FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4066.ptfa, 112 aa
 vs ./tmplib.26680 library

1768905 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.1828+/-0.00344; mu= 15.3006+/- 0.232
 mean_var=50.9710+/-11.286, 0's: 0 Z-trim: 3  B-trim: 6 in 1/35
 Lambda= 0.1796

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0392  ( 593 res)   mbg05711                   ( 593)  400  111 4.5e-26


>>mKIAA0392  ( 593 res)   mbg05711                        (593 aa)
 initn: 427 init1: 199 opt: 400  Z-score: 560.4  bits: 111.3 E(): 4.5e-26
Smith-Waterman score: 404;  60.000% identity (65.347% ungapped) in 110 aa overlap (3-112:490-590)

                                           10        20        30  
mKIAA4                             YDYPNLQTAQLVYDREVQWTLGAILYKTRFLP
                                     : ::.::  :::.:::::::::::.:::::
mKIAA0 QAAKVMCRYQCFKSAWMFEVFHKGFSFPVTYKNLKTALQVYDKEVQWTLGAILYRTRFLP
     460       470       480       490       500       510         

             40        50        60        70        80        90  
mKIAA4 LRDLRQGQGGVRPAHGSWLRLSFVYNHYLFFACTLVVLLAIVLYLLRIHRIHRRQTRASA
       :::.::     : .:. :  .::::::::: .: :::::.:.:::::..:::::  :...
mKIAA0 LRDIRQEV--FRAGHAHWRGVSFVYNHYLFSGCFLVVLLSILLYLLRLRRIHRRAPRTGS
     520         530       540       550       560       570       

            100       110     
mKIAA4 PLDLLWIEQVVPMIGVQVGP   
           ::.:. .:    : ::   
mKIAA0 ----LWMEEGLPS---QKGPGPL
           580          590   




112 residues in 1 query   sequences
1768905 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:00:53 2006 done: Mon Mar 27 11:00:53 2006
 Scan time:  0.310 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]