# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mid11031.fasta.nr -Q ../query/mKIAA0039.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0039, 470 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7913657 sequences Expectation_n fit: rho(ln(x))= 6.1688+/-0.000202; mu= 7.0145+/- 0.011 mean_var=130.9160+/-24.685, 0's: 44 Z-trim: 58 B-trim: 75 in 1/64 Lambda= 0.112093 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148684474|gb|EDL16421.1| polymerase (DNA-direct ( 487) 3038 502.6 9e-140 gi|12034722|gb|AAG45967.1| unknown [Mus musculus] ( 491) 3026 500.7 3.5e-139 gi|26327601|dbj|BAC27544.1| unnamed protein produc ( 461) 2983 493.7 4.1e-137 gi|74207799|dbj|BAE40139.1| unnamed protein produc ( 461) 2974 492.2 1.1e-136 gi|17375622|sp|Q9EQ28.2|DPOD3_MOUSE RecName: Full= ( 462) 2971 491.8 1.6e-136 gi|149068814|gb|EDM18366.1| polymerase (DNA-direct ( 461) 2810 465.7 1.1e-128 gi|66911642|gb|AAH98010.1| Polymerase (DNA-directe ( 462) 2797 463.6 4.7e-128 gi|149068813|gb|EDM18365.1| polymerase (DNA-direct ( 453) 2732 453.1 6.7e-125 gi|114639346|ref|XP_508641.2| PREDICTED: polymeras ( 523) 2559 425.2 2e-116 gi|109107913|ref|XP_001082315.1| PREDICTED: polyme ( 523) 2544 422.8 1.1e-115 gi|73987968|ref|XP_534010.2| PREDICTED: similar to ( 464) 2528 420.1 5.8e-115 gi|17375506|sp|Q15054.2|DPOD3_HUMAN RecName: Full= ( 466) 2527 420.0 6.6e-115 gi|221046128|dbj|BAH14741.1| unnamed protein produ ( 466) 2518 418.5 1.8e-114 gi|194380284|dbj|BAG63909.1| unnamed protein produ ( 466) 2518 418.5 1.8e-114 gi|194673373|ref|XP_617789.4| PREDICTED: polymeras ( 548) 2515 418.1 2.8e-114 gi|124106280|sp|P84798.2|DPOD3_BOVIN RecName: Full ( 466) 2347 390.9 3.8e-106 gi|148684473|gb|EDL16420.1| polymerase (DNA-direct ( 355) 2313 385.2 1.4e-104 gi|73987966|ref|XP_860583.1| PREDICTED: similar to ( 423) 2278 379.7 8.1e-103 gi|80474538|gb|AAI08910.1| POLD3 protein [Homo sap ( 427) 2278 379.7 8.2e-103 gi|150834519|dbj|BAF69021.1| DNA-directed polymera ( 400) 2129 355.5 1.4e-95 gi|116283840|gb|AAH32636.1| POLD3 protein [Homo sa ( 384) 2057 343.9 4.4e-92 gi|80477913|gb|AAI08909.1| POLD3 protein [Homo sap ( 360) 1865 312.8 9.3e-83 gi|53132554|emb|CAG31915.1| hypothetical protein [ ( 463) 1745 293.5 7.7e-77 gi|74189622|dbj|BAE36810.1| unnamed protein produc ( 263) 1710 287.6 2.6e-75 gi|154757424|gb|AAI51728.1| POLD3 protein [Bos tau ( 299) 1628 274.4 2.8e-71 gi|224044127|ref|XP_002187642.1| PREDICTED: polyme ( 500) 1620 273.3 9.8e-71 gi|62740173|gb|AAH94211.1| POLD3 protein [Xenopus ( 474) 1490 252.3 2e-64 gi|50415212|gb|AAH77426.1| POLD3 protein [Xenopus ( 476) 1488 252.0 2.5e-64 gi|62201610|gb|AAH92454.1| POLD3 protein [Homo sap ( 267) 1484 251.0 2.7e-64 gi|34097964|dbj|BAC82197.1| DNA polymerase delta p ( 454) 1474 249.7 1.2e-63 gi|67967585|dbj|BAE00275.1| unnamed protein produc ( 253) 1280 218.0 2.2e-54 gi|112421218|ref|NP_001036234.1| polymerase (DNA-d ( 457) 1243 212.3 2.1e-52 gi|78070741|gb|AAI07843.1| Zgc:136471 protein [Dan ( 433) 1180 202.1 2.3e-49 gi|145207295|gb|AAH76031.2| Zgc:136471 protein [Da ( 432) 1178 201.8 2.9e-49 gi|47228117|emb|CAF97746.1| unnamed protein produc ( 462) 1152 197.6 5.6e-48 gi|209151883|gb|ACI33087.1| DNA polymerase subunit ( 449) 963 167.0 8.8e-39 gi|62079598|gb|AAX61145.1| DNA polymerase delta su ( 446) 932 162.0 2.8e-37 gi|218681782|pdb|3E0J|B Chain B, X-Ray Structure O ( 144) 916 158.9 7.8e-37 gi|18088276|gb|AAH20587.1| POLD3 protein [Homo sap ( 168) 870 151.5 1.5e-34 gi|62857999|ref|NP_001016556.1| polymerase (DNA-di ( 214) 831 145.3 1.4e-32 gi|94574330|gb|AAI16551.1| Zgc:136471 protein [Dan ( 395) 830 145.5 2.4e-32 gi|194386904|dbj|BAG59818.1| unnamed protein produ ( 150) 789 138.4 1.2e-30 gi|210124557|gb|EEA72253.1| hypothetical protein B ( 499) 598 108.0 5.5e-21 gi|198425191|ref|XP_002125821.1| PREDICTED: simila ( 469) 497 91.7 4.4e-16 gi|210093416|gb|EEA41619.1| hypothetical protein B ( 535) 483 89.5 2.3e-15 gi|156211080|gb|EDO32210.1| predicted protein [Nem ( 489) 480 89.0 3e-15 gi|163777864|gb|EDQ91480.1| predicted protein [Mon ( 526) 410 77.7 8.2e-12 gi|190589595|gb|EDV29617.1| hypothetical protein T ( 394) 400 75.9 2.1e-11 gi|72112491|ref|XP_791644.1| PREDICTED: similar to ( 490) 400 76.0 2.4e-11 gi|156541980|ref|XP_001599516.1| PREDICTED: hypoth ( 448) 398 75.7 2.8e-11 >>gi|148684474|gb|EDL16421.1| polymerase (DNA-directed), (487 aa) initn: 3038 init1: 3038 opt: 3038 Z-score: 2665.7 bits: 502.6 E(): 9e-140 Smith-Waterman score: 3038; 100.000% identity (100.000% similar) in 470 aa overlap (1-470:18-487) 10 20 30 40 mKIAA0 ERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHV ::::::::::::::::::::::::::::::::::::::::::: gi|148 RVSEAVSRRRELRLGRVERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHV 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA0 NQAKQMLYEYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NQAKQMLYEYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAV 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA0 TASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKY 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA0 EQSNLQAASEAQASELTTNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EQSNLQAASEAQASELTTNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAR 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA0 EVTSASSAGGKAPGKGSVMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EVTSASSAGGKAPGKGSVMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLA 250 260 270 280 290 300 290 300 310 320 330 340 mKIAA0 APPAQKKSSRKSEPGKVQQKEKSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 APPAQKKSSRKSEPGKVQQKEKSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEV 310 320 330 340 350 360 350 360 370 380 390 400 mKIAA0 FEDSPEMYEADSPSPPPVSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FEDSPEMYEADSPSPPPVSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCI 370 380 390 400 410 420 410 420 430 440 450 460 mKIAA0 VTEKVYESESCTDSEEELKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VTEKVYESESCTDSEEELKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSI 430 440 450 460 470 480 470 mKIAA0 TGFFQKK ::::::: gi|148 TGFFQKK >>gi|12034722|gb|AAG45967.1| unknown [Mus musculus] (491 aa) initn: 2002 init1: 2002 opt: 3026 Z-score: 2655.1 bits: 500.7 E(): 3.5e-139 Smith-Waterman score: 3026; 99.788% identity (99.788% similar) in 471 aa overlap (1-470:21-491) 10 20 30 40 mKIAA0 ERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLG :::::::::::::::::::::::::::::::::::::::: gi|120 CDPRVSEAVSRRRELRLGRVERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLG 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA0 VHVNQAKQMLYEYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 VHVNQAKQMLYEYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSK 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA0 LAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 LAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSS 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA0 RKYEQSNLQAASEAQASELTTNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 RKYEQSNLQAASEAQASELTTNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKP 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA0 EAREVTSASSAGGKAPGKGSVMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 EAREVTSASSAGGKAPGKGSVMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEP 250 260 270 280 290 300 290 300 310 320 330 mKIAA0 KLAAPPAQKKSSRKSEPGKVQQKEKS-RGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSS :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|120 KLAAPPAQKKSSRKSEPGKVQQKEKSSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSS 310 320 330 340 350 360 340 350 360 370 380 390 mKIAA0 EDEVFEDSPEMYEADSPSPPPVSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 EDEVFEDSPEMYEADSPSPPPVSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDE 370 380 390 400 410 420 400 410 420 430 440 450 mKIAA0 EGCIVTEKVYESESCTDSEEELKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 EGCIVTEKVYESESCTDSEEELKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANR 430 440 450 460 470 480 460 470 mKIAA0 QVSITGFFQKK ::::::::::: gi|120 QVSITGFFQKK 490 >>gi|26327601|dbj|BAC27544.1| unnamed protein product [M (461 aa) initn: 2983 init1: 2983 opt: 2983 Z-score: 2617.9 bits: 493.7 E(): 4.1e-137 Smith-Waterman score: 2983; 100.000% identity (100.000% similar) in 461 aa overlap (10-470:1-461) 10 20 30 40 50 60 mKIAA0 ERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 MAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 QQKEKSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 QQKEKSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPPP 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA0 VSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEEE 360 370 380 390 400 410 430 440 450 460 470 mKIAA0 LKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSITGFFQKK :::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSITGFFQKK 420 430 440 450 460 >>gi|74207799|dbj|BAE40139.1| unnamed protein product [M (461 aa) initn: 2974 init1: 2974 opt: 2974 Z-score: 2610.0 bits: 492.2 E(): 1.1e-136 Smith-Waterman score: 2974; 99.566% identity (100.000% similar) in 461 aa overlap (10-470:1-461) 10 20 30 40 50 60 mKIAA0 ERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE :::::::::::::::::::::::::::::::::::.::::::::::::::: gi|742 MAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNKAKQMLYEYVERKRKE 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 QQKEKSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 QQKEKSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPPP 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA0 VSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEEE 360 370 380 390 400 410 430 440 450 460 470 mKIAA0 LKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSITGFFQKK :::::::::::::::.:::::::::::::::::::::::::::::::::: gi|742 LKMKPASAHKPPAAAMKREPREERKGPKKGAAALGKANRQVSITGFFQKK 420 430 440 450 460 >>gi|17375622|sp|Q9EQ28.2|DPOD3_MOUSE RecName: Full=DNA (462 aa) initn: 1947 init1: 1947 opt: 2971 Z-score: 2607.4 bits: 491.8 E(): 1.6e-136 Smith-Waterman score: 2971; 99.784% identity (99.784% similar) in 462 aa overlap (10-470:1-462) 10 20 30 40 50 60 mKIAA0 ERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 MAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV 240 250 260 270 280 290 310 320 330 340 350 mKIAA0 QQKEKS-RGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPP :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 QQKEKSSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPP 300 310 320 330 340 350 360 370 380 390 400 410 mKIAA0 PVSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 PVSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEE 360 370 380 390 400 410 420 430 440 450 460 470 mKIAA0 ELKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSITGFFQKK ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 ELKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSITGFFQKK 420 430 440 450 460 >>gi|149068814|gb|EDM18366.1| polymerase (DNA-directed), (461 aa) initn: 2810 init1: 2810 opt: 2810 Z-score: 2466.7 bits: 465.7 E(): 1.1e-128 Smith-Waterman score: 2810; 94.143% identity (98.265% similar) in 461 aa overlap (10-470:1-461) 10 20 30 40 50 60 mKIAA0 ERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|149 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDRLEAVKSKLAVTASIHVYSIQKAMLKDS 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT ::::::::::::::::::::::::::::::::::::: ::::.::::::::::.:::::: gi|149 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSRKFEQSNLQAASETQASELT 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS ::::::::::::::::::::::::::::::::::::.:: :::::::::::::::::::. gi|149 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKDTKTEAREVTSASSAGGKAPGKGN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV :::::::::::.:::::::::::::::::::::::::.::::::::: ::::::::: :. gi|149 VMSNFFGKAAMSKLKVNLDSEQAVKEEKTVEQPPVSVAEPKLAAPPALKKSSRKSEPVKM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 QQKEKSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPPP :::::.::::::::::::::::.::::::::::::::::::::: :::::.:: :::::: gi|149 QQKEKNRGKRVDLSDEEAKETENLKKKRRRIKLPQSDSSEDEVFADSPEMFEAVSPSPPP 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA0 VSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEEE .::::::.::::::::::::::.::.::::::::::::::::.::::::::::::::::: gi|149 ASPPPDPVPKTEPPPVKRSSGENKRKRKRVLKSKTFVDEEGCMVTEKVYESESCTDSEEE 360 370 380 390 400 410 430 440 450 460 470 mKIAA0 LKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSITGFFQKK ::: :::..::::.::::::::::::::::::::::::::::::::::: gi|149 TKMKMASAQRPPAATVKREPREERKGPKKGAAALGKANRQVSITGFFQKK 420 430 440 450 460 >>gi|66911642|gb|AAH98010.1| Polymerase (DNA-directed), (462 aa) initn: 1852 init1: 1852 opt: 2797 Z-score: 2455.3 bits: 463.6 E(): 4.7e-128 Smith-Waterman score: 2797; 93.939% identity (98.052% similar) in 462 aa overlap (10-470:1-462) 10 20 30 40 50 60 mKIAA0 ERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|669 MAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|669 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDRLEAVKSKLAVTASIHVYSIQKAMLKDS 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT ::::::::::::::::::::::::::::::::::::: ::::.::::::::::.:::::: gi|669 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSRKFEQSNLQAASETQASELT 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS ::::::::::::::::::::::::::::::::::::.:: :::::::::::::::::::. gi|669 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKDTKTEAREVTSASSAGGKAPGKGN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV :::::::::::.:::::::::::::::::::::::::.::::::::: ::::::::: :. gi|669 VMSNFFGKAAMSKLKVNLDSEQAVKEEKTVEQPPVSVAEPKLAAPPALKKSSRKSEPVKM 240 250 260 270 280 290 310 320 330 340 350 mKIAA0 QQKEKS-RGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPP :::::. ::::::::::::::::.::::::::::::::::::::: :::::.:: ::::: gi|669 QQKEKKCRGKRVDLSDEEAKETENLKKKRRRIKLPQSDSSEDEVFADSPEMFEAVSPSPP 300 310 320 330 340 350 360 370 380 390 400 410 mKIAA0 PVSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEE :.::::::.::::::::::::::.::.::::::::::::::::.:::::::::::::::: gi|669 PASPPPDPVPKTEPPPVKRSSGENKRKRKRVLKSKTFVDEEGCMVTEKVYESESCTDSEE 360 370 380 390 400 410 420 430 440 450 460 470 mKIAA0 ELKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSITGFFQKK : ::: :::..::::.::::::::::::::::::::::::::::::::::: gi|669 ETKMKMASAQRPPAATVKREPREERKGPKKGAAALGKANRQVSITGFFQKK 420 430 440 450 460 >>gi|149068813|gb|EDM18365.1| polymerase (DNA-directed), (453 aa) initn: 2507 init1: 2507 opt: 2732 Z-score: 2398.6 bits: 453.1 E(): 6.7e-125 Smith-Waterman score: 2732; 92.408% identity (96.529% similar) in 461 aa overlap (10-470:1-453) 10 20 30 40 50 60 mKIAA0 ERGARSRTTMAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKE ::::::::::::::::::::::::::::::::::::::: :::: gi|149 MAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQ--------KRKE 10 20 30 40 70 80 90 100 110 120 mKIAA0 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDS ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|149 NSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDRLEAVKSKLAVTASIHVYSIQKAMLKDS 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESPSSRKYEQSNLQAASEAQASELT ::::::::::::::::::::::::::::::::::::: ::::.::::::::::.:::::: gi|149 GPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSRKFEQSNLQAASETQASELT 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGS ::::::::::::::::::::::::::::::::::::.:: :::::::::::::::::::. gi|149 TNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKDTKTEAREVTSASSAGGKAPGKGN 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 VMSNFFGKAAMNKLKVNLDSEQAVKEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKV :::::::::::.:::::::::::::::::::::::::.::::::::: ::::::::: :. gi|149 VMSNFFGKAAMSKLKVNLDSEQAVKEEKTVEQPPVSVAEPKLAAPPALKKSSRKSEPVKM 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 QQKEKSRGKRVDLSDEEAKETEHLKKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPPP :::::.::::::::::::::::.::::::::::::::::::::: :::::.:: :::::: gi|149 QQKEKNRGKRVDLSDEEAKETENLKKKRRRIKLPQSDSSEDEVFADSPEMFEAVSPSPPP 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 VSPPPDPMPKTEPPPVKRSSGETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEEE .::::::.::::::::::::::.::.::::::::::::::::.::::::::::::::::: gi|149 ASPPPDPVPKTEPPPVKRSSGENKRKRKRVLKSKTFVDEEGCMVTEKVYESESCTDSEEE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 LKMKPASAHKPPAAAVKREPREERKGPKKGAAALGKANRQVSITGFFQKK ::: :::..::::.::::::::::::::::::::::::::::::::::: gi|149 TKMKMASAQRPPAATVKREPREERKGPKKGAAALGKANRQVSITGFFQKK 410 420 430 440 450 >>gi|114639346|ref|XP_508641.2| PREDICTED: polymerase (D (523 aa) initn: 2487 init1: 971 opt: 2559 Z-score: 2246.6 bits: 425.2 E(): 2e-116 Smith-Waterman score: 2559; 84.342% identity (93.737% similar) in 479 aa overlap (1-470:45-523) 10 20 mKIAA0 ERGARSRT----TMAEQLYLENIDEFVTDQ :::.:. . :::.:::::::::::::: gi|114 VVRRLRCRGNDPGPGREQRRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEFVTDQ 20 30 40 50 60 70 30 40 50 60 70 80 mKIAA0 NKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKV :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|114 NKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKV 80 90 100 110 120 130 90 100 110 120 130 140 mKIAA0 AVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQC 140 150 160 170 180 190 150 160 170 180 190 200 mKIAA0 AAAVPRAPAESPSS-RKYEQSNLQAASEAQAS-ELTTNGHGPPASKQASQQPKGIMGMLI ::::::::::: :: .:.:::.:. .::.::. ::::::::::::::.::::::::::. gi|114 AAAVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFA 200 210 220 230 240 250 210 220 230 240 250 260 mKIAA0 SKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGSVMSNFFGKAAMNKLKVNLDSEQAV ::::.:::.:::::: ::.:::.:::::.::::::..::::::::::::::::::::::: gi|114 SKAAAKTQETNKETKTEAKEVTNASSAGNKAPGKGNMMSNFFGKAAMNKLKVNLDSEQAV 260 270 280 290 300 310 270 280 290 300 310 320 mKIAA0 KEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKVQQKEKSRGKRVDLSDEEAKETEHL :::: :::: :::::::::.: . ::::.:.:: :: ::::.::::: :::.:.::::.. gi|114 KEEKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENM 320 330 340 350 360 370 330 340 350 360 370 380 mKIAA0 KKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSP-PPVSPPPDPMPKTEP-PP-VKRSSG .:::::::::.::::::::: ::: :::.:::: :: ::: .:.::::: :: :: ::: gi|114 RKKRRRIKLPESDSSEDEVFSDSPGAYEAESPSPLPPPSPPLEPVPKTEPEPPSVKSSSG 380 390 400 410 420 430 390 400 410 420 430 440 mKIAA0 ETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEEELKMKPASAHKPPAAAVKREPR :.::.:::::::::.:: ::::::::::::::::::::::::: .:.:.::: .::.::: gi|114 ENKRKRKRVLKSKTYVDGEGCIVTEKVYESESCTDSEEELKMKTSSVHRPPAMTVKKEPR 440 450 460 470 480 490 450 460 470 mKIAA0 EERKGPKKGAAALGKANRQVSITGFFQKK :::::::::.:::::::::::::::::.: gi|114 EERKGPKKGTAALGKANRQVSITGFFQRK 500 510 520 >>gi|109107913|ref|XP_001082315.1| PREDICTED: polymerase (523 aa) initn: 2591 init1: 982 opt: 2544 Z-score: 2233.5 bits: 422.8 E(): 1.1e-115 Smith-Waterman score: 2544; 83.925% identity (93.528% similar) in 479 aa overlap (1-470:45-523) 10 20 mKIAA0 ERGARSRT----TMAEQLYLENIDEFVTDQ ::::.. . :::.:::::::::::::: gi|109 VVRRFRCRGNDPGPGREQRRFPPAGAVSVVERGAKGGSQRCRTMADQLYLENIDEFVTDQ 20 30 40 50 60 70 30 40 50 60 70 80 mKIAA0 NKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKV :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|109 NKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKV 80 90 100 110 120 130 90 100 110 120 130 140 mKIAA0 AVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQC 140 150 160 170 180 190 150 160 170 180 190 200 mKIAA0 AAAVPRAPAESPSS-RKYEQSNLQAASEAQAS-ELTTNGHGPPASKQASQQPKGIMGMLI ::::::.:::: :: .:.:::.:. .::.::. ::::::::::::::.::::::::::. gi|109 AAAVPRSPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFA 200 210 220 230 240 250 210 220 230 240 250 260 mKIAA0 SKAATKTQDTNKETKPEAREVTSASSAGGKAPGKGSVMSNFFGKAAMNKLKVNLDSEQAV ::::.:::.::::.: ::.:::.:::::.::::::..::::::::::::::::::::::: gi|109 SKAAAKTQETNKEAKTEAKEVTNASSAGNKAPGKGNMMSNFFGKAAMNKLKVNLDSEQAV 260 270 280 290 300 310 270 280 290 300 310 320 mKIAA0 KEEKTVEQPPVSVTEPKLAAPPAQKKSSRKSEPGKVQQKEKSRGKRVDLSDEEAKETEHL :::: :::: ::::::::::: . ::::.:.:: :: ::::.::::: :::.:.::::.. gi|109 KEEKIVEQPTVSVTEPKLAAPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENM 320 330 340 350 360 370 330 340 350 360 370 380 mKIAA0 KKKRRRIKLPQSDSSEDEVFEDSPEMYEADSPSPPPV-SPPPDPMPKTEP-PP-VKRSSG ::::::::::.::::::::: ::: :::.:: ::: ::: .:.::::: :: :: ::: gi|109 KKKRRRIKLPESDSSEDEVFPDSPGAYEAESPPPPPPPSPPLEPVPKTEPEPPSVKSSSG 380 390 400 410 420 430 390 400 410 420 430 440 mKIAA0 ETKRRRKRVLKSKTFVDEEGCIVTEKVYESESCTDSEEELKMKPASAHKPPAAAVKREPR :.::.:::::::::.:::::::::::::::::::::::::::: .:.:.::: .::.::. gi|109 ENKRKRKRVLKSKTYVDEEGCIVTEKVYESESCTDSEEELKMKTSSVHRPPAMTVKKEPK 440 450 460 470 480 490 450 460 470 mKIAA0 EERKGPKKGAAALGKANRQVSITGFFQKK ::::: :::.:::::::::::::::::.: gi|109 EERKGLKKGTAALGKANRQVSITGFFQRK 500 510 520 470 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 14:39:33 2009 done: Thu Mar 12 14:46:25 2009 Total Scan time: 926.080 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]