Comparison of KIAA cDNA sequences between mouse and human (FLJ00283)
<<Original sequence data>>
mouse mFLJ00283 (mid24030) length: 2659 bp, CDS: 3 - 1880
human (sh02088) length: 5245 bp, CDS: 1582 - 3084
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 814 - 2424 254 83 24.6
CDS: 2425 - 3084 360 111 23.6
3'UTR: 3085 - 5730 950 321 25.3
amino acid
CDS: 2425 - 3084 110 110 50.0
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
mid24030 1 .................................................. 1
sh02088 1 GCGCCTGCCTGTCCCCAGCCCCTCTCAGCTTGAACTCCTTCCTTCAAGTC 50
51 ----+----*----+----*----+----*----+----*----+----* 100
mid24030 1 .................................................. 1
sh02088 51 TGGGCCCTCGAGGCTTCCAGAGCGGCCTCCAGGGGTGCAGTCTCAGTTCC 100
101 ----+----*----+----*----+----*----+----*----+----* 150
mid24030 1 .................................................. 1
sh02088 101 CTACGCCAGCCGTCTCCGTCCTCCGCCTCCTCCGGGCCTGGCAGGTGGCA 150
151 ----+----*----+----*----+----*----+----*----+----* 200
mid24030 1 .................................................. 1
sh02088 151 CTGTCCGGAGGCGGAGCCTTGGGCGAGGGGTGGTTGCGGCGGAGGACGCA 200
201 ----+----*----+----*----+----*----+----*----+----* 250
mid24030 1 .................................................. 1
sh02088 201 ACCGAGCGGGCCTGCGGCCTCACCATGGACCCAGAATGCGCCCAGCTGCT 250
251 ----+----*----+----*----+----*----+----*----+----* 300
mid24030 1 .................................................. 1
sh02088 251 CCCGGCTCTCTGTGCTGTTCTGGTAGATCCCAGGCAGCCGGTGGCAGATG 300
301 ----+----*----+----*----+----*----+----*----+----* 350
mid24030 1 .................................................. 1
sh02088 301 ACACCTGTTTGGAGAAGCTCCTGGACTGGTTTAAAACGGTCACTGAAGGA 350
351 ----+----*----+----*----+----*----+----*----+----* 400
mid24030 1 .................................................. 1
sh02088 351 GAGTCCAGTGTCGTGCTGCTGCAGGAGCACCCCTGCCTGGTGGAGCTGCT 400
401 ----+----*----+----*----+----*----+----*----+----* 450
mid24030 1 .................................................. 1
sh02088 401 GTCCCATGTGCTGAAAGTCCAGGACCTGAGTTCTGGGGTCCTCTCCTTCT 450
451 ----+----*----+----*----+----*----+----*----+----* 500
mid24030 1 .................................................. 1
sh02088 451 CACTGCGCCTGGCAGGAACCTTCGCAGCCCAGGAAAACTGCTTCCAGTAT 500
501 ----+----*----+----*----+----*----+----*----+----* 550
mid24030 1 .................................................. 1
sh02088 501 CTTCAGCAGGGGGAGTTACTACCAGGGCTCTTTGGGGAGCCAGGACCCCT 550
551 ----+----*----+----*----+----*----+----*----+----* 600
mid24030 1 .................................................. 1
sh02088 551 CGGCCGAGCAACCTGGGCCGTCCCCACCGTGCGCAGCGGCTGGATCCAGG 600
601 ----+----*----+----*----+----*----+----*----+----* 650
mid24030 1 .................................................. 1
sh02088 601 GCCTGCGCTCCCTGGCACAGCACCCCAGCGCCCTGCGCTTCCTGGCCGAC 650
651 ----+----*----+----*----+----*----+----*----+----* 700
mid24030 1 .................................................. 1
sh02088 651 CATGGTGCGGTCGACACCATCTTCTCCCTGCAGGGAGACTCCAGCCTGTT 700
701 ----+----*----+----*----+----*----+----*----+----* 750
mid24030 1 .................................................. 1
sh02088 701 TGTGGCCTCGGCGGCCAGTCAGCTCCTGGTGCACGTCCTGGCTTTGTCCA 750
751 ----+----*----+----*----+----*----+----*----+----* 800
mid24030 1 .................................................. 1
sh02088 751 TGCGAGGTGGAGCCGAGGGGCAGCCCTGCCTGCCGGGGGGTGACTGGCCC 800
801 ----+----*----+----*----+----*----+----*----+----* 850
mid24030 1 .............AGATTGTGAACCATGTGGATGAGTCCCTGCATGCCAA 37
|||| || | || || || |||||| || ||
sh02088 801 GCGTGTGCCCAGAAGATCATGGATCACGTTGAAGAGTCCTTGTGCTCCGC 850
851 ----+----*----+----*----+----*----+----*----+----* 900
mid24030 38 AGCCACCCCCCAGGTCACACAGGCCTTGAATGTCCTGACTACGACCTTCG 87
||||||||| ||||||| |||||| |||| |||||||| ||||||||||
sh02088 851 GGCCACCCCCAAGGTCACTCAGGCCCTGAACGTCCTGACCACGACCTTCG 900
901 ----+----*----+----*----+----*----+----*----+----* 950
mid24030 88 GGCGCTGCCATAACCCCTGGACAGGGGTCCTCTGGGAGCGGCTAAGTCCC 137
|||||||||| | ||||||||||| | ||| |||| |||||| ||||||
sh02088 901 GGCGCTGCCAGAGCCCCTGGACAGAAGCCCTGTGGGTGCGGCTGAGTCCC 950
951 ----+----*----+----*----+----*----+----*----+----* 1000
mid24030 138 CCTGTTGCCCGCCTGTTTGAGAGAGACCCCATTCCAGCCGTGCACGCGCT 187
| || ||| | ||| | |||||||||||||| || |||| ||| || |
sh02088 951 CGCGTGGCCTGTCTGCTGGAGAGAGACCCCATCCCCGCCGCACACTCGTT 1000
1001 ----+----*----+----*----+----*----+----*----+----* 1050
mid24030 188 CATGGACCTTCTTCTTAGTGTGGC.......................... 211
| ||||||| ||||| |||||||
sh02088 1001 CGTGGACCTGCTTCTCTGTGTGGCTCGGTCAGGGCCCCGGGACGCAGCTG 1050
1051 ----+----*----+----*----+----*----+----*----+----* 1100
mid24030 212 .................................................. 212
sh02088 1051 GGGGGCCTGGGTGGGCAACTGTTTTCCTCGGATAATGCCCAGGGATGTCC 1100
1101 ----+----*----+----*----+----*----+----*----+----* 1150
mid24030 212 .................................................. 212
sh02088 1101 CACTGGCAGCCGGAGACTCTCTGAGGACATGGCCTGCAGTGAAGCGGCAC 1150
1151 ----+----*----+----*----+----*----+----*----+----* 1200
mid24030 212 .................................................. 212
sh02088 1151 CGGGGTGACCCTGGAACCCTCATGGGGAAAGGCCTGTCTTGGGCTGGGCG 1200
1201 ----+----*----+----*----+----*----+----*----+----* 1250
mid24030 212 .................................................. 212
sh02088 1201 CCTCCAGTGCCGGAGCCATGGCAGTCTCAGCCAGGCCTCGAATGGGGTTT 1250
1251 ----+----*----+----*----+----*----+----*----+----* 1300
mid24030 212 ........................................CAGGTCGCCT 221
||| || ||
sh02088 1251 TGAGGGTGGGGGAGTAATTTTTCTCTCTGGGGTCTCCCTGCAGTTCTCCC 1300
1301 ----+----*----+----*----+----*----+----*----+----* 1350
mid24030 222 GTGTTGAATTTTGCAGCCTGTGGCCTGTGGGAGATGCTGGCCCAGACTCT 271
||||| | || | | | | | |||||||||||| |||| | | ||||
sh02088 1301 GTGTTCAGTTCTTCCGACGGCAGCCTGTGGGAGACAGTGGCGCGGGCTCT 1350
1351 ----+----*----+----*----+----*----+----*----+----* 1400
mid24030 272 GAGCCGCCTGAGCCCCATACAAGCTGGGCCTCTAGCCCTGGGGACCCTGA 321
|||| ||||| | |||| || || || || || |||||| |||||
sh02088 1351 GAGCTGCCTGGGTCCCACCCACATGGGACCCCTGGCTTTGGGGATCCTGA 1400
1401 ----+----*----+----*----+----*----+----*----+----* 1450
mid24030 322 AACTTCAGCACT...................................... 333
| || ||||||
sh02088 1401 AGCTCGAGCACTGGTATGGTCTGGGGTGCATTTCATTCCGAGGCGGGTGC 1450
1451 ----+----*----+----*----+----*----+----*----+----* 1500
mid24030 334 .................................................. 334
sh02088 1451 TGGGAGCTGGGGCAGGCAGGGAGGTTGAGAGCGCAGCCCTCATGGCAGGG 1500
1501 ----+----*----+----*----+----*----+----*----+----* 1550
mid24030 334 .................................................. 334
sh02088 1501 GAGTTCCGGACACCAGGGACAGTCAGGCGGCCGTGCGGGGTGTGACTGGG 1550
1551 ----+----*----+----*----+----*----+----*----+----* 1600
mid24030 334 .................................................. 334
sh02088 1551 TGGTGCGTGGGTTGCGCGCGGCAGCTTCTGAAGGTTCTTTAGCAACAGAA 1600
R F F S N R I
1601 ----+----*----+----*----+----*----+----*----+----* 1650
mid24030 334 .................................................. 334
sh02088 1601 TAATTGTTTCAGACCAAAGCTCTGCGAGATCCCCAGAGGTGAGAAGGATG 1650
I V S D Q S S A R S P E V R R M
1651 ----+----*----+----*----+----*----+----*----+----* 1700
mid24030 334 .................................................. 334
sh02088 1651 CGGGAGCTGCTCTGCTTAGAGCAGGGTGGTCCTGCCGACGCCCTGCGCTC 1700
R E L L C L E Q G G P A D A L R S
1701 ----+----*----+----*----+----*----+----*----+----* 1750
mid24030 334 .................................................. 334
sh02088 1701 CGCTGCCCTCCCACCTGTCCCCCACCGCAGCTTTGGTTGGGGGTTTCGGA 1750
A A L P P V P H R S F G W G F R S
1751 ----+----*----+----*----+----*----+----*----+----* 1800
mid24030 334 .................................................. 334
sh02088 1751 GCTCCCCAGCACACACACCATGCGGGTGGGGGGCCTGGGGGCGGTGCAAC 1800
S P A H T P C G W G A W G R C N
1801 ----+----*----+----*----+----*----+----*----+----* 1850
mid24030 334 .................................................. 334
sh02088 1801 GGCAGAGCCTGGGGTCAGGACAGGTGGGAAGGCCGTGGATGGCCTGCCAG 1850
G R A W G Q D R W E G R G W P A S
1851 ----+----*----+----*----+----*----+----*----+----* 1900
mid24030 334 .................................................. 334
sh02088 1851 TGTTCCAGGTGGGCTCACATTAGGGGTGGAAGTGACCTCAGGACCTGCTG 1900
V P G G L T L G V E V T S G P A A
1901 ----+----*----+----*----+----*----+----*----+----* 1950
mid24030 334 .................................................. 334
sh02088 1901 CCCACAGGGCCCAGGGGTACCATGAGGGTCCAGCTCTGAGCTCCGGGGTC 1950
H R A Q G Y H E G P A L S S G V
1951 ----+----*----+----*----+----*----+----*----+----* 2000
mid24030 334 .................................................. 334
sh02088 1951 TCCGAATGTTTAGGAGAGAGTAGACCGGGGGAGGATGGAGGAACAGGCCC 2000
S E C L G E S R P G E D G G T G P
2001 ----+----*----+----*----+----*----+----*----+----* 2050
mid24030 334 .................................................. 334
sh02088 2001 GGCCCTGCAGGAATGCACTGTGGGGACACTGCCTCCACCTAGGCCCAGAC 2050
A L Q E C T V G T L P P P R P R R
2051 ----+----*----+----*----+----*----+----*----+----* 2100
mid24030 334 .................................................. 334
sh02088 2051 GTGAGGGCAGGTCCCTCCCACAGAGTGGACGCTGTACACACCTGGGGACA 2100
E G R S L P Q S G R C T H L G T
2101 ----+----*----+----*----+----*----+----*----+----* 2150
mid24030 334 .................................................. 334
sh02088 2101 CCCGGGAGGCTGGGGGCACCCCATCCCTGTCCCCCTGAGCGGGCACTGCC 2150
P G R L G A P H P C P P E R A L P
2151 ----+----*----+----*----+----*----+----*----+----* 2200
mid24030 334 .................................................. 334
sh02088 2151 CCTCTCTCTGGGTGCATGGCCAGGCCCTCCTGGAGGCCCCTCAGTATCTG 2200
L S L G A W P G P P G G P S V S A
2201 ----+----*----+----*----+----*----+----*----+----* 2250
mid24030 334 .................................................. 334
sh02088 2201 CTCCTAAGGACATCAGGAGTGTCAGGCCCATCTCCTTGGTCAGGCCTGTC 2250
P K D I R S V R P I S L V R P V
2251 ----+----*----+----*----+----*----+----*----+----* 2300
mid24030 334 .................................................. 334
sh02088 2251 CTCCCCGCCACTCTGTCCCATGGCGTCCCCTGGCCAGTGGCCTGCAGAGA 2300
L P A T L S H G V P W P V A C R E
2301 ----+----*----+----*----+----*----+----*----+----* 2350
mid24030 334 .................................................. 334
sh02088 2301 ATGTTTCTCGGGGGGTGTCCCAACCCCCTGGCTGATTTGCCCCAGGCTTG 2350
C F S G G V P T P W L I C P R L A
2351 ----+----*----+----*----+----*----+----*----+----* 2400
mid24030 334 .................................................. 334
sh02088 2351 CTGGGGACATTAGGAGCACAGCCAACTTGTCTCGCAGCCAGGGTCGCGGC 2400
G D I R S T A N L S R S Q G R G
2401 ----+----*----+----*----+----*----+----*----+----* 2450
P Q E L R T Q A F
mid24030 334 ......................GTCCCCAGGAATTGAGGACCCAGGCCTT 361
|||| |||| | ||||||||||||||||
sh02088 2401 ACTCACCTCGCGTTTGTCTCCAGTCCACAGGCACTGAGGACCCAGGCCTT 2450
T H L A F V S S P Q A L R T Q A F
2451 ----+----*----+----*----+----*----+----*----+----* 2500
G V L L Q P L A C I L K A T T Q A
mid24030 362 TGGAGTCCTCCTACAGCCACTGGCCTGTATCCTGAAAGCTACCACTCAGG 411
||||| || ||||| ||||||||| ||||||| || || |||||
sh02088 2451 CCAGGTCCTTCTCCAGCCCCTGGCCTGTGTCCTGAAGGCCACGGTTCAGG 2500
Q V L L Q P L A C V L K A T V Q A
2501 ----+----*----+----*----+----*----+----*----+----* 2550
P G P P G L L D G T V G S L L T
mid24030 412 CCCCTGGACCTCCAGGCTTGCTGGATGGGACTGTGGGTAGCTTGCTGACT 461
|||| ||||| |||||||||||||| ||||| | | |||
sh02088 2501 CCCCCGGACCCCCAGGCTTGCTGGACGGGACGGCAGACGATGCCACGACG 2550
P G P P G L L D G T A D D A T T
2551 ----+----*----+----*----+----*----+----*----+----* 2600
V D I L L A S K S A C V G L L C Q
mid24030 462 GTGGATATACTCTTGGCTTCAAAGTCAGCCTGTGTGGGACTCCTTTGCCA 511
||||| | |||| |||| || ||||| |||| | || ||||| ||||
sh02088 2551 GTGGACACACTCCTGGCCTCCAAGTCGTCCTGCGCCGGCCTCCTGTGCCG 2600
V D T L L A S K S S C A G L L C R
2601 ----+----*----+----*----+----*----+----*----+----* 2650
T L A H L E E L Q M L P Q C P S P
mid24030 512 GACTCTGGCTCACCTGGAGGAGCTGCAGATGCTGCCCCAGTGCCCCTCAC 561
|| |||||||||||||||||||||||| |||||||||| |||| ||||
sh02088 2601 CACCCTGGCTCACCTGGAGGAGCTGCAGCCGCTGCCCCAGCGCCCTTCAC 2650
T L A H L E E L Q P L P Q R P S P
2651 ----+----*----+----*----+----*----+----*----+----* 2700
W P Q V H L L Q A A L T I L H L
mid24030 562 CCTGGCCACAGGTGCATCTGCTGCAAGCTGCTTTGACTATATTGCATCTC 611
| ||||| |||| | ||| ||| ||| | ||||| | ||| |||
sh02088 2651 CGTGGCCCCAGGCGTCTCTACTGGGGGCTACAGTGACTGTCCTGCGGCTC 2700
W P Q A S L L G A T V T V L R L
2701 ----+----*----+----*----+----*----+----*----+----* 2750
C D G S A D P S S S A G G R L C G
mid24030 612 TGTGATGGCTCAGCGGACCCCAGCTCCAGTGCAGGAGGCCGTCTCTGTGG 661
||||| ||||| || | ||| |||||||| || |||| ||||||||
sh02088 2701 TGTGACGGCTCGGCTGCCCCTGCCTCCAGTGTGGGGGGCCACCTCTGTGG 2750
C D G S A A P A S S V G G H L C G
2751 ----+----*----+----*----+----*----+----*----+----* 2800
- S G W L C S C P A S S P * L L G
mid24030 662 GA.CTCTGGGTGGCTGTGTTCGTGTCCAGCGAGCAGCCCTTGACTTCTTG 710
|| | |||| ||||| || || ||||||||||||||||| |||||| ||
sh02088 2751 GACCCCTGGCGGGCTGCGTCCGGGTCCAGCGAGCAGCCCTCGACTTCCTG 2800
T P G G L R P G P A S S P R L P G
2801 ----+----*----+----*----+----*----+----*----+----* 2850
D P V S G D K P P G V G S G G I
mid24030 711 GGGACCCTGTCTCAGGGGACAAGCCCCCTGGAGTTGGTTCTGGAGGTATT 760
||||| ||||| ||||||||| |||||| |||| |||| | ||| |
sh02088 2801 GGGACGCTGTCACAGGGGACAGGCCCCCAGGAGCTGGTGACGCAGGCGCT 2850
D A V T G D R P P G A G D A G A
2851 ----+----*----+----*----+----*----+----*----+----* 2900
C C S P E D P G E P R V Q P -
mid24030 761 TGCTGTTCTCCTGAAGACCCTGGAGAGCCCAGAGTCCAGCCCCA...... 804
|||||| |||||| || ||| |||||||| | ||||||||||
sh02088 2851 TGCTGTCCTCCTGGAGTGCCTCGAGAGCCCCGGCTCCAGCCCCACGGTAC 2900
C C P P G V P R E P R L Q P H G T
2901 ----+----*----+----*----+----*----+----*----+----* 2950
mid24030 805 .................................................. 805
sh02088 2901 GGTGGTGGGGATAGAGAGCGAGGAGAGGAGGGAGGCAGAGGCAGTGGGAC 2950
V V G I E S E E R R E A E A V G P
2951 ----+----*----+----*----+----*----+----*----+----* 3000
mid24030 805 .................................................. 805
sh02088 2951 CCACCCCTGACTCCACCCCGTCCCGTGCAGGCCTCTGCGGATGGGGCCTT 3000
T P D S T P S R A G L C G W G L
3001 ----+----*----+----*----+----*----+----*----+----* 3050
mid24030 805 .................................................. 805
sh02088 3001 CACACAGGGCCACAGAGCTGCTGCTCAGAGAGCTTCACGATGCAGGTGGC 3050
H T G P Q S C C S E S F T M Q V A
3051 ----+----*----+----*----+----*----+----*----+----* 3100
mid24030 805 .................................................. 805
sh02088 3051 TGCATGGGGCGGGCCCAGGGCCTCTTGTTGGTGAAGATACATCAGCACGC 3100
A W G G P R A S C W *
3101 ----+----*----+----*----+----*----+----*----+----* 3150
mid24030 805 .................................................. 805
sh02088 3101 AGGGGTGTGTGGGGCCGTGGGGAGCAGGGGCACTGGTCAGGCGGCCTGCG 3150
3151 ----+----*----+----*----+----*----+----*----+----* 3200
mid24030 805 .................................................. 805
sh02088 3151 GGGAATTCTGGACAAGGGAAATGAGGTGGCACCAAGACGGCCCTGGGCGT 3200
3201 ----+----*----+----*----+----*----+----*----+----* 3250
mid24030 805 .................................................. 805
sh02088 3201 GGGCTTTGGGTTCTCCTAAGCGCCATTTGTGAACGTGCCTACTCCACAGC 3250
3251 ----+----*----+----*----+----*----+----*----+----* 3300
mid24030 805 .................................................. 805
sh02088 3251 CCCTCACGGAGCTGGGCCCTGGCAGGTACAGACCTTGTGCCACCTGCCGC 3300
3301 ----+----*----+----*----+----*----+----*----+----* 3350
mid24030 805 .................................................. 805
sh02088 3301 TGAGCAGACAGCAGACAACTTTGGAGGAAGGGCCCAGGGCTTCTTGGGAT 3350
3351 ----+----*----+----*----+----*----+----*----+----* 3400
mid24030 805 .................................................. 805
sh02088 3351 CCTAAGGAAAAGGTGCCCTGCGTAATTGGTCATGTTTTGATGTAGAAATC 3400
3401 ----+----*----+----*----+----*----+----*----+----* 3450
mid24030 805 .................................................. 805
sh02088 3401 CCGTTGCCTGGGTTGTGGGTCTTCTGGTGAGGGCTGCCGCCACCTCCTCC 3450
3451 ----+----*----+----*----+----*----+----*----+----* 3500
mid24030 805 .................................................. 805
sh02088 3451 TGCTCACAGTCTGGGAAGCCGGTTCTGCAGCATATTCTGCCCTATTAAAA 3500
3501 ----+----*----+----*----+----*----+----*----+----* 3550
mid24030 805 .................................................. 805
sh02088 3501 TCAGCCCAGGAGGGGCGTGGGGCTCACAGCTGTGATTACTGTGCGTTGGG 3550
3551 ----+----*----+----*----+----*----+----*----+----* 3600
mid24030 805 .................................................. 805
sh02088 3551 GGGCCGAGGTGGGGGGATCAATGGAGCCCAGGACTTTTGAGGCCAGCCTG 3600
3601 ----+----*----+----*----+----*----+----*----+----* 3650
mid24030 805 .................................................. 805
sh02088 3601 GGCAACATAGCAAGATCCCATCTCTACAAAAAAATAGAAAAATTAGCCCC 3650
3651 ----+----*----+----*----+----*----+----*----+----* 3700
mid24030 805 .................................................. 805
sh02088 3651 AGGAGTATAGCTCAGGGGTAGAGCATTTGACTGCAAAAATTAGCCAGGCG 3700
3701 ----+----*----+----*----+----*----+----*----+----* 3750
mid24030 805 .................................................. 805
sh02088 3701 TGGTGATGTGTGCCTCTAGCCCCAGCTACTCATGAGGCTGAGGCAGGAGG 3750
3751 ----+----*----+----*----+----*----+----*----+----* 3800
mid24030 805 .................................................. 805
sh02088 3751 ACTGTTTGAGCCTGGGAGGTGGAGGCTGCAGTGAACTGTGATTGCAGTCC 3800
3801 ----+----*----+----*----+----*----+----*----+----* 3850
mid24030 805 .................................................. 805
sh02088 3801 AGCCTGGATGACACATTGAGACCCTGTCTCTAAAAAAGAAGGAAGCCCAG 3850
3851 ----+----*----+----*----+----*----+----*----+----* 3900
mid24030 805 .................................................. 805
sh02088 3851 CGTTCCCTTCTCTCTCCACTTCCTGTCCCCATTGCTGTCCCTGGAGTACG 3900
3901 ----+----*----+----*----+----*----+----*----+----* 3950
mid24030 805 .................................................. 805
sh02088 3901 GGCAGCACAGGTGAAGGCGAGGGGGACAGACAGACAGCCTGCCCCTCCGT 3950
3951 ----+----*----+----*----+----*----+----*----+----* 4000
mid24030 805 ..................................TGGTCCTAAAGAAGGC 820
||| || ||||||||
sh02088 3951 CTCCCGTGGCCCTGCAGCCCACCCTATCTGCTCCAGGTTCTGAAGAAGGC 4000
4001 ----+----*----+----*----+----*----+----*----+----* 4050
mid24030 821 CTTCCAGGCCACACTCAGATGGCTCCAGAACCCACACAAGACCCCCAGCA 870
|||||||||||| ||||| ||||||| || | ||| |||||||||| ||
sh02088 4001 CTTCCAGGCCACGCTCAGGTGGCTCCTGAGCTCACCCAAGACCCCCGGCT 4050
4051 ----+----*----+----*----+----*----+----*----+----* 4100
mid24030 871 GCTCTGATCTCAGCTCCGACGCCCTGCTGTTTCTCGGAGAGCTGTTCCCC 920
||||||||||| || || | || || ||| ||| |||||||||||||
sh02088 4051 GCTCTGATCTCGGCCCCCTCATCCCGCAGTTCCTCAGAGAGCTGTTCCCT 4100
4101 ----+----*----+----*----+----*----+----*----+----* 4150
mid24030 921 ATACTACAGAAGCGCCTATGCAGCCCATGTTGGGAGGTGAGGGACTCTGC 970
| || ||||| ||||| ||| ||| || ||||||||||||||||| ||
sh02088 4101 GTGCTGCAGAAACGCCTGTGCCACCCCTGCTGGGAGGTGAGGGACTCCGC 4150
4151 ----+----*----+----*----+----*----+----*----+----* 4200
mid24030 971 CCTGGAGTTCCTGACGCATCTGATCCGACACTGGGGAGGGCAGGCTGACT 1020
||| ||||||||||| || |||| | | ||||||||||| ||||||||||
sh02088 4151 CCTCGAGTTCCTGACCCAGCTGAGCAGGCACTGGGGAGGACAGGCTGACT 4200
4201 ----+----*----+----*----+----*----+----*----+----* 4250
mid24030 1021 TCAGAGAGGCACTGCGTTCCTCAGAAGTACCCACACTTGCCCTCCAGCTT 1070
||||| ||||| | ||||| || || || ||||| |||||
sh02088 4201 TCAGATGCGCACTCTTGGCTTCAGAGGTGCCTCAGCTGGCCCTGCAGCTC 4250
4251 ----+----*----+----*----+----*----+----*----+----* 4300
mid24030 1071 CTCCAAGACCCAGAGAGTTACGTCCGAGCAAGTGCCGTGGGTGCCGCTGG 1120
||||| ||||| |||||||| |||||||| ||||| ||| ||| ||
sh02088 4251 CTCCAGGACCCTGAGAGTTATGTCCGAGCGAGTGCAGTGACCGCCATGGG 4300
4301 ----+----*----+----*----+----*----+----*----+----* 4350
mid24030 1121 GCAGCTCTCCAGCCAGGGTCTGCAGGCCGCTCCCGCTAGCCCCGAGAACT 1170
|||||| ||||||||||| ||||| ||| ||| | ||||| ||| |
sh02088 4301 GCAGCTGTCCAGCCAGGGCCTGCA...CGCCCCCACCAGCCCTGAGCATG 4347
4351 ----+----*----+----*----+----*----+----*----+----* 4400
mid24030 1171 CGCAGGCCCAACAGGGCCTACTCATGGACCTTATGCATATCCTGTCCACT 1220
| |||||| ||| |||| || |||| || |||| ||||| |||
sh02088 4348 CAGAGGCCCGGCAGAGCCTGTTCCTGGAGCTCCTGCACATCCTCTCCGTA 4397
4401 ----+----*----+----*----+----*----+----*----+----* 4450
mid24030 1221 GACTCAGAGGGCTTCCCTCGAAGGGCTGTGTTACGGGTCTTCACGGACTG 1270
||||| ||||||||||| || |||| || | | |||||||| || ||
sh02088 4398 GACTCGGAGGGCTTCCCACGGCGGGCGGTCATGCAAGTCTTCACTGAGTG 4447
4451 ----+----*----+----*----+----*----+----*----+----* 4500
mid24030 1271 GCTGAGGGATGGCCATGCTGACGTGGTTCGAGACACGGAGTGGTTCGTGG 1320
|||| |||| ||||| || |||| || | ||||||||| ||||||||
sh02088 4448 GCTGCGGGACGGCCACGCCGACGCGGCCCAGGACACGGAGCAGTTCGTGG 4497
4501 ----+----*----+----*----+----*----+----*----+----* 4550
mid24030 1321 CCACTGTTCTCCAGGCAGTGAGCCGGGATCTGGACTGGGAGGTCCGAGTG 1370
||||||| || ||||| | ||||| ||| ||||||||||||||||| |
sh02088 4498 CCACTGTGCTGCAGGCGGCGAGCCAGGACCTGGACTGGGAGGTCCGCGCC 4547
4551 ----+----*----+----*----+----*----+----*----+----* 4600
mid24030 1371 CAGGGTTTGGAGCTGGCACGGGTGTTCCTCACCCAGGCACTGGGCCAGCC 1420
||||| |||||||||| | |||||||| |||| | |||| | |||
sh02088 4548 CAGGGCCTGGAGCTGGCCCTCGTGTTCCTGGGCCAGACTTTGGGGCCGCC 4597
4601 ----+----*----+----*----+----*----+----*----+----* 4650
mid24030 1421 CAGCCTCCACTGTCCCTATACAGTGGGCCTGCCCAGGGCCTCCTCTCCCC 1470
| |||||| |||||| | |||| ||| ||| || || | |||
sh02088 4598 GCGTACCCACTGCCCCTATGCCGTGGCCCTACCCGAGGTGGCCCCAGCCC 4647
4651 ----+----*----+----*----+----*----+----*----+----* 4700
mid24030 1471 GCCCACACCCGGAATTCTTGCAGACTCTCTGCCGTCTGCCGCTCTTTGAG 1520
|||| | | || || | ||||||||| || |||||||||
sh02088 4648 AGCCACTCACCGAGGCACTGAGGGCTCTCTGCCACGTGGGGCTCTTTGAC 4697
4701 ----+----*----+----*----+----*----+----*----+----* 4750
mid24030 1521 TTTGCCTTTTGTGCCTTGCTTGACTGTGACCGACCGGTGGCCCAAAAGGC 1570
|| ||||||||||||||| ||||||| ||||| || ||||| || ||| |
sh02088 4698 TTCGCCTTTTGTGCCTTGTTTGACTGCGACCGCCCTGTGGCGCAGAAGTC 4747
4751 ----+----*----+----*----+----*----+----*----+----* 4800
mid24030 1571 CTGTGACCTGCTCCTCTTCTTGAGGGACAAGACAGTTCCCTGCAGTAGCC 1620
|||||||| || |||||| |||||||||||| | | ||| ||| ||||
sh02088 4748 TTGTGACCTCCTTCTCTTCCTGAGGGACAAGATTGCTTCCTACAGCAGCC 4797
4801 ----+----*----+----*----+----*----+----*----+----* 4850
mid24030 1621 CTCGGGAGGCAGGGGACAGCCCCAACTCAGCCTCAGTGGAGGCTGCCCTG 1670
|||||||| ||| |||||||||| | ||||| | ||||| |||||
sh02088 4798 TGCGGGAGGCCAGGGGCAGCCCCAACACTGCCTCCGCAGAGGCCACCCTG 4847
4851 ----+----*----+----*----+----*----+----*----+----* 4900
mid24030 1671 CAGAGGTGGCGGGAAGGAGAGCAGGCCCAGCCCCTAGGGGACCTGGATCC 1720
| ||||||||||| || |||||||||||||||| |||||||| ||| ||
sh02088 4848 CCGAGGTGGCGGGCGGGTGAGCAGGCCCAGCCCCCAGGGGACCAGGAGCC 4897
4901 ----+----*----+----*----+----*----+----*----+----* 4950
mid24030 1721 TGAGGCCATGCTAGCCATCCTCAGGGCCTTAGACCTGGAGGGCCTGCAGG 1770
|||||| |||| ||||| |||||| || || ||||||||||||||| |
sh02088 4898 TGAGGCTGTGCTGGCCATGCTCAGGTCCCTAAACCTGGAGGGCCTGCGGA 4947
4951 ----+----*----+----*----+----*----+----*----+----* 5000
mid24030 1771 GCAGGCTGGCCAAGAGCAGCGACCATGTGGAGAAGAGCCCACAGTCCCTG 1820
||| ||||||| ||||||||||||| ||||||||||| || ||||||||
sh02088 4948 GCACGCTGGCCGAGAGCAGCGACCACGTGGAGAAGAGTCCCCAGTCCCTC 4997
5001 ----+----*----+----*----+----*----+----*----+----* 5050
mid24030 1821 CTGCAGGACATGCTGGCCACGGTGGGTGTGTTGGAGGAGAACGAAGCTGA 1870
|||||||||||||||||||||| || | || ||| | |||| || ||
sh02088 4998 CTGCAGGACATGCTGGCCACGGGAGGCTTCCTGCAGGGGGACGAGGCCGA 5047
5051 ----+----*----+----*----+----*----+----*----+----* 5100
mid24030 1871 CTGCTACTAAGGCGTGTCCACGTCCTGTCCCTGTTTCCATCCTGTGCCAG 1920
|||||||| || | ||| || |||||
sh02088 5048 CTGCTACTGAGCAG....................AACCAGACTCTGCCA. 5076
5101 ----+----*----+----*----+----*----+----*----+----* 5150
mid24030 1921 CAGGAGGACCCCAGCCCAGGTCAGCAGCTCAAGAGACCCTGCAGGGGGTG 1970
| | ||||| ||
sh02088 5077 .....................CTGGGGCTCAGGA................ 5089
5151 ----+----*----+----*----+----*----+----*----+----* 5200
mid24030 1971 GATCACATGTTTTAAGCCGGGTACGATAACACACCTATGATCACAGCGTT 2020
sh02088 5090 .................................................. 5090
5201 ----+----*----+----*----+----*----+----*----+----* 5250
mid24030 2021 TAAAAGACCAAGGGAGGAGAATGTAGAGTTCCCGGCCAGCCTGGACTAGA 2070
||||||||||
sh02088 5090 .......CCAAGGGAGG................................. 5099
5251 ----+----*----+----*----+----*----+----*----+----* 5300
mid24030 2071 TAGCAACCCTGTCTCAAGAAAACCCAAGAAATCAAATCAAAACAAAATCT 2120
| || || |
sh02088 5100 .......................................CAGCACCATGT 5110
5301 ----+----*----+----*----+----*----+----*----+----* 5350
mid24030 2121 CCACCCTTTGTGTGCTGTGCATGCAGACCGGAGGCCAGCCTCCAGTGTTC 2170
|| | | | ||| |||||| | | | |
sh02088 5111 CCTTCTGTGGGACACTG.................CCAGCCCCAGGGCTCC 5143
5351 ----+----*----+----*----+----*----+----*----+----* 5400
mid24030 2171 TTCCTCAGGTGCTGTCCACCTTGGTTTTTGAGAAAAGGTCTCTCACTAGG 2220
sh02088 5144 .................................................. 5144
5401 ----+----*----+----*----+----*----+----*----+----* 5450
mid24030 2221 ACTTGGTACTCCCTGATGAGGCTTGCCAGTGAGCTCCAGGGATCCCGCCA 2270
|| | ||| | | ||| | ||||
sh02088 5144 ..................AGCCCAGCCCGGTGGATCCTCTGGGGAAGCCA 5175
5451 ----+----*----+----*----+----*----+----*----+----* 5500
mid24030 2271 CCACCTCCTCAGCACCGGGATCATAATACTGTATCCCTGTGCCTGGGTCT 2320
||| || | | | ||| | |
sh02088 5176 GGACCAGGAGAGAAGCAAGGTCAAGAAA...................... 5203
5501 ----+----*----+----*----+----*----+----*----+----* 5550
mid24030 2321 ACATACATGGGTGCTGGGATTTGAACTCAGGTCCTCATGCTTGCACGGCA 2370
sh02088 5204 .................................................. 5204
5551 ----+----*----+----*----+----*----+----*----+----* 5600
mid24030 2371 AGCACTTTACCCACTGAACCATCTCCCCAGGTCCCACAGAATCCTACTTT 2420
|||||||| |
sh02088 5204 ...............................TCCCACAGTTT........ 5214
5601 ----+----*----+----*----+----*----+----*----+----* 5650
mid24030 2421 CCACGTGTTATTAAAGAGGTGGCTTGTTTTCTGCTCAGAACAGGTAGTAC 2470
| ||||||||| || ||| ||
sh02088 5215 ....GATGTATTAAAGAAATGACTTATT...................... 5238
5651 ----+----*----+----*----+----*----+----*----+----* 5700
mid24030 2471 TGATGTCTATAACCTTCAATTGTGTATGTGGATTAACAAAGCCCCACTGT 2520
sh02088 5239 .................................................. 5239
5701 ----+----*----+----*----+----*----+----*----+----* 5750
mid24030 2521 GATCTGCATATGGCCTTCAGCTCTCTGCTCCGTCACCCAACGTTTGAAAG 2570
||| |||
sh02088 5239 .......................TCTACTC.................... 5245
5751 ----+----*----+----*----+----*----+----*----+----* 5800
mid24030 2571 TCCCATAATCTTTAAAGAATTCAGATACATTAAAAGTTAAAAGTCACAAC 2620
sh02088 5246 .................................................. 5246
5801 ----+----*----+----*----+----*----+---- 5839
mid24030 2621 TGTGGGTCCTGTAAAATAAAATAAAAAAAAATTTTTTTT 2659
sh02088 5246 ....................................... 5246