FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4039.ptfa, 488 aa
 vs ./tmplib.26680 library

1768529 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9751+/-0.00465; mu= 15.3582+/- 0.311
 mean_var=112.2412+/-25.977, 0's: 0 Z-trim: 2  B-trim: 29 in 1/35
 Lambda= 0.1211

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0275  ( 380 res)   mbg09539                   ( 380) 1351  246 2.6e-66


>>mKIAA0275  ( 380 res)   mbg09539                        (380 aa)
 initn: 1082 init1: 363 opt: 1351  Z-score: 1282.8  bits: 246.4 E(): 2.6e-66
Smith-Waterman score: 1355;  47.044% identity (48.413% ungapped) in 389 aa overlap (96-483:1-379)

          70        80        90       100       110       120     
mKIAA4 AWCSQTLAAAAAVAVAGGRSDGGNFLDEKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTW
                                     ::..::::. .. .::.:::::::::...:
mKIAA0                               WLSSISQYSGKIKHWNRFRDEVEDDYIKSW
                                             10        20        30

         130       140       150       160       170       180     
mKIAA4 NPGKPFDQALDPAKDPCLKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRG
       . ..  :.::: .:::: :.::::::::..:  : :.:::...: : .:.      . .:
mKIAA0 EDNQQGDEALDTTKDPCQKVKCSRHKVCVAQGYQRAMCISRKKLEHRIKQ---PSLKLHG
               40        50        60        70        80          

         190       200       210       220       230       240     
mKIAA4 LPSSTCKPCPIAYASPVCGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMNI
         .:.:::: .:  . :::::::.::: :::: :::. .::....::: ::::...:   
mKIAA0 GKDSVCKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQSTAS
        90       100       110       120       130       140       

         250        260       270       280       290       300    
mKIAA4 GRNVK-RACSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSRFDTSILPICKDS
         . : ..:.  .. ....::::::. :.:...:: ....   :  . .: :.   ::::
mKIAA0 TTDSKSETCTGQDLADLGDRLRDWFQLLRENSKQNGSANSATNP--AGLDKSLGASCKDS
       150       160       170       180       190         200     

          310       320       330       340       350       360    
mKIAA4 LGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQ
       .::::..:::. ::.:::.::..: ::: : : . ::::::::::. .:. :::.:: :.
mKIAA0 IGWMFSKLDTSGDLFLDQTELAAINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFCFWRE
         210       220       230       240       250       260     

          370       380       390       400       410       420    
mKIAA4 QDPPCHTELSNIQKRQGIKKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVVGS
       . ::: .::   : ... ::  : .:: :::::::.  ::  : :.:::::. : :..:.
mKIAA0 K-PPCLAELERTQIQEAAKKKPGVFIPSCDEDGYYRKMQCDQSRGDCWCVDQLGLELTGT
          270       280       290       300       310       320    

          430       440       450       460       470       480    
mKIAA4 RINGVADCAIDFEISGDFASGDFREWTDDEGEEDDIMNDKDDIEDDDEDEGDDDDDGDVH
       :..:. ::     .::::.::    : :.: .: .  .  .. :... . :. :: : . 
mKIAA0 RMHGTPDCDDIVGFSGDFGSG--VGWEDEEEKETE--EAGEEAEEEEGEAGEADDGGYIW
          330       340         350         360       370       380

           
mKIAA4 DGYI




488 residues in 1 query   sequences
1768529 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:55 2006 done: Mon Mar 27 10:59:56 2006
 Scan time:  0.690 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]