FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4173.ptfa, 381 aa vs ./tmplib.26680 library 1768636 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.2214+/-0.00453; mu= 12.4792+/- 0.303 mean_var=96.1747+/-22.004, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1308 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1027 ( 2564 res) mia05043 (2564) 380 82 3.5e-16 mKIAA0320 ( 1471 res) mbg01292 (1471) 369 80 1e-15 >>mKIAA1027 ( 2564 res) mia05043 (2564 aa) initn: 353 init1: 183 opt: 380 Z-score: 383.0 bits: 82.3 E(): 3.5e-16 Smith-Waterman score: 380; 25.000% identity (25.915% ungapped) in 340 aa overlap (31-367:1348-1678) 10 20 30 40 50 mKIAA4 VAAAVVAGSPAACQCPLGAMASGSAGKPTGEAASPAPGSAVGGAS---SQPRKRLVSICD . ::: : ...:. .. ..:...: mKIAA1 QEDRAQVVSILKGISMSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLITMCT 1320 1330 1340 1350 1360 1370 60 70 80 90 100 110 mKIAA4 HCKGKMQLVADLLLLSSEARPVLFEGPASPGAGAESFEQCRDTIIARTKGLSILTHDVQS . .. : : : . :. :.:.:..: . :. : :... .: :. ... mKIAA1 Q-QAPGQKECDNALRQLETVRELLENPVQP-INDMSYFGCLDSVMENSKVLGEAMTGISQ 1380 1390 1400 1410 1420 1430 120 130 140 150 160 170 mKIAA4 QLNMGRFGEAGDSLVELGDLVVSLTECSAHAAYLAAVATPGAQPAQPGLVDRYRVTRCRH . . : . : ::... . . ..:: .:.::::..:. :..: .: :::. . .: . mKIAA1 NAKNGNLPEFGDAIATASKALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQ 1440 1450 1460 1470 1480 1490 180 190 200 210 220 230 mKIAA4 EVEQGCAVLRATPLADMTPQLLLEVSQGLSRNLKFLTDACALASDKSRDRFSREQFKLGV ....: : . : : .: .. .... . : ..: ::: .. . ...:: .. mKIAA1 AIQMACQSL-GEP--GCTQAQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSA 1500 1510 1520 1530 1540 1550 240 250 260 270 280 290 mKIAA4 KCMSTSASALLACVREVKAAPSELARSRCALFSGPLVQAVSALVGFATEPQFLGRAAAVS : ...:.. :. .. . . .: :..: ..::..::. : .::..:.: . : .: mKIAA1 KEVANSTANLVKTIKALDGDFTEENRAQCRAATAPLLEAVDNLSAFASNPEFSSVPAQIS 1560 1570 1580 1590 1600 1610 300 310 320 330 340 350 mKIAA4 TEGKAVQTAILGGAMSVVSACVLLTQCLRDLAQHPDGSAKMSDHRERLRNSACAVSEGCT ::.:.. :. .: ... . : : : :: .: . : : . . .::.. mKIAA1 PEGRAAMEPIVISAKTMLESAGGLIQTARALAVNPRDPPRWS----VLAGHSRTVSDSIK 1620 1630 1640 1650 1660 360 370 380 mKIAA4 LLSQALRERSSPRTLPPVNSNSVN : ..:... mKIAA1 KLITSMRDKAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREGISQEALHTQMLTA 1670 1680 1690 1700 1710 1720 >>mKIAA0320 ( 1471 res) mbg01292 (1471 aa) initn: 348 init1: 212 opt: 369 Z-score: 374.7 bits: 80.0 E(): 1e-15 Smith-Waterman score: 369; 24.269% identity (25.228% ungapped) in 342 aa overlap (26-367:243-571) 10 20 30 40 50 mKIAA4 VAAAVVAGSPAACQCPLGAMASGSAGKPTGEAASPAPGSAVGGASSQPRKRLVSI : :... : . :: . .: :. . mKIAA0 DQMQVIGNLKNISMASSKLLLAAKSLSVDPGAPNAKNLLAAAARAVTESINQ----LIML 220 230 240 250 260 60 70 80 90 100 110 mKIAA4 CDHCKGKMQLVADLLLLSSEARPVLFEGPASPGAGAESFEQCRDTIIARTKGLSILTHDV : . .. : : : :. ..:.: : . :. : .... .: :. . mKIAA0 CTQ-QAPGQKECDNALRELETVKGMLENPNEPVSDLSYFD-CIESVMENSKVLGESMAGI 270 280 290 300 310 320 120 130 140 150 160 170 mKIAA4 QSQLNMGRFGEAGDSLVELGDLVVSLTECSAHAAYLAAVATPGAQPAQPGLVDRYRVTRC ... . : . :. . . . .::: .:.::::.... :..: .. :::: . .: mKIAA0 SQNAKTGDLPAFGECVGIASKALCGLTEAAAQAAYLVGISDPNSQAGHQGLVDPIQFARA 330 340 350 360 370 380 180 190 200 210 220 230 mKIAA4 RHEVEQGCAVLRATPLADMTPQLLLEVSQGLSRNLKFLTDACALASDKSRDRFSREQFKL . ....: : . : . .:. .: .. .... . : .:: .::.:. . ....: mKIAA0 NQAIQMACQNL-VDPGS--SPSQVLSAATIVAKHTSALCNACRIASSKTANPVAKRHFVQ 390 400 410 420 430 440 240 250 260 270 280 290 mKIAA4 GVKCMSTSASALLACVREVKAAPSELARSRCALFSGPLVQAVSALVGFATEPQFLGRAAA ..: ...:.. :. .. . . :: :..: . . ::..:: :..::..:.: . : mKIAA0 SAKEVANSTANLVKTIKALDGDFSEDNRNKCRIATTPLIEAVENLTAFASNPEFASIPAQ 450 460 470 480 490 500 300 310 320 330 340 350 mKIAA4 VSTEGKAVQTAILGGAMSVVSACVLLTQCLRDLAQHPDGSAKMSDHRERLRNSACAVSEG .:.::. .: :: .: ... . : . :.:: .: : : . . .::.. mKIAA0 ISSEGSQAQEPILVSAKTMLESSSYLIRTARSLAINPKDPPTWS----VLAGHSHTVSDS 510 520 530 540 550 360 370 380 mKIAA4 CTLLSQALRERSSPRTLPPVNSNSVN : ..:... mKIAA0 IKSLITSIRDKAPGQRECDYSIDGINRCIRDIEQASLAAVSQNLATRDDISVEALQEQLT 560 570 580 590 600 610 381 residues in 1 query sequences 1768636 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:04:05 2006 done: Mon Mar 27 11:04:06 2006 Scan time: 0.610 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]