FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1472.ptfa, 749 aa
 vs ./tmplib.26680 library

1768268 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.1173+/-0.00669; mu= 5.9251+/- 0.445
 mean_var=288.6769+/-66.984, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0755

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0374  ( 605 res)   mbg07010                   ( 605)  927  114 3.9e-26


>>mKIAA0374  ( 605 res)   mbg07010                        (605 aa)
 initn: 1160 init1: 825 opt: 927  Z-score: 561.5  bits: 114.3 E(): 3.9e-26
Smith-Waterman score: 1199;  41.250% identity (45.383% ungapped) in 560 aa overlap (215-742:46-586)

          190       200       210       220       230        240   
mKIAA1 GHSPIGFCPGSDEDFTRKKCRIGMVGEGSIQSARHKKEPKGGIIKPG-SEADFSSSSSTG
                                     ...: ..   :: . :. .   .   . : 
mKIAA0 GGSPNHGSLRRLLITARRLLQRLQRRCAKRRGSRASRPDCGGRVDPAPGTPPIPPLTRTR
          20        30        40        50        60        70     

           250       260        270       280       290       300  
mKIAA1 SISAPEVHMSTTGNKRASF-SRNRGPHGRSNGASSHKSGSSPPSPREKDLVSMLCRNPLS
       :. :    ::  :..:::  ::. :  :::. :   .  . : :  :.  .    :    
mKIAA0 SLMA----MSLQGSRRASAGSRSGGTLGRSGLAVFAQCPQVPASQNEQRPLLPASRRTSP
              80        90       100       110       120       130 

            310        320       330       340       350       360 
mKIAA1 PSNIHPSYAPSS-PSSSNSGSYKGSDCSPVMRRSGRYMSCGENHGVKPPNPEQYLTPLQQ
       : ... .:. ::  ::::::: :::: ::. ::: .:  :..:::.:::.::::::::::
mKIAA0 PVSVRDAYGTSSLSSSSNSGSCKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQ
             140       150       160       170       180       190 

             370       380       390       400       410       420 
mKIAA1 KEVTVRHLRTKLKESERRLHERESEIMELKSQLARMREDWIEEECHRVEAQLALKEARKE
       ::: .:::...::... ::..:..:: .::.::.::.:::::::::::::::::::::::
mKIAA0 KEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKE
             200       210       220       230       240       250 

             430       440       450       460       470       480 
mKIAA1 IKQLKQVIETMRSSLADKDKGIQKYFVDINIQNKKLESLLQSMEMAHNSSLRDELCLDFS
       :.::::::.:....: :::::.:::::::::::::::.::.:::.:.:.  ..:   . .
mKIAA0 IRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKLETLLHSMEVAQNGVAKEEGTGESA
             260       270       280       290       300       310 

             490       500               510       520       530   
mKIAA1 FDSPEKSLPLSSTFDKLPD-GLSLEEQI-------TEEGADSELLVGDSMAEGTDLLDEM
         :: .::  :::. :: : ..  ..:        .:.::::  ...:.    :: :.  
mKIAA0 GGSPARSLTRSSTYTKLSDPAVCGDRQPGDPSNTSAEDGADSGYVAADDTLSRTDALEAS
             320       330       340       350       360       370 

           540         550              560       570          580 
mKIAA1 VTATTTESSGLEF--VHST-------PGPQALKALPLVSHEEGIAV---MEQAVQTDVVP
          ..  . :::   .::.       :. .. . : : . : :. :   .:.:.::: : 
mKIAA0 SLLSSGVDCGLEEASLHSSFNLGPRFPASNTYEKL-LCGMEAGVQVSCMQERAIQTDFVQ
             380       390       400        410       420       430

             590       600       610       620       630       640 
mKIAA1 FSPAISELIQSVLKLQDYCPTSSASPDESGADSMESFSESISALMLDLTPRSPNSAILLS
       ..: .. ....: . :  :  :  .  .:  :   :             ::.:.::....
mKIAA0 YQPDLNTILEKVGQAQ-VCG-SVLKDRHSELDPHPS------------GPRDPDSAVVVT
              440         450       460                   470      

                  650           660       670       680       690  
mKIAA1 ---PVEIP--FSKGAM----EAHANRLMRELDFAAYTEERLDSVLSLSQGSVVRQYWSSN
           .: :  .. :       ...:  .         ::. ... . .  .  ..::: .
mKIAA0 VGDELEAPEPITCGPATHRPAVNSNPGLPVSVVCPVEEEEEEAAAATTTEKEPKSYWSRH
        480       490       500       510       520       530      

            700       710       720       730       740            
mKIAA1 FLVDLLAVAAPVVPTVLWAFSTQRGGTDPVYNIGALLRGCCVVALHSLRRTAFHMKT   
       ..::::::..:.:::: :   .::   .:.:::..::::::.:::::.::          
mKIAA0 YIVDLLAVVVPAVPTVAWLCRSQRRQGQPIYNISSLLRGCCTVALHSIRRISCRSLGQPS
        540       550       560       570       580       590      

mKIAA0 SSTAGGSQL
        600     




749 residues in 1 query   sequences
1768268 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:46:02 2006 done: Mon Mar 27 10:46:03 2006
 Scan time:  0.900 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]