Comparison of KIAA cDNA sequences between mouse and human (KIAA0048)
<<Original sequence data>>
mouse mKIAA0048 (mid07066) length: 3004 bp, CDS: 327 - 1874
human KIAA0048 (ha01311) length: 3288 bp, CDS: 272 - 2155
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 69 - 604 281 47 14.3
CDS: 605 - 2155 1377 172 11.1
3'UTR: 2156 - 3345 898 200 18.2
amino acid
CDS: 605 - 2155 482 35 6.8
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
mid07066 1 .................................................. 1
ha01311 1 GCTGTATTGAGTTGGTATTCTGGATGATACAATTTTTAGGGCTAGAAAGT 50
51 ----+----*----+----*----+----*----+----*----+----* 100
mid07066 1 ..................CGGAGGCGGCGGAGGCCA.............. 18
| |||| || ||| |
ha01311 51 TTAGAGTGTTGGCTGGCTCACAGGCTGCAAAGGAAATAATGGTGGAGTCC 100
101 ----+----*----+----*----+----*----+----*----+----* 150
mid07066 19 .................................................. 19
ha01311 101 AGACCACAGCAGTAATTTCAATTACTAACACAAAGAAACCCATTGTCTGC 150
151 ----+----*----+----*----+----*----+----*----+----* 200
mid07066 19 .................................................. 19
ha01311 151 AATAATGAATATAACTGCAGTGTCTTGTTTTGTTTTAAATTCTTGTGTGC 200
201 ----+----*----+----*----+----*----+----*----+----* 250
mid07066 19 .....................................GGGAGGAAGATGT 31
||| || |||||
ha01311 201 GATGAAGGGGGCGAATCTATCAGACAACCTATCAATTGGGCTGATGATGT 250
251 ----+----*----+----*----+----*----+----*----+----* 300
mid07066 32 C................................................. 32
|
ha01311 251 CAGTGTTCCAGTGGCTTCTAACAGGCGTTAATACCTGTTGGAAATGGATT 300
Q A L I P V G N G L
301 ----+----*----+----*----+----*----+----*----+----* 350
V M S D P Q M S M A A T A A
mid07066 33 ..........GTAATGAGCGATCCACAGATGAGCATGGCCGCCACTGCTG 72
| | || |||||||||| |||||||| ||||||||||
ha01311 301 ATCATTGGCTGGGACGATTGATCCACAGACCAGCATGGCTGCCACTGCTG 350
S L A G T I D P Q T S M A A T A A
351 ----+----*----+----*----+----*----+----*----+----* 400
V S P S D Y L Q P A A A T T Q D
mid07066 73 CTGTCAGTCCCAGTGACTACCTGCAGCCTGCTGCTGCTACTACCCAGGAC 122
|||| |||||||||||||||||||||||||| || | || |||||||||
ha01311 351 CTGTGAGTCCCAGTGACTACCTGCAGCCTGCCGCCTCCACCACCCAGGAC 400
V S P S D Y L Q P A A S T T Q D
401 ----+----*----+----*----+----*----+----*----+----* 450
S Q P S P L A L L A A T C S K I G
mid07066 123 TCCCAGCCATCTCCCTTGGCCCTGCTTGCTGCGACATGTAGCAAAATTGG 172
||||||||||||||||| |||||||||||||| |||||||||||||||||
ha01311 401 TCCCAGCCATCTCCCTTAGCCCTGCTTGCTGCAACATGTAGCAAAATTGG 450
S Q P S P L A L L A A T C S K I G
451 ----+----*----+----*----+----*----+----*----+----* 500
P P A V E A A V T P P A P P Q P T
mid07066 173 CCCCCCAGCTGTTGAAGCTGCAGTGACACCTCCTGCTCCCCCCCAGCCTA 222
||| ||||| ||||||||||| |||||||||||||||||||| ||||| |
ha01311 451 CCCTCCAGCAGTTGAAGCTGCTGTGACACCTCCTGCTCCCCCACAGCCCA 500
P P A V E A A V T P P A P P Q P T
501 ----+----*----+----*----+----*----+----*----+----* 550
P R K L V P I K P A P L P L S P
mid07066 223 CCCCAAGGAAACTGGTCCCTATCAAACCCGCTCCTCTCCCTCTCAGTCCC 272
| || ||||||| |||||||||||||| || |||||||||||||| |||
ha01311 501 CACCGCGGAAACTTGTCCCTATCAAACCTGCCCCTCTCCCTCTCAGCCCC 550
P R K L V P I K P A P L P L S P
551 ----+----*----+----*----+----*----+----*----+----* 600
C K N S F S I L S S K G N I L Q I
mid07066 273 TGCAAGAATAGCTTTAGCATCTTATCATCTAAAGGAAATATACTTCAGAT 322
|||||||||||||| | ||||| || || ||||||||||||||||||||
ha01311 551 GGCAAGAATAGCTTTGGAATCTTGTCCTCCAAAGGAAATATACTTCAGAT 600
G K N S F G I L S S K G N I L Q I
601 ----+----*----+----*----+----*----+----*----+----* 650
* G S Q L S T S Y P G G Q F V F A
mid07066 323 TTAGGGCTCCCAGCTGAGTACCTCCTACCCTGGAGGGCAGTTTGTGTTTG 372
| |||| || || ||||| ||||||| |||||||||||| | ||||| |
ha01311 601 TCAGGGGTCACAACTGAGCGCCTCCTATCCTGGAGGGCAGCTGGTGTTCG 650
Q G S Q L S A S Y P G G Q L V F A
651 ----+----*----+----*----+----*----+----*----+----* 700
I Q N P T L I N K G S R S N A S
mid07066 373 CAATCCAGAACCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGT 422
| |||||||| |||||| ||||||||||||||| |||||||||||| | |
ha01311 651 CTATCCAGAATCCCACCATGATCAACAAAGGGACCCGATCAAATGCCAAT 700
I Q N P T M I N K G T R S N A N
701 ----+----*----+----*----+----*----+----*----+----* 750
I Q Y - V P Q I Q G N S S Q T I
mid07066 423 ATCCAGTACCA...AGTCCCTCAGATCCAAGGGAACAGTTCCCAGACCAT 469
||||||||||| ||||||||||| || | | || |||||| |||||
ha01311 701 ATCCAGTACCAGGCGGTCCCTCAGATTCAGGCAAGCAATTCCCAAACCAT 750
I Q Y Q A V P Q I Q A S N S Q T I
751 ----+----*----+----*----+----*----+----*----+----* 800
Q V Q P S L T N Q I Q V I P G T N
mid07066 470 CCAGGTGCAGCCCAGTCTCACCAACCAGATCCAGGTCATCCCAGGCACCA 519
||| || ||||||| ||||||||||||||||||| ||||||| |||||||
ha01311 751 CCAAGTACAGCCCAATCTCACCAACCAGATCCAGATCATCCCTGGCACCA 800
Q V Q P N L T N Q I Q I I P G T N
801 ----+----*----+----*----+----*----+----*----+----* 850
Q A I T T P S T S G H K P V P I
mid07066 520 ACCAAGCCATCACCACCCCGTCAACATCTGGTCATAAGCCTGTCCCCATC 569
|||||||||||| |||||| ||| | || |||| |||||||||||||||
ha01311 801 ACCAAGCCATCATCACCCCCTCACCGTCCAGTCACAAGCCTGTCCCCATC 850
Q A I I T P S P S S H K P V P I
851 ----+----*----+----*----+----*----+----*----+----* 900
K P A P V Q K S S T T T T P V Q S
mid07066 570 AAGCCAGCTCCTGTCCAGAAGTCAAGTACGACTACCACCCCTGTGCAGAG 619
|||||||| || |||||||||| |||||||| |||||||| ||||||||
ha01311 851 AAGCCAGCCCCCATCCAGAAGTCGAGTACGACCACCACCCCCGTGCAGAG 900
K P A P I Q K S S T T T T P V Q S
901 ----+----*----+----*----+----*----+----*----+----* 950
G A N V V K L T G G G S N M T L T
mid07066 620 CGGGGCCAACGTGGTGAAGCTGACAGGCGGGGGTAGCAACATGACGCTCA 669
||||||||| ||||||||| ||||||| ||||| |||| |||||||||
ha01311 901 CGGGGCCAATGTGGTGAAGTTGACAGGTGGGGGCGGCAATGTGACGCTCA 950
G A N V V K L T G G G G N V T L T
951 ----+----*----+----*----+----*----+----*----+----* 1000
L P L N N L V N T S D I G G P A
mid07066 670 CCCTGCCGCTCAACAACCTGGTGAACACCAGCGATATTGGGGGCCCTGCT 719
| ||||| |||||||||| |||||| |||| || | |||| |||| ||
ha01311 951 CTCTGCCCGTCAACAACCTCGTGAACGCCAGTGACACCGGGGCCCCTACT 1000
L P V N N L V N A S D T G A P T
1001 ----+----*----+----*----+----*----+----*----+----* 1050
Q L L T E S P P T P L S K T N K K
mid07066 720 CAGCTCCTCACTGAGAGCCCCCCCACCCCACTGTCTAAGACTAACAAGAA 769
|||||||||||||| |||||||| ||||||||||||||||||||||||||
ha01311 1001 CAGCTCCTCACTGAAAGCCCCCCAACCCCACTGTCTAAGACTAACAAGAA 1050
Q L L T E S P P T P L S K T N K K
1051 ----+----*----+----*----+----*----+----*----+----* 1100
A R K K S L P V S Q P S V A V A E
mid07066 770 AGCTAGGAAGAAGAGCCTCCCTGTGTCACAGCCATCCGTAGCTGTGGCTG 819
||| |||||||||||||| |||| || ||||| | || ||||||||||
ha01311 1051 AGCAAGGAAGAAGAGCCTTCCTGCCTCCCAGCCCCCTGTGGCTGTGGCTG 1100
A R K K S L P A S Q P P V A V A E
1101 ----+----*----+----*----+----*----+----*----+----* 1150
Q V E T V L I E T T A D N I I Q
mid07066 820 AGCAGGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAG 869
|||||||||||||||||||||| |||||||| || |||||||||||||||
ha01311 1101 AGCAGGTGGAGACGGTGCTGATCGAGACCACCGCGGACAACATCATCCAG 1150
Q V E T V L I E T T A D N I I Q
1151 ----+----*----+----*----+----*----+----*----+----* 1200
A G N N L L I V Q S P G G G Q P A
mid07066 870 GCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGC 919
|||||||| |||||||| || || ||||||||||| ||||||||||||||
ha01311 1151 GCAGGAAATAACCTGCTCATTGTTCAGAGCCCTGGTGGGGGCCAGCCAGC 1200
A G N N L L I V Q S P G G G Q P A
1201 ----+----*----+----*----+----*----+----*----+----* 1250
V V Q Q V Q V V P P K A E Q Q Q V
mid07066 920 TGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGG 969
|||||||||||| |||||||||||||| |||||||| |||||||||||||
ha01311 1201 TGTGGTCCAGCAGGTCCAGGTGGTGCCCCCCAAGGCCGAGCAGCAGCAGG 1250
V V Q Q V Q V V P P K A E Q Q Q V
1251 ----+----*----+----*----+----*----+----*----+----* 1300
V Q I P Q Q A L R V V Q A A S A
mid07066 970 TGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCC 1019
|||| ||||||||||||||||| |||||||||||||| || || ||||||
ha01311 1251 TGGTACAGATCCCCCAGCAGGCTCTGCGGGTGGTGCAGGCGGCATCTGCC 1300
V Q I P Q Q A L R V V Q A A S A
1301 ----+----*----+----*----+----*----+----*----+----* 1350
T L P T V P Q K P S Q N F Q I Q T
mid07066 1020 ACCCTCCCCACCGTCCCCCAGAAGCCCTCTCAGAACTTTCAGATCCAGAC 1069
||||||||||| || |||||||||||||| |||||||||||||||||| |
ha01311 1301 ACCCTCCCCACTGTACCCCAGAAGCCCTCCCAGAACTTTCAGATCCAGGC 1350
T L P T V P Q K P S Q N F Q I Q A
1351 ----+----*----+----*----+----*----+----*----+----* 1400
T E P T P T Q V Y I R T P S G E V
mid07066 1070 AACTGAACCAACACCAACCCAGGTTTATATCCGTACACCTTCTGGTGAGG 1119
| |||| || ||||| || ||||| || ||||| || ||||| |||||||
ha01311 1351 AGCTGAGCCGACACCTACTCAGGTCTACATCCGCACGCCTTCCGGTGAGG 1400
A E P T P T Q V Y I R T P S G E V
1401 ----+----*----+----*----+----*----+----*----+----* 1450
Q T V L V Q D S P P A T A A T T
mid07066 1120 TACAGACAGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACCACA 1169
| |||||||||||||||||||||||||||||||||||||||||| ||||
ha01311 1401 TGCAGACAGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAGCCACC 1450
Q T V L V Q D S P P A T A A A T
1451 ----+----*----+----*----+----*----+----*----+----* 1500
S T V T C N S P A L R A P H L S G
mid07066 1170 TCAACCGTCACCTGTAACAGCCCTGCACTCCGAGCTCCCCATCTGAGTGG 1219
|| | | |||||||| |||||||||| ||| |||||||||||||||||
ha01311 1451 TCTAACACCACCTGTAGCAGCCCTGCATCCCGTGCTCCCCATCTGAGTGG 1500
S N T T C S S P A S R A P H L S G
1501 ----+----*----+----*----+----*----+----*----+----* 1550
T S K K H S A A I L R K E R P L P
mid07066 1220 CACCAGCAAAAAACATTCAGCTGCCATTCTCCGAAAAGAGCGGCCCCTGC 1269
||||||||||| || |||||||| ||||||||||||||||| |||||||
ha01311 1501 GACCAGCAAAAAGCACTCAGCTGCAATTCTCCGAAAAGAGCGTCCCCTGC 1550
T S K K H S A A I L R K E R P L P
1551 ----+----*----+----*----+----*----+----*----+----* 1600
K I A P A G S I I S L N A A Q L
mid07066 1270 CAAAGATTGCACCTGCTGGGAGCATCATCAGCCTGAACGCCGCACAGCTG 1319
|||||||||| || || |||||||||||||||||||| || || ||| ||
ha01311 1551 CAAAGATTGCCCCAGCCGGGAGCATCATCAGCCTGAATGCAGCCCAGTTG 1600
K I A P A G S I I S L N A A Q L
1601 ----+----*----+----*----+----*----+----*----+----* 1650
A A A A Q A M Q T I N I N G V Q V
mid07066 1320 GCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGT 1369
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||
ha01311 1601 GCGGCAGCTGCCCAGGCAATGCAGACCATCAACATCAATGGTGTCCAGGT 1650
A A A A Q A M Q T I N I N G V Q V
1651 ----+----*----+----*----+----*----+----*----+----* 1700
Q G V P V T I T N T G G Q Q Q L T
mid07066 1370 CCAGGGTGTGCCTGTCACCATCACCAACACTGGCGGGCAGCAGCAGCTGA 1419
|||||| ||||||||||||||||||||||| |||||||||||||||||||
ha01311 1651 CCAGGGCGTGCCTGTCACCATCACCAACACAGGCGGGCAGCAGCAGCTGA 1700
Q G V P V T I T N T G G Q Q Q L T
1701 ----+----*----+----*----+----*----+----*----+----* 1750
V Q N V S G N N L T I S G L S P
mid07066 1420 CCGTGCAGAACGTTTCTGGAAACAACCTGACTATCAGTGGGCTGAGCCCC 1469
| |||||||| |||||||| ||||||||||| ||||||||||||||||||
ha01311 1701 CAGTGCAGAATGTTTCTGGGAACAACCTGACCATCAGTGGGCTGAGCCCC 1750
V Q N V S G N N L T I S G L S P
1751 ----+----*----+----*----+----*----+----*----+----* 1800
T Q I Q L Q M E Q A L A G E A Q P
mid07066 1470 ACCCAGATCCAGCTGCAGATGGAGCAGGCTCTAGCCGGAGAGGCCCAGCC 1519
||||||||||||||||| ||||| || || || ||||||||| |||||||
ha01311 1751 ACCCAGATCCAGCTGCAAATGGAACAAGCCCTGGCCGGAGAGACCCAGCC 1800
T Q I Q L Q M E Q A L A G E T Q P
1801 ----+----*----+----*----+----*----+----*----+----* 1850
G E K R R R M A C T C P N C K D G
mid07066 1520 TGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCAAGGATG 1569
|||||||| ||||| ||||||||||||||||||||||||||||||||||
ha01311 1801 CGGGGAGAAGCGGCGCCGCATGGCCTGCACGTGTCCCAACTGCAAGGATG 1850
G E K R R R M A C T C P N C K D G
1851 ----+----*----+----*----+----*----+----*----+----* 1900
E K R S G E Q G K K K H V C H I
mid07066 1570 GGGAGAAGAGGTCTGGGGAGCAGGGCAAGAAGAAGCACGTGTGCCACATC 1619
|||||||||||||||| ||||||||||||||||||||||| |||||||||
ha01311 1851 GGGAGAAGAGGTCTGGAGAGCAGGGCAAGAAGAAGCACGTTTGCCACATC 1900
E K R S G E Q G K K K H V C H I
1901 ----+----*----+----*----+----*----+----*----+----* 1950
P D C G K T F R K T S L L R A H V
mid07066 1620 CCGGACTGCGGGAAGACTTTCCGGAAGACATCCTTGCTCCGGGCCCACGT 1669
|| ||||| || ||||| ||||| ||||| |||||||| || ||||| ||
ha01311 1901 CCCGACTGTGGCAAGACGTTCCGTAAGACGTCCTTGCTGCGTGCCCATGT 1950
P D C G K T F R K T S L L R A H V
1951 ----+----*----+----*----+----*----+----*----+----* 2000
R L H T G E R P F V C N W F F C G
mid07066 1670 CCGCCTGCACACTGGCGAGCGGCCCTTTGTCTGCAACTGGTTCTTCTGTG 1719
|||||||||||||||||||||||||||||||||||||||||||||||||
ha01311 1951 GCGCCTGCACACTGGCGAGCGGCCCTTTGTCTGCAACTGGTTCTTCTGTG 2000
R L H T G E R P F V C N W F F C G
2001 ----+----*----+----*----+----*----+----*----+----* 2050
K R F T R S D E L Q R H A R T H
mid07066 1720 GAAAGAGATTCACTCGGAGCGATGAACTCCAGCGACATGCTCGAACCCAC 1769
| ||||| ||||| ||||| || || ||||| || |||||||| ||||||
ha01311 2001 GGAAGAGGTTCACACGGAGTGACGAGCTCCAACGGCATGCTCGCACCCAC 2050
K R F T R S D E L Q R H A R T H
2051 ----+----*----+----*----+----*----+----*----+----* 2100
T G D K R F E C A Q C Q K R F M R
mid07066 1770 ACAGGGGACAAGCGCTTTGAGTGTGCCCAATGTCAGAAGCGCTTCATGAG 1819
||||||||||| ||||| ||||| ||||| ||||||||||||||||||||
ha01311 2051 ACAGGGGACAAACGCTTCGAGTGCGCCCAGTGTCAGAAGCGCTTCATGAG 2100
T G D K R F E C A Q C Q K R F M R
2101 ----+----*----+----*----+----*----+----*----+----* 2150
S D H L T K H Y K T H L G T K G L
mid07066 1820 GAGTGACCACCTCACCAAGCATTACAAGACCCACCTAGGCACGAAGGGCT 1869
|||||||||||||||||||||||||||||||||||| | ||||||| ||
ha01311 2101 GAGTGACCACCTCACCAAGCATTACAAGACCCACCTGGTCACGAAGAACT 2150
S D H L T K H Y K T H L V T K N L
2151 ----+----*----+----*----+----*----+----*----+----* 2200
*
mid07066 1870 TGTAAGGCCAACTGAGGCAGGAGGCCCTGAAGATGGAACACCTCCCATCT 1919
|||||||||||||| ||| |||||||||||||||| | || | | | |
ha01311 2151 TGTAAGGCCAACTGCGGCGGGAGGCCCTGAAGATGCAGTCCCCCACCTGT 2200
*
2201 ----+----*----+----*----+----*----+----*----+----* 2250
mid07066 1920 GATTGGCCCTGGGTCCATGATGGACAGGTGCCC.ACGACTGCCCTGGG.C 1967
| | ||||||| || || |||| ||| |||| | ||||| |||| |
ha01311 2201 G.TCCTCCCTGGGCCCCTGGTGGAAAGGAGCCCTGTGGCTGCCTTGGGCC 2249
2251 ----+----*----+----*----+----*----+----*----+----* 2300
mid07066 1968 AGCCCTCA.CCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGAC 2016
||||||| |||||||||||||||| | |||||| ||| |||| |
ha01311 2250 TGCCCTCAGCCCCACTCCTGTTCTGCAAC..TGTCCCCACAGGAAGGGGC 2297
2301 ----+----*----+----*----+----*----+----*----+----* 2350
mid07066 2017 TCTGTT.CCTGTGTTCTCCTCCTTCCAAA.......GGCTCTGCC..... 2053
|||||| ||||| || ||||||||| || |||||||||
ha01311 2298 TCTGTTCCCTGTATTGTCCTCCTTCTGAAGCCCCTTGGCTCTGCCTTGGC 2347
2351 ----+----*----+----*----+----*----+----*----+----* 2400
mid07066 2054 ....CCTCTCACCGTGAGCTCCTGGCCTGCCCAGGCCATGGACACTGGCC 2099
|| |||||| ||||||| ||||||||||| | ||||||||||||
ha01311 2348 CCTTCCCCTCACCACGAGCTCCCGGCCTGCCCAGACTGTGGACACTGGCC 2397
2401 ----+----*----+----*----+----*----+----*----+----* 2450
mid07066 2100 ATGCCCAATGAGACGTTCTAACCCAGGACGCGTGGGGACCCTTATTTCCA 2149
|||||||||||||||||||| |||||||||||||| |||||||||||||
ha01311 2398 GTGCCCAATGAGACGTTCTAAACCAGGACGCGTGGGAACCCTTATTTCCA 2447
2451 ----+----*----+----*----+----*----+----*----+----* 2500
mid07066 2150 AAGGAAAAACATACATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCCATC 2199
|||||||||||| ||||||||||||||||||||||||||||||||| | |
ha01311 2448 AAGGAAAAACATGCATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCTACC 2497
2501 ----+----*----+----*----+----*----+----*----+----* 2550
mid07066 2200 CCC..ACCCCATCCCCTTCCTCAACACTGCCGGAGTCCCATTGTGCCATG 2247
||| ||| |||||| | |||||||||||||||| | | |||||||
ha01311 2498 CCCCACCCCGATCCCCGCTCCCAACACTGCCGGAGTCGCGTCATGCCATG 2547
2551 ----+----*----+----*----+----*----+----*----+----* 2600
mid07066 2248 CCCCCTCCCCCACCGTGCCTCCTTGTCCCCCTCAATTAAGTCCTCCTGGG 2297
||||||| | | | ||||| || ||| | ||
ha01311 2548 CCCCCTCTC...CTGCACCTCCCTGGCCCTGCC...............GG 2579
2601 ----+----*----+----*----+----*----+----*----+----* 2650
mid07066 2298 CCGCTAGGGACACCCAGGGGCCCTGTACCCAGCCTCCCACTGACACCCCC 2347
|| || |||| ||| ||||| || ||||| |
ha01311 2580 CCACTGTGGACGCCCTGGGGC..................TTGGCACCCAC 2611
2651 ----+----*----+----*----+----*----+----*----+----* 2700
mid07066 2348 CACCGGGGAGGTGGGAGGCTGCCTCCACTCCA.CTGCCCAGCCCTGCCAC 2396
| | || || | ||| ||||||||||| |||||||||| |||||
ha01311 2612 CTCTGGAGAAACTCGGGGCCACCTCCACTCCATGTGCCCAGCCCCGCCAC 2661
2701 ----+----*----+----*----+----*----+----*----+----* 2750
mid07066 2397 .GGCTCTCCTCCA.AACATTCCAACTTCCTATGAAAGGT.....CAGACG 2439
|||||||||| |||||||| || | | ||| || || |
ha01311 2662 AACCTCTCCTCCAGCACATTCCAGCTCTATTTAAAAAGTAAAGACACCCA 2711
2751 ----+----*----+----*----+----*----+----*----+----* 2800
mid07066 2440 CCGAGGACCTGCCCTCCCTCTTTTCTACGGAGAACGTTGCCTTATACTC. 2488
|||| | || || ||||||| |||||||||||||||||||||
ha01311 2712 CCGACTCCTGATCCCCCTCTTTTTCTATGGAGAACGTTGCCTTATACTCT 2761
2801 ----+----*----+----*----+----*----+----*----+----* 2850
mid07066 2489 ..ACTTCAGATGATG.ACACTGTGGAC.GTGTGTGCTTTAACCACATTTT 2534
||||||||||||| |||||||| || ||||||||||||| | ||||
ha01311 2762 CTACTTCAGATGATGAACACTGTGTACTGTGTGTGCTTTAAAGAAGTTTT 2811
2851 ----+----*----+----*----+----*----+----*----+----* 2900
mid07066 2535 ATTTAATTGCTCC...CTTCCTCTCTTTGCTAGACGCCTCCCCCTTGCTT 2581
||||||||||||| |||||| || ||| || | |||||| ||| |
ha01311 2812 ATTTAATTGCTCCCTTCTTCCTTTCCTTGTTATTCACCTCCCTGATGCCT 2861
2901 ----+----*----+----*----+----*----+----*----+----* 2950
mid07066 2582 GCATTCAGTTTAGGGTTTTGGGGGCAATGCTGAGCATAGGAGGGTCTTTT 2631
|| ||||||| |||| |||||||||||| |||||||| ||
ha01311 2862 GCTTTCAGTTGAGGG..TTGGGGGCAATGATGAGCATATGA......... 2900
2951 ----+----*----+----*----+----*----+----*----+----* 3000
mid07066 2632 TTTTTTTGCTATTTTTTTTCTCACTTTAACAATT..CTTTTCTAAATGAC 2679
|||||||||||| || ||||| ||||||||||||||
ha01311 2901 ............ATTTTTTCTCACTCTAGCAATTCCCTTTTCTAAATGAC 2938
3001 ----+----*----+----*----+----*----+----*----+----* 3050
mid07066 2680 A...CATTTCAACTCAAATCTGGACTCACCTGAGAACACCTTC.CATCCT 2725
| ||||| |||||||||||||| ||| | | | ||||| | ||||||
ha01311 2939 ACAGCATTTAAACTCAAATCTGGATTCAGATAACAGCACCTGCACATCCT 2988
3051 ----+----*----+----*----+----*----+----*----+----* 3100
mid07066 2726 G.ACCCCGCCACGCCCTCATCTCC.........CCCTGCCCAAGCTCCAC 2765
| ||| | | | | | | || || ||| |||||||||| ||
ha01311 2989 GCACCTCCTCCCTCTCCCTTCACCTCACCCCTGCCCGGCCCAAGCTCTAC 3038
3101 ----+----*----+----*----+----*----+----*----+----* 3150
mid07066 2766 .TGTGTACAGTGTATATTGTATAATAGACTATTGTGTCTAAGACATGTTT 2814
|||||||||||||||||||||||||||| |||||||||| ||||| ||
ha01311 3039 TTGTGTACAGTGTATATTGTATAATAGACAATTGTGTCTACTACATG.TT 3087
3151 ----+----*----+----*----+----*----+----*----+----* 3200
mid07066 2815 TAAAAACATATTGCTTGTTATTTTTGAGGCTTTTAAATTAAACAGAAATC 2864
|||||||| ||||||||||||||||||||||||||||||||||| |||||
ha01311 3088 TAAAAACACATTGCTTGTTATTTTTGAGGCTTTTAAATTAAACAAAAATC 3137
3201 ----+----*----+----*----+----*----+----*----+----* 3250
mid07066 2865 CAACTTTA.TTTTCGTTGTAACTGCTTGAGG.ATGTTTTATTAATTAAGT 2912
|||||||| |||| ||||||||||||||||| ||||||||| ||||||||
ha01311 3138 CAACTTTATTTTTAGTTGTAACTGCTTGAGGTATGTTTTATGAATTAAGT 3187
3251 ----+----*----+----*----+----*----+----*----+----* 3300
mid07066 2913 GA.AGATTTGTTATCCTTTATTAACGATGTATTTTGTTGGTCAGTACTGG 2961
|| |||||||||||||||||||||| ||| |||||||||||| |||||
ha01311 3188 GACAGATTTGTTATCCTTTATTAAC...GTACTTTGTTGGTCAGCACTGG 3234
3301 ----+----*----+----*----+----*----+----*----+----* 3350
mid07066 2962 GCTGACAAAAA..GTTTCTTGCTAATAAATTTAGTTGCCCAAGGC..... 3004
||||||||||| ||||||||||||||||||||||||| ||||
ha01311 3235 GCTGACAAAAATTTTTTCTTGCTAATAAATTTAGTTGCCTGAGGCAAAAT 3284
3351 ---- 3354
mid07066 3005 .... 3005
ha01311 3285 CTTC 3288