FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4028.ptfa, 351 aa
 vs ./tmplib.26680 library

1768666 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.8647+/-0.00412; mu= 18.8421+/- 0.276
 mean_var=80.3049+/-18.448, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.1431

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0207  ( 541 res)   mbg02148                   ( 541) 1348  288 9.6e-79


>>mKIAA0207  ( 541 res)   mbg02148                        (541 aa)
 initn: 1014 init1: 972 opt: 1348  Z-score: 1506.1  bits: 287.8 E(): 9.6e-79
Smith-Waterman score: 1348;  56.034% identity (57.692% ungapped) in 348 aa overlap (6-351:202-541)

                                        10        20        30     
mKIAA4                          ALIPHFFLPQHTLFPEKMVSSCLDAQTGISHEDLI
                                     ::    ..::..::. : ... :  . .:.
mKIAA0 LEDHEIVVQVESTMPSESKFLFRKNYAKYEFFKNPVNFFPDQMVNWCQQSNGG--QAQLL
             180       190       200       210       220           

          40        50        60        70        80        90     
mKIAA4 QNFLNAGSFPEIQGFLQLRGSGRGSGRKLWKRFFCFLRRSGLYYSTKGTSKDPRHLQYVA
       :::::..: ::::::::..  :: :    ::...  :::::::::::::::.::::: .:
mKIAA0 QNFLNTSSCPEIQGFLQVKEVGRKS----WKKLYVCLRRSGLYYSTKGTSKEPRHLQLLA
     230       240       250           260       270       280     

         100       110       120       130       140       150     
mKIAA4 DVNESNVYVVTQGRKLYGMPTDFGFCVKPNKLRNGHKGLHIFCSEDEQSRTCWLAAFRLF
       :..::... .  :.: :. :.. :.:.:::: ..  : :...:.:::: ::::..::::.
mKIAA0 DLEESSIFYLIAGKKQYNAPNEHGMCIKPNKAKTEMKELRLLCAEDEQIRTCWMTAFRLL
         290       300       310       320       330       340     

         160       170       180       190       200       210     
mKIAA4 KYGVQLYKNYQQAQSRHLRLSYLGSPPLRSVSDNTLVAMDFSGHAGRVIDNPREALSAAM
       :::. ::.::.  : . :   .  . :.::::.:.::::::::. ::::::: :: :::.
mKIAA0 KYGMLLYQNYRIPQRKGLPPPF--NAPMRSVSENSLVAMDFSGQIGRVIDNPAEAQSAAL
         350       360         370       380       390       400   

         220         230       240       250       260       270   
mKIAA4 EEAQAWRKKTNHR--LSLPTTCSGSSLSAAIHRTQPWFHGRISREESQRLIGQQGLVDGV
       ::..::::....   ::  .    :.:.:.::::: :::::::::::.:.: :::::::.
mKIAA0 EEGHAWRKRSTRMNILSSQSPLHPSTLNAVIHRTQHWFHGRISREESHRIIKQQGLVDGL
           410       420       430       440       450       460   

           280       290       300       310       320       330   
mKIAA4 FLVRESQRNPQGFVLSLCHLQKVKHYLILPSEDEGCLYFSMDEGQTRFTDLLQLVEFHQL
       ::.:.:: ::..:::.::: ::.:.. ::: ::.:  .:..:.:.:.:.::.:::.:.::
mKIAA0 FLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFTLDDGNTKFSDLIQLVDFYQL
           470       480       490       500       510       520   

           340       350 
mKIAA4 NRGILPCLLRHCCARVAL
       :.:.::: :.: : ::::
mKIAA0 NKGVLPCKLKHHCIRVAL
           530       540 




351 residues in 1 query   sequences
1768666 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:38 2006 done: Mon Mar 27 10:59:39 2006
 Scan time:  0.570 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]