FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0959.ptfa, 333 aa vs ./tmplib.26680 library 1768684 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.9442+/-0.00605; mu= -2.6202+/- 0.402 mean_var=187.9524+/-44.857, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.0936 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1308 ( 924 res) mbh02485 ( 924) 873 130 5.2e-31 mFLJ00153 ( 505 res) mpm10098 ( 505) 340 58 1.5e-09 >>mKIAA1308 ( 924 res) mbh02485 (924 aa) initn: 838 init1: 422 opt: 873 Z-score: 649.1 bits: 129.9 E(): 5.2e-31 Smith-Waterman score: 873; 46.407% identity (49.679% ungapped) in 334 aa overlap (1-322:593-916) 10 20 30 mKIAA0 DYIEGGLINFEKRRREFEVIAQIKLLQSAC ::. : ::::::::.::::::::::::::: mKIAA1 RQKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSAC 570 580 590 600 610 620 40 50 60 70 80 mKIAA0 NSYCMGPDQKFIQWFQRQQLLSEEESYALSCEIEAAADANTTSPKPRKS--MVKRLSLLF :.: ..:...: ::. .. ::: :::.::::.: ... ... . .:: .::: : mKIAA1 NNYSIAPEEHFGTWFRAMERLSEAESYTLSCELEPPSESASNTLRSKKSTAIVKRWSDRQ 630 640 650 660 670 680 90 100 110 120 130 140 mKIAA0 LGSDIIPGSTPTK----EQPKSAASGSSGESMDSVSVSSCESNHSEAEEGPVTPM-DTPD : . :. .. .: . . .::. :..:: : :. :..:: .. . ..:: mKIAA1 APSTELSTSSSAHSKSCDQLRCSPYLGSGDITDALSVHSAGSSSSDVEEINMSFVPESPD 690 700 710 720 730 740 150 160 170 180 190 mKIAA0 EPQKKL----SESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVS-VTSI .::. :.:: :.: : ....:. :. .:.:. : :::::: : : mKIAA1 GQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVSTTRT-------HKRSVSGVCSY 750 760 770 780 790 200 210 220 230 240 250 mKIAA0 TSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPA .:.. :.:::: : ::::.:.. .::::::::..:::::.:.::..::.::::. : mKIAA1 SSSL--PLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEP 800 810 820 830 840 850 260 270 280 290 300 310 mKIAA0 EEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRT :.:::::.::::..: ::..::::::::: .:.::::.:. . . .:.. .: :::: mKIAA1 EDYELVQIISEDHKLKIPENANVFYAMNSTANYDFILKKR-TFTKGAKVKHGASSTLPRM 860 870 880 890 900 910 320 330 mKIAA0 AKRGCWSNRHSKITL ..: mKIAA1 KQKGLRIAKGIF 920 >>mFLJ00153 ( 505 res) mpm10098 (505 aa) initn: 548 init1: 317 opt: 340 Z-score: 263.8 bits: 57.8 E(): 1.5e-09 Smith-Waterman score: 520; 38.194% identity (45.082% ungapped) in 288 aa overlap (1-285:259-505) 10 20 30 mKIAA0 DYIEGGLINFEKRRREFEVIAQIKLLQSAC : ..:.::::::::.:.:..:.:. ::. : mFLJ00 GSLPSKLPPGPVPYLGTFLTDLVMLDTALPDTLKGNLINFEKRRKEWEILARIQQLQQRC 230 240 250 260 270 280 40 50 60 70 80 mKIAA0 NSYCMGPDQKFIQWFQRQQLLSEEESYALSCEIEAAADANTTSPKPRK--SMVKRLSL-L . : ..: .. .. :. ::::.:: .: :: : . .::. :. :..:::: : mFLJ00 QRYSLSPRPPILAALRAQRQLSEEQSYRVSRVIEPPAASCPSSPRIRRRISLTKRLSAKL 290 300 310 320 330 340 90 100 110 120 130 140 mKIAA0 FLGSDIIPGSTPTKEQPKSAASGSSGESMDSVSVSSCESNHSEAEEGPVTPMDTPDEPQK .. ::..: .:.: .: ::: .: :. . : : : . : : mFLJ00 SREKNSSPGGSPG--DPSSPTS--------SVSPGSPPSSPRNREPPP--PGSPPASPGP 350 360 370 380 390 150 160 170 180 190 200 mKIAA0 KLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVSVTSITSTVLPPVY . : :. :. .:: :: .: :..: .: : :. mFLJ00 Q---SPSTKLSL-TMD---------------PP----GPW----PVTLTPSSSRV--PLL 400 410 420 210 220 230 240 250 260 mKIAA0 NQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVI .::. .. .::.:...:.::.:.::.:: :::.:.:.:::. :::. . :..:.: ::. mFLJ00 GQQTSEARVIRVSINNNHGNLYRSILLTCQDKAPSVVQRALEKHNVPQPWARDYQLFQVL 430 440 450 460 470 480 270 280 290 300 310 320 mKIAA0 SEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNR :.::.:::.::::::: mFLJ00 PGDRELLIPDGANVFYAM 490 500 333 residues in 1 query sequences 1768684 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:32:41 2006 done: Mon Mar 27 10:32:42 2006 Scan time: 0.560 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]