FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1926.ptfa, 400 aa
 vs ./tmplib.26680 library

1768617 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.7168+/-0.00449; mu= 21.7857+/- 0.301
 mean_var=103.8027+/-23.975, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1259

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00344  ( 1032 res)   msh20362                  (1032)  202   48 4.4e-06
mKIAA0246  ( 1789 res)   mpm11210                  (1789)  185   45 4.8e-05


>>mFLJ00344  ( 1032 res)   msh20362                       (1032 aa)
 initn: 173 init1: 173 opt: 202  Z-score: 201.6  bits: 47.5 E(): 4.4e-06
Smith-Waterman score: 236;  27.907% identity (32.967% ungapped) in 215 aa overlap (59-265:581-770)

       30        40        50        60        70        80        
mKIAA1 GAQRGRKKVVHVLEGESGSVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWT
                                     :..:  .   :.  :..   ::. ..    
mFLJ00 NLNYEGDGITCTVVDFCKQNNGGCAKVAKCSQKGTQVSCSCQKGYKG--DGHSCTE----
              560       570       580       590         600        

       90       100           110       120       130       140    
mKIAA1 KVVDPLAFADVFVALG-PQH---RAFGPYRGRAELQNDGPGDASLVLRNVTLQDYGRYEC
         .:: : .   :  :  .:   :  :: . . : ..   ::.    :.   ..    .:
mFLJ00 --IDPCANG---VNGGCHEHATCRMTGPGKQKCECKSHYVGDG----RDCEPEQLPLDRC
            610          620       630       640           650     

           150       160        170         180       190       200
mKIAA1 EVTN-ELEDDVGMVKLDLEGV-VFPYHPRG--GRYKMTFVEAQRACAEQDGILASAEQLH
          : . . :.. : : .. . :  .: :.  :.::.:: .:..:::.. . .:. .:: 
mFLJ00 LQDNGQCHPDANCVDLHFQDTTVGVFHLRSPLGQYKLTFDKAKEACAKEAASIATYNQLS
         660       670       680       690       700       710     

              210       220       230       240       250       260
mKIAA1 AAWRDGLDWCNAGWLRDGSVQYPVSHAREPCGGTGSTGAGGGTNGGVRNYGYRHNAEERY
        : .     :.::::..: : ::. .: . :..            :. .:: : :  : .
mFLJ00 YAQKAKYHLCSAGWLESGRVAYPTIYASKKCANIV----------GIVDYGTRTNKSEMW
         720       730       740       750                 760     

              270       280       290       300       310       320
mKIAA1 DAFCFTSNLPGRVFFLKPLRPVALAGAVRACAARGATVAKVGQLFAAWKLQLLDRCTAGW
       :.::.                                                       
mFLJ00 DVFCYRMKDVNCTCKAGYVGDGFSCNGNLLQVLMSFPSLTNFLTEVLVFSRSSAQGRAFL
         770       780       790       800       810       820     

>>mKIAA0246  ( 1789 res)   mpm11210                       (1789 aa)
 initn: 253 init1: 183 opt: 185  Z-score: 182.9  bits: 44.9 E(): 4.8e-05
Smith-Waterman score: 224;  40.000% identity (43.564% ungapped) in 110 aa overlap (261-363:1412-1519)

              240       250       260           270       280      
mKIAA1 CGGTGSTGAGGGTNGGVRNYGYRHNAEERYDAFC----FTSNLPGRVFFLKPLR-PVAL-
                                     ::.:    :  .  : :: ..    : .: 
mKIAA0 VGYVGDGLQCLEELEPPVDRCLGGSSPCHTDALCTDLHFQEKQAG-VFHIQATSGPYGLT
            1390      1400      1410      1420       1430      1440

           290       300       310       320       330       340   
mKIAA1 -AGAVRACAARGATVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRTRCGGPRPG
        . : .:: ..::..:.. :: :: .: .   : .::::.::: .:.:.: . ::. : :
mKIAA0 FSEAKEACEGQGAVLASLPQLSAAQQLGF-HVCFVGWLANGSAAHPVVTPAADCGNNRVG
             1450      1460       1470      1480      1490         

           350       360       370       380       390       400   
mKIAA1 VRSLGFPDASRRLFGVYCYRAPGAPDPAPGGWGWGWAGGGGWAGGSRDPAAWTPLRV   
       : :::      .:. .::::.                                       
mKIAA0 VVSLGVRKNLSELWDAYCYRVQDVACQCRAGFVGDGISTCNGKLLDVLAATANFSTFYGM
    1500      1510      1520      1530      1540      1550         




400 residues in 1 query   sequences
1768617 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:56:00 2006 done: Mon Mar 27 10:56:01 2006
 Scan time:  0.610 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]