# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mid29072.fasta.nr -Q ../query/mKIAA1745.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA1745, 871 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7919825 sequences
Expectation_n fit: rho(ln(x))= 4.9987+/-0.000185; mu= 14.9108+/- 0.010
mean_var=72.0810+/-13.996, 0's: 26 Z-trim: 37 B-trim: 254 in 1/65
Lambda= 0.151065
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 38, opt: 26, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|76363527|sp|Q62179.2|SEM4B_MOUSE RecName: Full= ( 823) 5584 1226.7 0
gi|67866979|gb|AAY82464.1| semaphorin 4B [Mus musc ( 823) 5558 1221.0 0
gi|26326325|dbj|BAC26906.1| unnamed protein produc ( 823) 5476 1203.2 0
gi|109462212|ref|XP_001065984.1| PREDICTED: simila ( 967) 5337 1172.9 0
gi|854328|emb|CAA59984.1| semaphorin C [Mus muscul ( 782) 5293 1163.3 0
gi|149057289|gb|EDM08612.1| rCG24677, isoform CRA_ ( 821) 5263 1156.7 0
gi|109082395|ref|XP_001096618.1| PREDICTED: semaph (1203) 4822 1060.8 0
gi|158261005|dbj|BAF82680.1| unnamed protein produ ( 837) 4756 1046.3 0
gi|29840873|sp|Q9NPR2.3|SEM4B_HUMAN RecName: Full= ( 832) 4753 1045.6 0
gi|37181909|gb|AAQ88758.1| semaphorin C [Homo sapi ( 837) 4753 1045.6 0
gi|168278955|dbj|BAG11357.1| semaphorin-4B precurs ( 837) 4753 1045.6 0
gi|73951504|ref|XP_545859.2| PREDICTED: similar to ( 916) 4717 1037.8 0
gi|149690954|ref|XP_001498929.1| PREDICTED: simila ( 795) 4636 1020.1 0
gi|68533677|gb|AAH98793.1| Sema4b protein [Rattus ( 717) 4523 995.4 0
gi|119622489|gb|EAX02084.1| sema domain, immunoglo ( 681) 4055 893.4 0
gi|31874526|emb|CAD97806.1| hypothetical protein [ ( 681) 4033 888.6 0
gi|9368526|emb|CAB98205.1| SEMA4B, Semaphorin 4B [ ( 673) 4023 886.4 0
gi|109458963|ref|XP_001065817.1| PREDICTED: simila ( 717) 3618 798.2 0
gi|48257069|gb|AAH10701.2| SEMA4B protein [Homo sa ( 530) 3117 688.9 1.5e-195
gi|66267434|gb|AAH94849.1| SEMA4B protein [Homo sa ( 521) 3053 674.9 2.4e-191
gi|50415062|gb|AAH77964.1| Sema4b-prov protein [Xe ( 835) 2742 607.3 8.7e-171
gi|17389195|gb|AAH17658.1| SEMA4B protein [Homo sa ( 458) 2656 588.4 2.4e-165
gi|148726368|emb|CAN88514.1| novel protein similar ( 830) 2577 571.4 5.8e-160
gi|189521460|ref|XP_689642.3| PREDICTED: similar t ( 812) 2455 544.8 5.7e-152
gi|47217872|emb|CAG02365.1| unnamed protein produc ( 687) 2339 519.4 2.1e-144
gi|47224184|emb|CAG13104.1| unnamed protein produc ( 683) 2236 497.0 1.2e-137
gi|10438887|dbj|BAB15372.1| unnamed protein produc ( 380) 1991 443.4 8.9e-122
gi|50415520|gb|AAH78116.1| Unknown (protein for MG ( 834) 1687 377.4 1.4e-101
gi|126303453|ref|XP_001379915.1| PREDICTED: simila ( 832) 1657 370.9 1.3e-99
gi|8134699|sp|Q64151.1|SEM4C_MOUSE RecName: Full=S ( 834) 1644 368.0 9.4e-99
gi|148682548|gb|EDL14495.1| mCG17761, isoform CRA_ ( 914) 1644 368.1 1e-98
gi|194671303|ref|XP_604387.4| PREDICTED: similar t ( 833) 1638 366.7 2.3e-98
gi|149046375|gb|EDL99268.1| sema domain, immunoglo ( 834) 1631 365.2 6.7e-98
gi|73970098|ref|XP_538464.2| PREDICTED: similar to ( 849) 1628 364.5 1.1e-97
gi|37182802|gb|AAQ89201.1| SEMA4C [Homo sapiens] ( 833) 1603 359.1 4.6e-96
gi|47606208|sp|Q9C0C4.2|SEM4C_HUMAN RecName: Full= ( 833) 1603 359.1 4.6e-96
gi|109103896|ref|XP_001100467.1| PREDICTED: semaph ( 833) 1599 358.2 8.4e-96
gi|119591731|gb|EAW71325.1| sema domain, immunoglo ( 886) 1591 356.5 3e-95
gi|134054524|emb|CAM73256.1| unnamed protein produ ( 863) 1581 354.3 1.3e-94
gi|122891339|emb|CAM14131.1| novel protein similar ( 811) 1553 348.2 8.6e-93
gi|47219866|emb|CAF97136.1| unnamed protein produc ( 835) 1541 345.6 5.4e-92
gi|74210023|dbj|BAE21302.1| unnamed protein produc ( 814) 1503 337.3 1.6e-89
gi|49248072|gb|AAH49780.2| Sema domain, immunoglob ( 861) 1503 337.3 1.7e-89
gi|8134689|sp|O09126.1|SEM4D_MOUSE RecName: Full=S ( 861) 1499 336.4 3.1e-89
gi|26353700|dbj|BAC40480.1| unnamed protein produc ( 799) 1497 336.0 4e-89
gi|114579013|ref|XP_515634.2| PREDICTED: semaphori ( 858) 1496 335.8 4.9e-89
gi|118096037|ref|XP_413950.2| PREDICTED: similar t ( 461) 1489 334.0 8.9e-89
gi|194041392|ref|XP_001928494.1| PREDICTED: simila ( 865) 1489 334.3 1.4e-88
gi|194224945|ref|XP_001493931.2| PREDICTED: simila ( 937) 1487 333.8 2.1e-88
gi|37927181|pdb|1OLZ|A Chain A, The Ligand-Binding ( 663) 1483 332.9 2.9e-88
>>gi|76363527|sp|Q62179.2|SEM4B_MOUSE RecName: Full=Sema (823 aa)
initn: 5584 init1: 5584 opt: 5584 Z-score: 6570.0 bits: 1226.7 E(): 0
Smith-Waterman score: 5584; 100.000% identity (100.000% similar) in 823 aa overlap (49-871:1-823)
20 30 40 50 60 70
mKIAA1 GRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRA
::::::::::::::::::::::::::::::
gi|763 MGRASRSAVLRRALLLLLLLLLLRTTTTRA
10 20 30
80 90 100 110 120 130
mKIAA1 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG
40 50 60 70 80 90
140 150 160 170 180 190
mKIAA1 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI
100 110 120 130 140 150
200 210 220 230 240 250
mKIAA1 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS
160 170 180 190 200 210
260 270 280 290 300 310
mKIAA1 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA
220 230 240 250 260 270
320 330 340 350 360 370
mKIAA1 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV
280 290 300 310 320 330
380 390 400 410 420 430
mKIAA1 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS
340 350 360 370 380 390
440 450 460 470 480 490
mKIAA1 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV
400 410 420 430 440 450
500 510 520 530 540 550
mKIAA1 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV
460 470 480 490 500 510
560 570 580 590 600 610
mKIAA1 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY
520 530 540 550 560 570
620 630 640 650 660 670
mKIAA1 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
580 590 600 610 620 630
680 690 700 710 720 730
mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG
640 650 660 670 680 690
740 750 760 770 780 790
mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV
700 710 720 730 740 750
800 810 820 830 840 850
mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|763 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
760 770 780 790 800 810
860 870
mKIAA1 RVRLGSEIRDSVV
:::::::::::::
gi|763 RVRLGSEIRDSVV
820
>>gi|67866979|gb|AAY82464.1| semaphorin 4B [Mus musculus (823 aa)
initn: 5558 init1: 5558 opt: 5558 Z-score: 6539.4 bits: 1221.0 E(): 0
Smith-Waterman score: 5558; 99.514% identity (99.878% similar) in 823 aa overlap (49-871:1-823)
20 30 40 50 60 70
mKIAA1 GRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRA
::::::::::::::::::::::::::::::
gi|678 MGRASRSAVLRRALLLLLLLLLLRTTTTRA
10 20 30
80 90 100 110 120 130
mKIAA1 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG
40 50 60 70 80 90
140 150 160 170 180 190
mKIAA1 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI
100 110 120 130 140 150
200 210 220 230 240 250
mKIAA1 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS
160 170 180 190 200 210
260 270 280 290 300 310
mKIAA1 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
gi|678 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDRIYFFFSETGQEFEFFENTIVSRVA
220 230 240 250 260 270
320 330 340 350 360 370
mKIAA1 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV
280 290 300 310 320 330
380 390 400 410 420 430
mKIAA1 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS
340 350 360 370 380 390
440 450 460 470 480 490
mKIAA1 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV
400 410 420 430 440 450
500 510 520 530 540 550
mKIAA1 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV
460 470 480 490 500 510
560 570 580 590 600 610
mKIAA1 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
gi|678 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYKPDLASRPWTQDIEGASVKELCKNSSY
520 530 540 550 560 570
620 630 640 650 660 670
mKIAA1 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
580 590 600 610 620 630
680 690 700 710 720 730
mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG
640 650 660 670 680 690
740 750 760 770 780 790
mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
gi|678 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFLLYRHRDGMKLFLKQGECASVHPKTRPIV
700 710 720 730 740 750
800 810 820 830 840 850
mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|678 LPPETRPLNCVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
760 770 780 790 800 810
860 870
mKIAA1 RVRLGSEIRDSVV
:::::::::::::
gi|678 RVRLGSEIRDSVV
820
>>gi|26326325|dbj|BAC26906.1| unnamed protein product [M (823 aa)
initn: 5476 init1: 5476 opt: 5476 Z-score: 6442.8 bits: 1203.2 E(): 0
Smith-Waterman score: 5476; 98.056% identity (99.028% similar) in 823 aa overlap (49-871:1-823)
20 30 40 50 60 70
mKIAA1 GRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRA
::::: : :: .:..::::::: ::::::
gi|263 MGRASLSDVLLLSLMVLLLLLLLWTTTTRA
10 20 30
80 90 100 110 120 130
mKIAA1 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG
:::::.::: .::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 LGPRINVPLCCQERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG
40 50 60 70 80 90
140 150 160 170 180 190
mKIAA1 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI
100 110 120 130 140 150
200 210 220 230 240 250
mKIAA1 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS
160 170 180 190 200 210
260 270 280 290 300 310
mKIAA1 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
gi|263 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDRIYFFFSETGQEFEFFENTIVSRVA
220 230 240 250 260 270
320 330 340 350 360 370
mKIAA1 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV
280 290 300 310 320 330
380 390 400 410 420 430
mKIAA1 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS
340 350 360 370 380 390
440 450 460 470 480 490
mKIAA1 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV
400 410 420 430 440 450
500 510 520 530 540 550
mKIAA1 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV
460 470 480 490 500 510
560 570 580 590 600 610
mKIAA1 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
gi|263 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYKPDLASRPWTQDIEGASVKELCKNSSY
520 530 540 550 560 570
620 630 640 650 660 670
mKIAA1 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
580 590 600 610 620 630
680 690 700 710 720 730
mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG
640 650 660 670 680 690
740 750 760 770 780 790
mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
gi|263 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFLLYRHRDGMKLFLKQGECASVHPKTRPIV
700 710 720 730 740 750
800 810 820 830 840 850
mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 LPPETRPLNCVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
760 770 780 790 800 810
860 870
mKIAA1 RVRLGSEIRDSVV
:::::::::::::
gi|263 RVRLGSEIRDSVV
820
>>gi|109462212|ref|XP_001065984.1| PREDICTED: similar to (967 aa)
initn: 5226 init1: 5226 opt: 5337 Z-score: 6278.1 bits: 1172.9 E(): 0
Smith-Waterman score: 5337; 90.732% identity (95.195% similar) in 874 aa overlap (1-871:96-967)
10 20
mKIAA1 LLPGPEAEAEGRTPGRTAG--RGSSLRFHL
..:. . .. : :. .: ::..:. .
gi|109 SAPSSLRRERGASTPQDWVEGSYSVATHVTIFPAAHPRSGGGGQGKDSGPNRGAGLQPET
70 80 90 100 110 120
30 40 50 60 70 80
mKIAA1 S-NLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPL
. . . :::::::::::::::::: : :: ::::: :::::.:::::::::::
gi|109 PLEQPEPEDAAPAAVRAPRAAMGRASRSADLLSALQLLLLL--LRTTTARALGPRISVPL
130 140 150 160 170 180
90 100 110 120 130 140
mKIAA1 GSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 DSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSA
190 200 210 220 230 240
150 160 170 180 190 200
mKIAA1 DADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIASFTLAQDE
: :::::::::::::::::::::::::::::::::::::::::::::::. ::::::.::
gi|109 DPDRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYINTASFTLARDE
250 260 270 280 290 300
210 220 230 240 250 260
mKIAA1 AGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRPTKTESSL
::.:.::::::::::::::::::::::::::::::::::::::::::::: :::::::::
gi|109 AGSVLLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSPRPTKTESSL
310 320 330 340 350 360
270 280 290 300 310 320
mKIAA1 NWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 NWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGG
370 380 390 400 410 420
330 340 350 360 370 380
mKIAA1 ERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 ERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGT
430 440 450 460 470 480
390 400 410 420 430 440
mKIAA1 TEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSS
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
gi|109 TEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHPVPTPRPGACITNSARERKINSS
490 500 510 520 530 540
450 460 470 480 490 500
mKIAA1 LQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGR
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
gi|109 LQLPDRVLNFLKDHFLMDGQVRSRLLLLQPQARYQRVAVHRVPGLHSTYDVLFLGTGDGR
550 560 570 580 590 600
510 520 530 540 550 560
mKIAA1 LHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTC
:::::::.::::::::::.:::::::::::::::::::::::::::::::::::::::::
gi|109 LHKAVTLDSRVHIIEELQVFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTC
610 620 630 640 650 660
570 580 590 600 610 620
mKIAA1 GDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPGK
:::::::::::::.::.:.: :::::::::::: ::::::..::::. :: ::: . :::
gi|109 GDCLLARDPYCAWNGSTCKLLSLYQPDLASRPWIQDIEGANTKELCNISSAKARSFKPGK
670 680 690 700 710 720
630 640 650 660 670 680
mKIAA1 PCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGLGV
:::::::: :::::::::::::::::::.::::::::::::::::.::::::::::::::
gi|109 PCKQVQIQANTVNTLACPLLSNLATRLWLHNGAPVNASASCRVLPSGDLLLVGSQQGLGV
730 740 750 760 770 780
690 700 710 720 730 740
mKIAA1 FQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKS
::::::::::.:::::::::: :.:::::..: :::::::::::::::::::::::::::
gi|109 FQCWSIEEGFRQLVASYCPEVKEDGVMDQNDQSDGTPVIINTSRVSAPAGGRASWGADKS
790 800 810 820 830 840
750 760 770 780 790 800
mKIAA1 YWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLN
:::::::::::: .:.::: ::::::.:::::::::::::::::::::: ::::::::::
gi|109 YWNEFLVMCTLFGLAVVLLVLFFLYRNRDGMKLFLKQGECASVHPKTRPAVLPPETRPLN
850 860 870 880 890 900
810 820 830 840 850 860
mKIAA1 GVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 GVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIR
910 920 930 940 950 960
870
mKIAA1 DSVV
::::
gi|109 DSVV
>>gi|854328|emb|CAA59984.1| semaphorin C [Mus musculus] (782 aa)
initn: 5293 init1: 5293 opt: 5293 Z-score: 6227.6 bits: 1163.3 E(): 0
Smith-Waterman score: 5293; 99.233% identity (99.361% similar) in 782 aa overlap (90-871:1-782)
60 70 80 90 100 110
mKIAA1 RALLLLLLLLLLRTTTTRALGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYV
::::::::::::::::::::::::::::::
gi|854 EERLIRKFEAENISNYTALLLSQDGKTLYV
10 20 30
120 130 140 150 160 170
mKIAA1 GAREALFALNSNLSFLPGGEYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|854 GAREALFALNSNLSFLPGGEYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSS
40 50 60 70 80 90
180 190 200 210 220 230
mKIAA1 HLLTCGTAAFSPLCAYIHIASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYT
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
gi|854 HLLTCGTAAFSPLCAYIHIASFTLAQDEAGNVILEDGKGHCPFDPNFKSTALVVDGELYT
100 110 120 130 140 150
240 250 260 270 280 290
mKIAA1 GTVSSFQGNDPAISRSQSSRPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFF
:::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
gi|854 GTVSSFQGNDPAISRSQSSRPTKTESSLNWLQDPAFVASATSPESLGSPIGDDDKIYFFF
160 170 180 190 200 210
300 310 320 330 340 350
mKIAA1 SETGQEFEFFENTIVSRVARVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|854 SETGQEFEFFENTIVSRVARVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQD
220 230 240 250 260 270
360 370 380 390 400 410
mKIAA1 VFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQW
::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
gi|854 VFTLNPNPQDWRKTLSIGVFTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQW
280 290 300 310 320 330
420 430 440 450 460 470
mKIAA1 YTETHQVPTPRPGACITNSARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|854 YTETHQVPTPRPGACITNSARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRA
340 350 360 370 380 390
480 490 500 510 520 530
mKIAA1 RYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|854 RYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLD
400 410 420 430 440 450
540 550 560 570 580 590
mKIAA1 SHGGLLYASSHSGVVQVPVANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|854 SHGGLLYASSHSGVVQVPVANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRP
460 470 480 490 500 510
600 610 620 630 640 650
mKIAA1 WTQDIEGASVKELCKNSSYKARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|854 WTQDIEGASVKELCKNSSYKARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNG
520 530 540 550 560 570
660 670 680 690 700 710
mKIAA1 APVNASASCRVLPTGDLLLVGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|854 APVNASASCRVLPTGDLLLVGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQ
580 590 600 610 620 630
720 730 740 750 760 770
mKIAA1 RDGTPVIINTSRVSAPAGGRASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMK
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
gi|854 RDGTPVIINTSRVSAPAGGRDSWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMK
640 650 660 670 680 690
780 790 800 810 820 830
mKIAA1 LFLKQGECASVHPKTRPIVLPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|854 LFLKQGECASVHPKTRPIVLPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEK
700 710 720 730 740 750
840 850 860 870
mKIAA1 RPLSIQDSFVEVSPVCPRPRVRLGSEIRDSVV
::::::::::::::::::::::::::::::::
gi|854 RPLSIQDSFVEVSPVCPRPRVRLGSEIRDSVV
760 770 780
>>gi|149057289|gb|EDM08612.1| rCG24677, isoform CRA_a [R (821 aa)
initn: 5226 init1: 5226 opt: 5263 Z-score: 6191.9 bits: 1156.7 E(): 0
Smith-Waterman score: 5263; 94.289% identity (97.205% similar) in 823 aa overlap (49-871:1-821)
20 30 40 50 60 70
mKIAA1 GRGSSLRFHLSNLSRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRA
:::::::: : :: :::::: ::::.::
gi|149 MGRASRSADLLSALQLLLLLL--RTTTARA
10 20
80 90 100 110 120 130
mKIAA1 LGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 LGPRISVPLDSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGG
30 40 50 60 70 80
140 150 160 170 180 190
mKIAA1 EYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHI
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::.
gi|149 EYQELLWSADPDRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYINT
90 100 110 120 130 140
200 210 220 230 240 250
mKIAA1 ASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS
::::::.::::.:.:::::::::::::::::::::::::::::::::::::::::::::
gi|149 ASFTLARDEAGSVLLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSP
150 160 170 180 190 200
260 270 280 290 300 310
mKIAA1 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVA
210 220 230 240 250 260
320 330 340 350 360 370
mKIAA1 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 RVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGV
270 280 290 300 310 320
380 390 400 410 420 430
mKIAA1 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNS
:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
gi|149 FTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHPVPTPRPGACITNS
330 340 350 360 370 380
440 450 460 470 480 490
mKIAA1 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDV
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
gi|149 ARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPQARYQRVAVHRVPGLHSTYDV
390 400 410 420 430 440
500 510 520 530 540 550
mKIAA1 LFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV
::::::::::::::::.::::::::::.::::::::::::::::::::::::::::::::
gi|149 LFLGTGDGRLHKAVTLDSRVHIIEELQVFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPV
450 460 470 480 490 500
560 570 580 590 600 610
mKIAA1 ANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSY
::::::::::::::::::::::.::.:.: :::::::::::: ::::::..::::. ::
gi|149 ANCSLYPTCGDCLLARDPYCAWNGSTCKLLSLYQPDLASRPWIQDIEGANTKELCNISSA
510 520 530 540 550 560
620 630 640 650 660 670
mKIAA1 KARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
::: . ::::::::::: :::::::::::::::::::.::::::::::::::::.:::::
gi|149 KARSFKPGKPCKQVQIQANTVNTLACPLLSNLATRLWLHNGAPVNASASCRVLPSGDLLL
570 580 590 600 610 620
680 690 700 710 720 730
mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG
:::::::::::::::::::.:::::::::: :.:::::..: ::::::::::::::::::
gi|149 VGSQQGLGVFQCWSIEEGFRQLVASYCPEVKEDGVMDQNDQSDGTPVIINTSRVSAPAGG
630 640 650 660 670 680
740 750 760 770 780 790
mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV
::::::::::::::::::::: .:.::: ::::::.:::::::::::::::::::::: :
gi|149 RASWGADKSYWNEFLVMCTLFGLAVVLLVLFFLYRNRDGMKLFLKQGECASVHPKTRPAV
690 700 710 720 730 740
800 810 820 830 840 850
mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
750 760 770 780 790 800
860 870
mKIAA1 RVRLGSEIRDSVV
:::::::::::::
gi|149 RVRLGSEIRDSVV
810 820
>>gi|109082395|ref|XP_001096618.1| PREDICTED: semaphorin (1203 aa)
initn: 4494 init1: 3349 opt: 4822 Z-score: 5670.3 bits: 1060.8 E(): 0
Smith-Waterman score: 4824; 81.314% identity (91.166% similar) in 883 aa overlap (7-871:326-1203)
10 20 30
mKIAA1 LLPGPEAEAEGRTPGRTAG--RGSSLRFHLSNLSRR
...:: .: .: ::. .:: :
gi|109 GLAWQGGRVSGHCGKSGPAGGDDRALAVTHSRSEGGSPRGDSGADRGA----ELSPGSPA
300 310 320 330 340 350
40 50 60 70 80
mKIAA1 RTPLPA-------AVRAPRAAMGRASRSAVL------RRALLLLLLLLLLRTTT-TRALG
. : : :.:. ::::: : :. : ::::::::::. : ::.
gi|109 EPPEPEPRDTVAPALRVLRAAMGPRSWLAAPWGALPPRPPLLLLLLLLLLQPPPPTWALS
360 370 380 390 400 410
90 100 110 120 130 140
mKIAA1 PRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEY
::::.::::::: . .:::::::::::::::.::.:::::::::::::::::::::::::
gi|109 PRISLPLGSEERPFLRFEAENISNYTALLLSRDGRTLYVGAREALFALNSNLSFLPGGEY
420 430 440 450 460 470
150 160 170 180 190 200
mKIAA1 QELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIAS
:::::::::..:::::::::::.:::::::::::::.::::.:::::::::.:.::.. .
gi|109 QELLWSADAEKKQQCSFKGKDPQRDCQNYIKILLPLSSSHLFTCGTAAFSPMCTYINVEN
480 490 500 510 520 530
210 220 230 240 250 260
mKIAA1 FTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRP
::::.:: :::.::::::::::::::::::::::::::::::::::::::::::::: ::
gi|109 FTLARDEKGNVLLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSLRP
540 550 560 570 580 590
270 280 290 300 310 320
mKIAA1 TKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARV
::::::::::::::::::::.:::::: :::::::::::::::::::::::::::.::.
gi|109 TKTESSLNWLQDPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARI
600 610 620 630 640 650
330 340 350 360 370 380
mKIAA1 CKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFT
:::::::::::::::::::::::::::::::::::::::::::.:.::::: ::::::::
gi|109 CKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFT
660 670 680 690 700 710
390 400 410 420 430 440
mKIAA1 SQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSAR
::::::::::::.:::::.:::..:.::::.:::::::::: :: :::::::::::::::
gi|109 SQWHRGTTEGSAVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSAR
720 730 740 750 760 770
450 460 470 480 490 500
mKIAA1 ERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLF
:::::::::::::::::::::::::::::::.:::::.::::::::::::::: .:::::
gi|109 ERKINSSLQLPDRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHAYDVLF
780 790 800 810 820 830
510 520 530 540 550 560
mKIAA1 LGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVAN
::::::::::::... ::::::::::: .::::::::::.: :::::.::::::::::::
gi|109 LGTGDGRLHKAVSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPVAN
840 850 860 870 880 890
570 580 590 600 610 620
mKIAA1 CSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKA
:::: .::::::::::::::.::.:. .:::::.::.::: ::::::..:.::. :: .
gi|109 CSLYRSCGDCLLARDPYCAWSGSSCKHVSLYQPELATRPWIQDIEGANAKDLCSISSVVS
900 910 920 930 940 950
630 640 650 660 670
mKIAA1 RFLVPG--KPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
.:: :::::::.:::::::::::::::::::::.:::::.::::::.:::::::::
gi|109 LSFVPTGEKPCKQVQFQPNTVNTLACPLLSNLATRLWLHNGAPINASASCHVLPTGDLLL
960 970 980 990 1000 1010
680 690 700 710 720 730
mKIAA1 VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGG
::.:: :: :::::.:::::::::::::::.:.:: :: .:: ..::::.::::::::::
gi|109 VGTQQ-LGEFQCWSLEEGFQQLVASYCPEVVEDGVADQTDQRGSVPVIISTSRVSAPAGG
1020 1030 1040 1050 1060 1070
740 750 760 770 780 790
mKIAA1 RASWGADKSYWNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIV
.::::::::::.::::::::::.:... ::.:::::..::.:::::::::::::: :.:
gi|109 QASWGADKSYWKEFLVMCTLFVLAVLFPVLFLLYRHRNSMKVFLKQGECASVHPKTCPVV
1080 1090 1100 1110 1120 1130
800 810 820 830 840 850
mKIAA1 LPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRP
::::::::::.:::::::::::::::::: :: :::::::::::::::::::::::::::
gi|109 LPPETRPLNGLGPPSTPLDHRGYQALSDSPPGARVFTESEKRPLSIQDSFVEVSPVCPRP
1140 1150 1160 1170 1180 1190
860 870
mKIAA1 RVRLGSEIRDSVV
:::::::::::::
gi|109 RVRLGSEIRDSVV
1200
>>gi|158261005|dbj|BAF82680.1| unnamed protein product [ (837 aa)
initn: 4431 init1: 3333 opt: 4756 Z-score: 5594.7 bits: 1046.3 E(): 0
Smith-Waterman score: 4756; 84.975% identity (94.828% similar) in 812 aa overlap (62-871:27-837)
40 50 60 70 80 90
mKIAA1 SRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPLGSEE
::::::::: : ::.::::.::::::
gi|158 MLRTAMGLRSWLAAPWGALPPRPPLLLLLLLLLLLQPPPPTWALSPRISLPLGSEE
10 20 30 40 50
100 110 120 130 140 150
mKIAA1 RLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSADADR
: . .::::.::::::::::.::.:::::::::::::.::::::::::::::::.:::..
gi|158 RPFLRFEAEHISNYTALLLSRDGRTLYVGAREALFALSSNLSFLPGGEYQELLWGADAEK
60 70 80 90 100 110
160 170 180 190 200 210
mKIAA1 KQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIASFTLAQDEAGNV
:::::::::::.:::::::::::::..:::.:::::::::.:.::.: .::::.:: :::
gi|158 KQQCSFKGKDPQRDCQNYIKILLPLSGSHLFTCGTAAFSPMCTYINIENFTLARDEKGNV
120 130 140 150 160 170
220 230 240 250 260 270
mKIAA1 ILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRPTKTESSLNWLQ
.::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
gi|158 LLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSLRPTKTESSLNWLQ
180 190 200 210 220 230
280 290 300 310 320 330
mKIAA1 DPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGGERVL
:::::::::.:::::: :::::::::::::::::::::::::::.::.:::::::::::
gi|158 DPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGGERVL
240 250 260 270 280 290
340 350 360 370 380 390
mKIAA1 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGS
::::::::::::::::::::::::::::::::.:.::::: :::::::::::::::::::
gi|158 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFTSQWHRGTTEGS
300 310 320 330 340 350
400 410 420 430 440 450
mKIAA1 AICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSSLQLP
:.:::::.:::..:.::::.:::::::::: :: ::::::::::::::::::::::::::
gi|158 AVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSARERKINSSLQLP
360 370 380 390 400 410
460 470 480 490 500 510
mKIAA1 DRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKA
::::::::::::::::::::.:::::.::::::::::::::: :::::::::::::::::
gi|158 DRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHTYDVLFLGTGDGRLHKA
420 430 440 450 460 470
520 530 540 550 560 570
mKIAA1 VTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTCGDCL
:... ::::::::::: .::::::::::.: :::::.:::::::::.:::::: .:::::
gi|158 VSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPMANCSLYRSCGDCL
480 490 500 510 520 530
580 590 600 610 620
mKIAA1 LARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPG--KPC
:::::::::.::.:. .:::::.::.::: :::::::.:.::. :: . .:: :::
gi|158 LARDPYCAWSGSSCKHVSLYQPQLATRPWIQDIEGASAKDLCSASSVVSPSFVPTGEKPC
540 550 560 570 580 590
630 640 650 660 670 680
mKIAA1 KQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGLGVFQ
.:::.:::::::::::::::::::::..:::::::::::.:::::::::::.:: :: ::
gi|158 EQVQFQPNTVNTLACPLLSNLATRLWLRNGAPVNASASCHVLPTGDLLLVGTQQ-LGEFQ
600 610 620 630 640 650
690 700 710 720 730 740
mKIAA1 CWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKSYW
:::.:::::::::::::::.:.:: :: .. ..::::.::::::::::.::::::.:::
gi|158 CWSLEEGFQQLVASYCPEVVEDGVADQTDEGGSVPVIISTSRVSAPAGGKASWGADRSYW
660 670 680 690 700 710
750 760 770 780 790 800
mKIAA1 NEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLNGV
.::::::::::.:..: ::.:::::..::.:::::::::::::: :.:::::::::::.
gi|158 KEFLVMCTLFVLAVLLPVLFLLYRHRNSMKVFLKQGECASVHPKTCPVVLPPETRPLNGL
720 730 740 750 760 770
810 820 830 840 850 860
mKIAA1 GPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS
:::::::::::::.:::: :: ::::::::::::::::::::::::::::::::::::::
gi|158 GPPSTPLDHRGYQSLSDSPPGARVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS
780 790 800 810 820 830
870
mKIAA1 VV
::
gi|158 VV
>>gi|29840873|sp|Q9NPR2.3|SEM4B_HUMAN RecName: Full=Sema (832 aa)
initn: 4428 init1: 3330 opt: 4753 Z-score: 5591.2 bits: 1045.6 E(): 0
Smith-Waterman score: 4753; 84.852% identity (94.828% similar) in 812 aa overlap (62-871:22-832)
40 50 60 70 80 90
mKIAA1 SRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPLGSEE
::::::::: : ::.::::.::::::
gi|298 MGLRSWLAAPWGALPPRPPLLLLLLLLLLLQPPPPTWALSPRISLPLGSEE
10 20 30 40 50
100 110 120 130 140 150
mKIAA1 RLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSADADR
: . .::::.::::::::::.::.:::::::::::::.::::::::::::::::.:::..
gi|298 RPFLRFEAEHISNYTALLLSRDGRTLYVGAREALFALSSNLSFLPGGEYQELLWGADAEK
60 70 80 90 100 110
160 170 180 190 200 210
mKIAA1 KQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIASFTLAQDEAGNV
:::::::::::.:::::::::::::..:::.:::::::::.:.::.. .::::.:: :::
gi|298 KQQCSFKGKDPQRDCQNYIKILLPLSGSHLFTCGTAAFSPMCTYINMENFTLARDEKGNV
120 130 140 150 160 170
220 230 240 250 260 270
mKIAA1 ILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRPTKTESSLNWLQ
.::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
gi|298 LLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSLRPTKTESSLNWLQ
180 190 200 210 220 230
280 290 300 310 320 330
mKIAA1 DPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGGERVL
:::::::::.:::::: :::::::::::::::::::::::::::.::.:::::::::::
gi|298 DPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGGERVL
240 250 260 270 280 290
340 350 360 370 380 390
mKIAA1 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGS
::::::::::::::::::::::::::::::::.:.::::: :::::::::::::::::::
gi|298 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFTSQWHRGTTEGS
300 310 320 330 340 350
400 410 420 430 440 450
mKIAA1 AICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSSLQLP
:.:::::.:::..:.::::.:::::::::: :: ::::::::::::::::::::::::::
gi|298 AVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSARERKINSSLQLP
360 370 380 390 400 410
460 470 480 490 500 510
mKIAA1 DRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKA
::::::::::::::::::::.:::::.::::::::::::::: :::::::::::::::::
gi|298 DRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHTYDVLFLGTGDGRLHKA
420 430 440 450 460 470
520 530 540 550 560 570
mKIAA1 VTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTCGDCL
:... ::::::::::: .::::::::::.: :::::.:::::::::.:::::: .:::::
gi|298 VSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPMANCSLYRSCGDCL
480 490 500 510 520 530
580 590 600 610 620
mKIAA1 LARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPG--KPC
:::::::::.::.:. .:::::.::.::: :::::::.:.::. :: . .:: :::
gi|298 LARDPYCAWSGSSCKHVSLYQPQLATRPWIQDIEGASAKDLCSASSVVSPSFVPTGEKPC
540 550 560 570 580 590
630 640 650 660 670 680
mKIAA1 KQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGLGVFQ
.:::.:::::::::::::::::::::..:::::::::::.:::::::::::.:: :: ::
gi|298 EQVQFQPNTVNTLACPLLSNLATRLWLRNGAPVNASASCHVLPTGDLLLVGTQQ-LGEFQ
600 610 620 630 640 650
690 700 710 720 730 740
mKIAA1 CWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKSYW
:::.:::::::::::::::.:.:: :: .. ..::::.::::::::::.::::::.:::
gi|298 CWSLEEGFQQLVASYCPEVVEDGVADQTDEGGSVPVIISTSRVSAPAGGKASWGADRSYW
660 670 680 690 700 710
750 760 770 780 790 800
mKIAA1 NEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLNGV
.::::::::::.:..: ::.:::::..::.:::::::::::::: :.:::::::::::.
gi|298 KEFLVMCTLFVLAVLLPVLFLLYRHRNSMKVFLKQGECASVHPKTCPVVLPPETRPLNGL
720 730 740 750 760 770
810 820 830 840 850 860
mKIAA1 GPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS
:::::::::::::.:::: :: ::::::::::::::::::::::::::::::::::::::
gi|298 GPPSTPLDHRGYQSLSDSPPGSRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS
780 790 800 810 820 830
870
mKIAA1 VV
::
gi|298 VV
>>gi|37181909|gb|AAQ88758.1| semaphorin C [Homo sapiens] (837 aa)
initn: 4428 init1: 3330 opt: 4753 Z-score: 5591.1 bits: 1045.6 E(): 0
Smith-Waterman score: 4753; 84.852% identity (94.828% similar) in 812 aa overlap (62-871:27-837)
40 50 60 70 80 90
mKIAA1 SRRRTPLPAAVRAPRAAMGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPLGSEE
::::::::: : ::.::::.::::::
gi|371 MLRTAMGLRSWLAAPWGALPPRPPLLLLLLLLLLLQPPPPTWALSPRISLPLGSEE
10 20 30 40 50
100 110 120 130 140 150
mKIAA1 RLIRKFEAENISNYTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSADADR
: . .::::.::::::::::.::.:::::::::::::.::::::::::::::::.:::..
gi|371 RPFLRFEAEHISNYTALLLSRDGRTLYVGAREALFALSSNLSFLPGGEYQELLWGADAEK
60 70 80 90 100 110
160 170 180 190 200 210
mKIAA1 KQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAYIHIASFTLAQDEAGNV
:::::::::::.:::::::::::::..:::.:::::::::.:.::.. .::::.:: :::
gi|371 KQQCSFKGKDPQRDCQNYIKILLPLSGSHLFTCGTAAFSPMCTYINMENFTLARDEKGNV
120 130 140 150 160 170
220 230 240 250 260 270
mKIAA1 ILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSSRPTKTESSLNWLQ
.::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
gi|371 LLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSLRPTKTESSLNWLQ
180 190 200 210 220 230
280 290 300 310 320 330
mKIAA1 DPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGGERVL
:::::::::.:::::: :::::::::::::::::::::::::::.::.:::::::::::
gi|371 DPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGGERVL
240 250 260 270 280 290
340 350 360 370 380 390
mKIAA1 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGS
::::::::::::::::::::::::::::::::.:.::::: :::::::::::::::::::
gi|371 QQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPSPQDWRDTLFYGVFTSQWHRGTTEGS
300 310 320 330 340 350
400 410 420 430 440 450
mKIAA1 AICVFTMNDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSSLQLP
:.:::::.:::..:.::::.:::::::::: :: ::::::::::::::::::::::::::
gi|371 AVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTHPVPTPRPGACITNSARERKINSSLQLP
360 370 380 390 400 410
460 470 480 490 500 510
mKIAA1 DRVLNFLKDHFLMDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKA
::::::::::::::::::::.:::::.::::::::::::::: :::::::::::::::::
gi|371 DRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRVPGLHHTYDVLFLGTGDGRLHKA
420 430 440 450 460 470
520 530 540 550 560 570
mKIAA1 VTLSSRVHIIEELQIFPQGQPVQNLLLDSHGGLLYASSHSGVVQVPVANCSLYPTCGDCL
:... ::::::::::: .::::::::::.: :::::.:::::::::.:::::: .:::::
gi|371 VSVGPRVHIIEELQIFSSGQPVQNLLLDTHRGLLYAASHSGVVQVPMANCSLYRSCGDCL
480 490 500 510 520 530
580 590 600 610 620
mKIAA1 LARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGASVKELCKNSSYKARFLVPG--KPC
:::::::::.::.:. .:::::.::.::: :::::::.:.::. :: . .:: :::
gi|371 LARDPYCAWSGSSCKHVSLYQPQLATRPWIQDIEGASAKDLCSASSVVSPSFVPTGEKPC
540 550 560 570 580 590
630 640 650 660 670 680
mKIAA1 KQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGLGVFQ
.:::.:::::::::::::::::::::..:::::::::::.:::::::::::.:: :: ::
gi|371 EQVQFQPNTVNTLACPLLSNLATRLWLRNGAPVNASASCHVLPTGDLLLVGTQQ-LGEFQ
600 610 620 630 640 650
690 700 710 720 730 740
mKIAA1 CWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKSYW
:::.:::::::::::::::.:.:: :: .. ..::::.::::::::::.::::::.:::
gi|371 CWSLEEGFQQLVASYCPEVVEDGVADQTDEGGSVPVIISTSRVSAPAGGKASWGADRSYW
660 670 680 690 700 710
750 760 770 780 790 800
mKIAA1 NEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLNGV
.::::::::::.:..: ::.:::::..::.:::::::::::::: :.:::::::::::.
gi|371 KEFLVMCTLFVLAVLLPVLFLLYRHRNSMKVFLKQGECASVHPKTCPVVLPPETRPLNGL
720 730 740 750 760 770
810 820 830 840 850 860
mKIAA1 GPPSTPLDHRGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS
:::::::::::::.:::: :: ::::::::::::::::::::::::::::::::::::::
gi|371 GPPSTPLDHRGYQSLSDSPPGARVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDS
780 790 800 810 820 830
870
mKIAA1 VV
::
gi|371 VV
871 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Sun Mar 15 16:47:36 2009 done: Sun Mar 15 16:56:12 2009
Total Scan time: 1128.410 Total Display time: 0.420
Function used was FASTA [version 34.26.5 April 26, 2007]