FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4193.ptfa, 703 aa vs ./tmplib.26680 library 1768314 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.4467+/-0.00509; mu= 13.0778+/- 0.341 mean_var=116.6909+/-27.102, 0's: 0 Z-trim: 6 B-trim: 43 in 1/35 Lambda= 0.1187 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1341 ( 506 res) mpj01106 ( 506) 895 165 2.3e-41 mKIAA0156 ( 968 res) mph01928 ( 968) 212 48 5.7e-06 mKIAA0689 ( 643 res) mfj03025 ( 643) 197 45 2.6e-05 >>mKIAA1341 ( 506 res) mpj01106 (506 aa) initn: 865 init1: 502 opt: 895 Z-score: 835.0 bits: 164.5 E(): 2.3e-41 Smith-Waterman score: 1337; 48.898% identity (58.937% ungapped) in 499 aa overlap (2-424:15-504) 10 20 30 40 mKIAA4 RARSLTQSPDAEKMAAGVEAAAEVAATEPKMEEESGAPCVPSGNGAP ::. . : . ::: ... . : ::. . . : : : ..: mKIAA1 RHCSARSPHRGRGGARGGMADADKSEAAAGDDGSQQQPA-EPRRDTHPGEPEKPPRSSAN 10 20 30 40 50 50 60 70 80 90 mKIAA4 GPKGEERPTQNEKR---KEKNI-KRGGNRFEPYSNPT----------KRYRAFITNIPFD : : :. . .:.. :::. .. .:::.:::. .: :.::.:::.: mKIAA1 GVKMENDESVKEEKSDLKEKSTGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYD 60 70 80 90 100 110 100 110 120 130 140 150 mKIAA4 VKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRP .:::..:::..:::::::::::. :::::::::.::::: :: .::: :..::..::::: mKIAA1 MKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRP 120 130 140 150 160 170 160 170 mKIAA4 LKVKEDPDGEHARRAMQK---------------------------------------AGR :..:::::::.::::.:. ::: mKIAA1 LNIKEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGR 180 190 200 210 220 230 180 190 200 210 220 230 mKIAA4 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAI ::::.::::::.::::::::::::.::.: :::: :::::::::.: :::::.::::::: mKIAA1 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI 240 250 260 270 280 290 240 250 260 270 280 290 mKIAA4 SMFNGQLLFDRPMHVKMDERALPKGDFFPPE-RPQQLPHGLGGIGMGLGPGGQPIDANHL ::::::.:::::::::::....:. :. . . .:::.::::::::::::::::.:..: mKIAA1 SMFNGQFLFDRPMHVKMDDKSVPHEDYRSHDSKTSQLPRGLGGIGMGLGPGGQPISASQL 300 310 320 330 340 350 300 310 320 330 340 mKIAA4 S-KGIGMGNLGPAGMGMEGIGFG-INKIGGMEGPFGG--GMENMGRFGSGMNMGRINEIL . :. ::::::.::::.: ::: .:.::: : ::: .:..:. ::. .::..:. mKIAA1 NITGV-MGNLGPSGMGMDGPGFGGVNRIGGGVG-FGGLEAMNSMAGFGG---VGRMGELY 360 370 380 390 400 410 350 360 370 380 390 mKIAA4 SNALK--------RGEIIAKQGGGGA----GGSVPGIER----MGPGIDRISGAGMERMG .:. ::.: ..: : . :::. :. :: :.::.:.. ..::: mKIAA1 RGAMTSSMERDFGRGDIGLSRGFGDSFGRLGGSMSGMSTVTGGMGMGLDRMSSS-FDRMG 420 430 440 450 460 470 400 410 420 430 440 450 mKIAA4 AGLGHGMDRVGSEIERMGLVMDRMGS--VERMGSSIERMGPLGLDHMASSIERMGQTMER :.: ..: . ...: :.. ::: .:.: mKIAA1 PGIGAILER-SIDVDR-GFLSGPMGSGMRDRLGRN 480 490 500 460 470 480 490 500 510 mKIAA4 IGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMDRMVPTGMG >>mKIAA0156 ( 968 res) mph01928 (968 aa) initn: 188 init1: 73 opt: 212 Z-score: 199.5 bits: 47.9 E(): 5.7e-06 Smith-Waterman score: 220; 23.711% identity (27.165% ungapped) in 291 aa overlap (7-278:643-915) 10 20 30 mKIAA4 RARSLTQSPDAEKMAAGVEAAAEVAATEPKMEEESG ..:. .. . . :..:..: : : : . mKIAA0 KALKKKKKTRGADKRREDEDEENEWGEEEEEQPSKRRRTENSLASGEASAM--KEETELS 620 630 640 650 660 670 40 50 60 70 80 90 mKIAA4 APCVPSGNGAPGPKGEERPTQNEKRKEKNIKRGGNRFEPYSNPTKRYRAFITNIPFDVKW . :. : :. ..:.: ..:: . :. . .:..:.:.... mKIAA0 GKCLTIDVGPPS---------KQKEKAASLKRDMPKVAHDSSKDS-VTVFVSNLPYSIEE 680 690 700 710 720 100 110 120 130 140 150 mKIAA4 Q--SLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPL .:. : : :::. .. ... .: :: ::: :.: ..: : :... . :::. mKIAA0 PEVKLRPLF-EVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALE-LDRKIVEGRPM 730 740 750 760 770 160 170 180 190 200 mKIAA4 KV------KEDPDGEHARRAMQKAG--RLGSTVFVAN-LDYKVGWKKLKEVFSMAGVVVR : ...:: . . : : :.: . :. : .. ..:... . :.: mKIAA0 FVSPCVDKSKNPD---FKVCFLKKGVFRVGCPIGSAQGLPFSCTKEELEDICKAHGTVKD 780 790 800 810 820 830 210 220 230 240 250 260 mKIAA4 ADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD---ERALPKGDFF .. .. :: .:.. : .:. .: ::. ..:. . . ..: .. .: .:. mKIAA0 LRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIRENVIKVAISNPPQRKVPEKPEV 840 850 860 870 880 890 270 280 290 300 310 mKIAA4 ---P--PERPQQLPHGLGGIGMGLGPGGQPIDANHLSKGIGMGNLGPAGMGMEGIGFGIN : : :.:. .: : : mKIAA0 RTAPGAPMLPRQM-YGARGKGRTQLSLLPRALQRQGAAPQAENGPAPGPAVAPSVATEAP 900 910 920 930 940 950 >>mKIAA0689 ( 643 res) mfj03025 (643 aa) initn: 220 init1: 115 opt: 197 Z-score: 187.7 bits: 45.1 E(): 2.6e-05 Smith-Waterman score: 289; 25.874% identity (31.624% ungapped) in 572 aa overlap (86-620:30-534) 60 70 80 90 100 110 mKIAA4 TQNEKRKEKNIKRGGNRFEPYSNPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVEL :. :::... ..:::. .: :: :. .: mKIAA0 NSISAVLSAAIMSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE-VGSVVSFRL 10 20 30 40 50 120 130 140 150 160 170 mKIAA4 LMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGR ..: : :: .: . :.. .:. .: . :: . .::: :.: :. ... .. mKIAA0 VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV----DNAASEKNKEELKS 60 70 80 90 100 110 180 190 200 210 220 230 mKIAA4 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAI :: .. . . : : . : . .. .:... . :: .: .. . mKIAA0 LGPAAPIIDSPY--------------GDPI--DPEDAPESITRAVASLPPEQMFELMKQM 120 130 140 150 240 250 260 270 280 mKIAA4 SMF--NGQ-----LLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPG-GQ .. :.. .:.. :. . .: .. :: .. : . : :: .: mKIAA0 KLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHV-TPLIPGKSQ 160 170 180 190 200 210 290 300 310 320 330 340 mKIAA4 PIDANHLSKGIGMGNLGPAGMGMEGIGF------GINKIGGMEGPFGGGMENMGRFGSGM :.. : : :. ::.: : : : : : . ....: . ... : mKIAA0 PVS------GPGPGGPGPSGPGGPGPGPAPGLCPGPNVMLNQQNPPAPQPQHLPR----R 220 230 240 250 260 350 360 370 380 390 mKIAA4 NMGRINEILSNALKRGEIIAKQGGGGAGGSVPG-IERMGPGIDRISGAGMERMGAGLGHG . : ...... ::: : : .:. . ::: .:: . ..: mKIAA0 PVKDIPPLMQTSI--------QGGIPAPGPIPAAVPGPGPGSLTPGGAMQPQVG------ 270 280 290 300 310 400 410 420 430 440 450 mKIAA4 MDRVGS-EIERMGL-VMDRMGSVERMGSSIERMGPLGLDHMASSIERMGQTMERIGS--- : :: .:: . . : . : . : :: : . : : . : mKIAA0 MPVVGPVPLERGQMQISDPRPPMPRGPMPSGGIPPRGLLGDAPNDPRGGTLLSVTGEVEP 320 330 340 350 360 370 460 470 480 490 500 mKIAA4 ----GVERMGAGMGFGLE-RMAAPIDRVGQTIE---RMGSGVERMGPAIERMGLSMDRMV : ..: : : . : : : : . :: : : :: :.. :: :: mKIAA0 RGYMGPPHQGPPMHHGHDNRGPASHDMRGGPLAADPRMLIGEPR-GPMIDQRGLPMD--- 380 390 400 410 420 510 520 530 540 550 560 mKIAA4 PTGMGASLERMGPVMDRMATGLER--MGANNLERMGLER-MGANSLERMGLERMGANSLE : :. : . :.: : .. :: :.:: : . ..: : : : .:: mKIAA0 --GRGG----------RESRGMETRPMETEVLEPRGMERRMETCAMETRG---MDARGLE 430 440 450 460 470 570 580 590 600 610 mKIAA4 RMGP---AMGPALGAGIERMGLAMGGAGGASFDRAIE--MERGNFGGSFAGSFGGAGGHA :: . :: : ::. : :::: . : . :: ::.. :. : :: mKIAA0 MRGPGPSSRGPMTG-GIQGPGPINMGAGGPQGPRQVPNIAGVGNPGGTMQGA-GIQGGGM 480 490 500 510 520 530 620 630 640 650 660 670 mKIAA4 PGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVA :. mKIAA0 QGAGMQGGGMQGAGMQGGGMQGAGMQAGMQGASMQGGMQGAGMQGASKQGGGQPSSFSPG 540 550 560 570 580 590 703 residues in 1 query sequences 1768314 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:04:38 2006 done: Mon Mar 27 11:04:39 2006 Scan time: 0.840 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]