FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4110.ptfa, 737 aa vs ./tmplib.26680 library 1768280 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.9691+/-0.00708; mu= 2.0233+/- 0.468 mean_var=343.9666+/-82.901, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0692 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0642 ( 1048 res) mbg08843 (1048) 1228 136 1.4e-32 >>mKIAA0642 ( 1048 res) mbg08843 (1048 aa) initn: 1770 init1: 647 opt: 1228 Z-score: 677.4 bits: 136.5 E(): 1.4e-32 Smith-Waterman score: 1805; 38.530% identity (54.114% ungapped) in 1007 aa overlap (1-737:62-1048) 10 20 30 mKIAA4 GAFLPLKKGPKEAIPEEQELDFRGLEEEEE :::: ::: :: ::::::.::: .:: :: mKIAA0 GSGSIDDDRDSLPEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDFRPVEEGEE 40 50 60 70 80 90 40 50 60 70 mKIAA4 ----------EEEEPSEGV--DEERPEAGGKEATPLPPPENSSS--PSSLPALGPLWTT- : .::.. . :. . .: ::. : . :: :.. : .: mKIAA0 RSDSDSSHNEEAKEPDKTNRREGEKTDRAGAEASEEVPQTSLSSARPGTPSDHQPQEATQ 100 110 120 130 140 150 80 90 100 mKIAA4 ----NEEGGEAVEKELP------------PAEGDELRGLSLSPR------------ISSP .: .: ::: :..::: : .: : :: mKIAA0 FERKDEPKAEQVEKAEEENRSENSLSAKVPSRGDETVPASQQPSTPLPPDTASPLLILSP 160 170 180 190 200 210 110 120 130 140 mKIAA4 PGP----------------PG------DLEDEEGLKHLQQEAEKLVASLQDSSLEEEQFT : : :: . .::::::::.:.:::.:: ::::.:..:..: mKIAA0 PVPTPSSASRPVETAAVEAPGMSSVSTEPDDEEGLKHLEQQAEKMVAYLQDSALDDERLT 220 230 240 250 260 270 150 160 170 180 190 200 mKIAA4 AAMQTQGLRHSTAATALPLSHGAARKWFYKDPQGEIQGPFTTQEMAEWFQAGYFSMSLLV . .: .: . ....:: : : .::.:::::::::: :..::::::::::::.::::: mKIAA0 SKLQ----EHRAKGVSIPLMHEAMQKWYYKDPQGEIQGSFNNQEMAEWFQAGYFTMSLLV 280 290 300 310 320 210 220 230 240 250 260 mKIAA4 KRGCDEGFQPLGEVIKMWGRVPFAPGPSPPPLLGNMDQERLKKQQELAAAALYQQLQHQH ::.:::.:::::...::::::::.:::.::: .:..::::: .::::.: ::: .:: . mKIAA0 KRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGELDQERLTRQQELTA--LYQ-MQHLQ 330 340 350 360 370 380 270 280 290 300 310 320 mKIAA4 FLQLVGSRQLPQCTTLREKAAMGDLTPPQQQQLTTFLQQLQALKTPRGGDQNLLPTMSRS . :.. ..: : . ..::: :. :::::. .:::.:::: : .:::..:...:: mKIAA0 YQQFLIQQQYAQVLAQQQKAA---LSSQQQQQLALLLQQFQALKM-RMSDQNIIPSVTRS 390 400 410 420 430 440 330 340 350 360 370 mKIAA4 LSVPDSGPLWDLHTSASSQSGGEA-SLWDIPINSSTQGPILEQLQLQHKF------QERR .::::.: .:.:. .::. . :. :.::.:..... :: ::::: .: :::: mKIAA0 VSVPDTGSIWELQPAASQPAVWEGGSVWDLPLDTTAPGPSLEQLQQLEKAKAAKLEQERR 450 460 470 480 490 500 380 390 400 410 420 mKIAA4 EVELRAKREEEERKRREEKRRQQQQ----QQEEQKRRQEEEELFRRKQ---VR------- :.:.:::::::::::.:: ::::.. ::::...:.::::: :::: .: mKIAA0 EAEMRAKREEEERKRQEELRRQQEEILRRQQEEERKRREEEELARRKQEEALRRQREQEI 510 520 530 540 550 560 mKIAA4 ------------------------------------------------------------ mKIAA0 ALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKWAREEEEAQRRLE 570 580 590 600 610 620 430 440 mKIAA4 ---------------------------------------QQELLLKLLQQQQATNVPVPP ::: : .: :::: .. mKIAA0 ENRLRMEEEAARLRHEEEERKRKELELQRQKDLMRQRQQQQEALRRLQQQQQQQQLAQMK 630 640 650 660 670 680 450 mKIAA4 APSSPP------------------------------------------------------ ::: mKIAA0 LPSSSTWGQQSNTATCQSQATLSLAEIQKLEEERERQLREEQRRQQRELMKALQQQQQQQ 690 700 710 720 730 740 460 470 480 490 mKIAA4 -----PLWAGLAKQGLSMKTLLELQMESERQLHKQAAPREPL--------RAQAPNH--- :....: . . :.:::.:.: ::..:: .. ::. .: mKIAA0 QQQKLSGWGNVSKPAGTTKSLLEIQQEEARQMQKQQQQQQQQQQQHQQSNRARNSTHSNL 750 760 770 780 790 800 500 510 520 530 540 mKIAA4 RVQLGG-----LGSAPLNQWVSE-AGPLWGGPDKSGGSSGGNLGLWEDTLKSGGSLARSL ...::. ....: :::.:: .. .:.. : ....:.:.:.:..: : . mKIAA0 HTSLGNSVWGSINTGPSNQWASELVSSIWSNAD----TKNSNMGFWDDAVKEVGPRNST- 810 820 830 840 850 550 560 570 580 590 600 mKIAA4 GLKSSRSSPSLSDSYSHLSGRPVRKKTEEEEKLLKLLQGIPRPQDGFTQWCEQMLHTLST ...... ::: : . .:.: ::.:::::::::.::. . :::::::::::::.:.: mKIAA0 --NKNKNNASLSKSVG-VSNRQ-NKKVEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNT 860 870 880 890 900 910 610 620 630 640 650 660 mKIAA4 AGSLDVPMAVAILKEVESPYDVHDYIRSCLGDTLEAKEFAKQFLERRAKQKASQQRQQQQ :..:::: :..::::::::.:::: :. :::: :::::::::::::::::..::::::: mKIAA0 ANNLDVPTFVSFLKEVESPYEVHDYTRAYLGDTSEAKEFAKQFLERRAKQKVNQQRQQQQ 920 930 940 950 960 970 670 680 690 700 710 720 mKIAA4 QQQQQQQQEAWLSSTSLQTAFQANHS----TKLGPGEGSKAKRRALMLHSDPSILGYSLH ::::::.. .. ..:...::.:.: ... ...: :.. :...:::.::.:.. mKIAA0 QQQQQQDSVWGMNHSTLHSVFQTNQSNNQQSNFEAVQSGKKKKKQKMVRADPSLLGFSVN 980 990 1000 1010 1020 1030 730 mKIAA4 GPS-----GEIESVDDY . : ::::..::: mKIAA0 ASSERLNMGEIETLDDY 1040 737 residues in 1 query sequences 1768280 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:02:09 2006 done: Mon Mar 27 11:02:11 2006 Scan time: 0.880 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]