 410 90 100 110 120 130 140 mKIAA1 PRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEY ::::.::::::: . .:::::::::::::::.::.::::::::::::::::::::::::: gi|109 PRISLPLGSEERPFLRFEAENISNYTALLLSRDGRTLYVGAREALFALNSNLSFLPGGEY 420 430 440 450 460 470 150 160 170 180 190 200 mKIAA1 QELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIAS :::::::::..:::::::::::.:::::::::::::.::::.:::::::::.:.::.. . gi|109 QELLWSADAEKKQQCSFKGKDPQRDCQNYIKILLPLSSSHLFTCGTAAFSPMCTYINVEN 480 490 500 510 520 530 210 220 230 240 250 260 mKIAA1 FTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRP ::::.:: :::.::::::::::::::::::::::::::::::::::::::::::::: :: gi|109 FTLARDEKGNVLLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSLRP 540 550 560 570 580 590 270 280 290 300 310 320 mKIAA1 TKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARV ::::::::::::::::::::.:::::: :::::::::::::::::::::::::::.::. gi|109 TKTESSLNWLQDPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARI 600 610 620 630 640 650 330 340 350 360 370 380 mKIAA1 CKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFT :::::::::::::::::::::::::::::::::::::::::::.:.::::: :::::::: gi|109 CKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFT 660 670 680 690 700 710 390 400 410 420 430 440 mKIAA1 SQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSAR ::::::::::::.:::::.:::..:.::::.:::::::::: :: ::::::::::::::: gi|109 SQWHRGTTEGSAVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSAR 720 730 740 750 760 770 450 460 470 480 490 500 mKIAA1 ERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLF :::::::::::::::::::::::::::::::.:::::.::::::::::::::: .::::: gi|109 ERKINSSLQLPDRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHAYDVLF 780 790 800 810 820 830 510 520 530 540 550 560 mKIAA1 LGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVAN ::::::::::::... ::::::::::: .::::::::::.: :::::.:::::::::::: gi|109 LGTGDGRLHKAVSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPVAN 840 850 860 870 880 890 570 580 590 600 610 620 mKIAA1 CSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKA :::: .::::::::::::::.::.:. .:::::.::.::: ::::::..:.::. :: . gi|109 CSLYRSCGDCLLARDPYCAWSGSSCKHVSLYQPELATRPWIQDIEGANAKDLCSISSVVS 900 910 920 930 940 950 630 640 650 660 670 mKIAA1 RFLVPG--KPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL .:: :::::::.:::::::::::::::::::::.:::::.::::::.::::::::: gi|109 LSFVPTGEKPCKQVQFQPNTVNTLACPLLSNLATRLWLHNGAPINASASCHVLPTGDLLL 960 970 980 990 1000 1010 680 690 700 710 720 730 mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG ::.:: :: :::::.:::::::::::::::.:.:: :: .:: ..::::.:::::::::: gi|109 VGTQQ-LGEFQCWSLEEGFQQLVASYCPEVVEDGVADQTDQRGSVPVIISTSRVSAPAGG 1020 1030 1040 1050 1060 1070 740 750 760 770 780 790 mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV .::::::::::.::::::::::.:... ::.:::::..::.:::::::::::::: :.: gi|109 QASWGADKSYWKEFLVMCTLFVLAVLFPVLFLLYRHRNSMKVFLKQGECASVHPKTCPVV 1080 1090 1100 1110 1120 1130 800 810 820 830 840 850 mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP ::::::::::.:::::::::::::::::: :: ::::::::::::::::::::::::::: gi|109 LPPETRPLNGLGPPSTPLDHRGYQALSDSPPGARVFTESEKRPLSIQDSFVEVSPVCPRP 1140 1150 1160 1170 1180 1190 860 870 mKIAA1 RVRLGSEIRDSVV ::::::::::::: gi|109 RVRLGSEIRDSVV 1200 >>gi|158261005|dbj|BAF82680.1| unnamed protein product [ (837 aa) initn: 4431 init1: 3333 opt: 4756 Z-score: 5594.7 bits: 1046.3 E(): 0 Smith-Waterman score: 4756; 84.975% identity (94.828% similar) in 812 aa overlap (62-871:27-837) 40 50 60 70 80 90 mKIAA1 SRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPLGSEE ::::::::: : ::.::::.:::::: gi|158 MLRTAMGLRSWLAAPWGALPPRPPLLLLLLLLLLLQPPPPTWALSPRISLPLGSEE 10 20 30 40 50 100 110 120 130 140 150 mKIAA1 RLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSADADR : . .::::.::::::::::.::.:::::::::::::.::::::::::::::::.:::.. gi|158 RPFLRFEAEHISNYTALLLSRDGRTLYVGAREALFALSSNLSFLPGGEYQELLWGADAEK 60 70 80 90 100 110 160 170 180 190 200 210 mKIAA1 KQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIASFTLAQDEAGNV :::::::::::.:::::::::::::..:::.:::::::::.:.::.: .::::.:: ::: gi|158 KQQCSFKGKDPQRDCQNYIKILLPLSGSHLFTCGTAAFSPMCTYINIENFTLARDEKGNV 120 130 140 150 160 170 220 230 240 250 260 270 mKIAA1 ILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRPTKTESSLNWLQ .::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|158 LLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSLRPTKTESSLNWLQ 180 190 200 210 220 230 280 290 300 310 320 330 mKIAA1 DPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGGERVL :::::::::.:::::: :::::::::::::::::::::::::::.::.::::::::::: gi|158 DPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGGERVL 240 250 260 270 280 290 340 350 360 370 380 390 mKIAA1 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGS ::::::::::::::::::::::::::::::::.:.::::: ::::::::::::::::::: gi|158 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFTSQWHRGTTEGS 300 310 320 330 340 350 400 410 420 430 440 450 mKIAA1 AICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSSLQLP :.:::::.:::..:.::::.:::::::::: :: :::::::::::::::::::::::::: gi|158 AVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSARERKINSSLQLP 360 370 380 390 400 410 460 470 480 490 500 510 mKIAA1 DRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKA ::::::::::::::::::::.:::::.::::::::::::::: ::::::::::::::::: gi|158 DRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHTYDVLFLGTGDGRLHKA 420 430 440 450 460 470 520 530 540 550 560 570 mKIAA1 VTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTCGDCL :... ::::::::::: .::::::::::.: :::::.:::::::::.:::::: .::::: gi|158 VSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPMANCSLYRSCGDCL 480 490 500 510 520 530 580 590 600 610 620 mKIAA1 LARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPG--KPC :::::::::.::.:. .:::::.::.::: :::::::.:.::. :: . .:: ::: gi|158 LARDPYCAWSGSSCKHVSLYQPQLATRPWIQDIEGASAKDLCSASSVVSPSFVPTGEKPC 540 550 560 570 580 590 630 640 650 660 670 680 mKIAA1 KQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGLGVFQ .:::.:::::::::::::::::::::..:::::::::::.:::::::::::.:: :: :: gi|158 EQVQFQPNTVNTLACPLLSNLATRLWLRNGAPVNASASCHVLPTGDLLLVGTQQ-LGEFQ 600 610 620 630 640 650 690 700 710 720 730 740 mKIAA1 CWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKSYW :::.:::::::::::::::.:.:: :: .. ..::::.::::::::::.::::::.::: gi|158 CWSLEEGFQQLVASYCPEVVEDGVADQTDEGGSVPVIISTSRVSAPAGGKASWGADRSYW 660 670 680 690 700 710 750 760 770 780 790 800 mKIAA1 NEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLNGV .::::::::::.:..: ::.:::::..::.:::::::::::::: :.:::::::::::. gi|158 KEFLVMCTLFVLAVLLPVLFLLYRHRNSMKVFLKQGECASVHPKTCPVVLPPETRPLNGL 720 730 740 750 760 770 810 820 830 840 850 860 mKIAA1 GPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS :::::::::::::.:::: :: :::::::::::::::::::::::::::::::::::::: gi|158 GPPSTPLDHRGYQSLSDSPPGARVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS 780 790 800 810 820 830 870 mKIAA1 VV :: gi|158 VV >>gi|29840873|sp|Q9NPR2.3|SEM4B_HUMAN RecName: Full=Sema (832 aa) initn: 4428 init1: 3330 opt: 4753 Z-score: 5591.2 bits: 1045.6 E(): 0 Smith-Waterman score: 4753; 84.852% identity (94.828% similar) in 812 aa overlap (62-871:22-832) 40 50 60 70 80 90 mKIAA1 SRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPLGSEE ::::::::: : ::.::::.:::::: gi|298 MGLRSWLAAPWGALPPRPPLLLLLLLLLLLQPPPPTWALSPRISLPLGSEE 10 20 30 40 50 100 110 120 130 140 150 mKIAA1 RLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSADADR : . .::::.::::::::::.::.:::::::::::::.::::::::::::::::.:::.. gi|298 RPFLRFEAEHISNYTALLLSRDGRTLYVGAREALFALSSNLSFLPGGEYQELLWGADAEK 60 70 80 90 100 110 160 170 180 190 200 210 mKIAA1 KQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIASFTLAQDEAGNV :::::::::::.:::::::::::::..:::.:::::::::.:.::.. .::::.:: ::: gi|298 KQQCSFKGKDPQRDCQNYIKILLPLSGSHLFTCGTAAFSPMCTYINMENFTLARDEKGNV 120 130 140 150 160 170 220 230 240 250 260 270 mKIAA1 ILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRPTKTESSLNWLQ .::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|298 LLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSLRPTKTESSLNWLQ 180 190 200 210 220 230 280 290 300 310 320 330 mKIAA1 DPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGGERVL :::::::::.:::::: :::::::::::::::::::::::::::.::.::::::::::: gi|298 DPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGGERVL 240 250 260 270 280 290 340 350 360 370 380 390 mKIAA1 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGS ::::::::::::::::::::::::::::::::.:.::::: ::::::::::::::::::: gi|298 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFTSQWHRGTTEGS 300 310 320 330 340 350 400 410 420 430 440 450 mKIAA1 AICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSSLQLP :.:::::.:::..:.::::.:::::::::: :: :::::::::::::::::::::::::: gi|298 AVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSARERKINSSLQLP 360 370 380 390 400 410 460 470 480 490 500 510 mKIAA1 DRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKA ::::::::::::::::::::.:::::.::::::::::::::: ::::::::::::::::: gi|298 DRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHTYDVLFLGTGDGRLHKA 420 430 440 450 460 470 520 530 540 550 560 570 mKIAA1 VTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTCGDCL :... ::::::::::: .::::::::::.: :::::.:::::::::.:::::: .::::: gi|298 VSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPMANCSLYRSCGDCL 480 490 500 510 520 530 580 590 600 610 620 mKIAA1 LARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPG--KPC :::::::::.::.:. .:::::.::.::: :::::::.:.::. :: . .:: ::: gi|298 LARDPYCAWSGSSCKHVSLYQPQLATRPWIQDIEGASAKDLCSASSVVSPSFVPTGEKPC 540 550 560 570 580 590 630 640 650 660 670 680 mKIAA1 KQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGLGVFQ .:::.:::::::::::::::::::::..:::::::::::.:::::::::::.:: :: :: gi|298 EQVQFQPNTVNTLACPLLSNLATRLWLRNGAPVNASASCHVLPTGDLLLVGTQQ-LGEFQ 600 610 620 630 640 650 690 700 710 720 730 740 mKIAA1 CWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKSYW :::.:::::::::::::::.:.:: :: .. ..::::.::::::::::.::::::.::: gi|298 CWSLEEGFQQLVASYCPEVVEDGVADQTDEGGSVPVIISTSRVSAPAGGKASWGADRSYW 660 670 680 690 700 710 750 760 770 780 790 800 mKIAA1 NEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLNGV .::::::::::.:..: ::.:::::..::.:::::::::::::: :.:::::::::::. gi|298 KEFLVMCTLFVLAVLLPVLFLLYRHRNSMKVFLKQGECASVHPKTCPVVLPPETRPLNGL 720 730 740 750 760 770 810 820 830 840 850 860 mKIAA1 GPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS :::::::::::::.:::: :: :::::::::::::::::::::::::::::::::::::: gi|298 GPPSTPLDHRGYQSLSDSPPGSRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS 780 790 800 810 820 830 870 mKIAA1 VV :: gi|298 VV >>gi|37181909|gb|AAQ88758.1| semaphorin C [Homo sapiens] (837 aa) initn: 4428 init1: 3330 opt: 4753 Z-score: 5591.1 bits: 1045.6 E(): 0 Smith-Waterman score: 4753; 84.852% identity (94.828% similar) in 812 aa overlap (62-871:27-837) 40 50 60 70 80 90 mKIAA1 SRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPLGSEE ::::::::: : ::.::::.:::::: gi|371 MLRTAMGLRSWLAAPWGALPPRPPLLLLLLLLLLLQPPPPTWALSPRISLPLGSEE 10 20 30 40 50 100 110 120 130 140 150 mKIAA1 RLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSADADR : . .::::.::::::::::.::.:::::::::::::.::::::::::::::::.:::.. gi|371 RPFLRFEAEHISNYTALLLSRDGRTLYVGAREALFALSSNLSFLPGGEYQELLWGADAEK 60 70 80 90 100 110 160 170 180 190 200 210 mKIAA1 KQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIASFTLAQDEAGNV :::::::::::.:::::::::::::..:::.:::::::::.:.::.. .::::.:: ::: gi|371 KQQCSFKGKDPQRDCQNYIKILLPLSGSHLFTCGTAAFSPMCTYINMENFTLARDEKGNV 120 130 140 150 160 170 220 230 240 250 260 270 mKIAA1 ILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRPTKTESSLNWLQ .::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|371 LLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSLRPTKTESSLNWLQ 180 190 200 210 220 230 280 290 300 310 320 330 mKIAA1 DPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGGERVL :::::::::.:::::: :::::::::::::::::::::::::::.::.::::::::::: gi|371 DPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGGERVL 240 250 260 270 280 290 340 350 360 370 380 390 mKIAA1 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGS ::::::::::::::::::::::::::::::::.:.::::: ::::::::::::::::::: gi|371 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFTSQWHRGTTEGS 300 310 320 330 340 350 400 410 420 430 440 450 mKIAA1 AICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSSLQLP :.:::::.:::..:.::::.:::::::::: :: :::::::::::::::::::::::::: gi|371 AVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSARERKINSSLQLP 360 370 380 390 400 410 460 470 480 490 500 510 mKIAA1 DRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKA ::::::::::::::::::::.:::::.::::::::::::::: ::::::::::::::::: gi|371 DRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHTYDVLFLGTGDGRLHKA 420 430 440 450 460 470 520 530 540 550 560 570 mKIAA1 VTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTCGDCL :... ::::::::::: .::::::::::.: :::::.:::::::::.:::::: .::::: gi|371 VSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPMANCSLYRSCGDCL 480 490 500 510 520 530 580 590 600 610 620 mKIAA1 LARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPG--KPC :::::::::.::.:. .:::::.::.::: :::::::.:.::. :: . .:: ::: gi|371 LARDPYCAWSGSSCKHVSLYQPQLATRPWIQDIEGASAKDLCSASSVVSPSFVPTGEKPC 540 550 560 570 580 590 630 640 650 660 670 680 mKIAA1 KQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGLGVFQ .:::.:::::::::::::::::::::..:::::::::::.:::::::::::.:: :: :: gi|371 EQVQFQPNTVNTLACPLLSNLATRLWLRNGAPVNASASCHVLPTGDLLLVGTQQ-LGEFQ 600 610 620 630 640 650 690 700 710 720 730 740 mKIAA1 CWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKSYW :::.:::::::::::::::.:.:: :: .. ..::::.::::::::::.::::::.::: gi|371 CWSLEEGFQQLVASYCPEVVEDGVADQTDEGGSVPVIISTSRVSAPAGGKASWGADRSYW 660 670 680 690 700 710 750 760 770 780 790 800 mKIAA1 NEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLNGV .::::::::::.:..: ::.:::::..::.:::::::::::::: :.:::::::::::. gi|371 KEFLVMCTLFVLAVLLPVLFLLYRHRNSMKVFLKQGECASVHPKTCPVVLPPETRPLNGL 720 730 740 750 760 770 810 820 830 840 850 860 mKIAA1 GPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS :::::::::::::.:::: :: :::::::::::::::::::::::::::::::::::::: gi|371 GPPSTPLDHRGYQSLSDSPPGARVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS 780 790 800 810 820 830 870 mKIAA1 VV :: gi|371 VV 871 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 16:47:36 2009 done: Sun Mar 15 16:56:12 2009 Total Scan time: 1128.410 Total Display time: 0.420 Function used was FASTA [version 34.26.5 April 26, 2007]