FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4110.ptfa, 737 aa
 vs ./tmplib.26680 library

1768280 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.9691+/-0.00708; mu= 2.0233+/- 0.468
 mean_var=343.9666+/-82.901, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0692

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0642  ( 1048 res)   mbg08843                  (1048) 1228  136 1.4e-32


>>mKIAA0642  ( 1048 res)   mbg08843                       (1048 aa)
 initn: 1770 init1: 647 opt: 1228  Z-score: 677.4  bits: 136.5 E(): 1.4e-32
Smith-Waterman score: 1805;  38.530% identity (54.114% ungapped) in 1007 aa overlap (1-737:62-1048)

                                             10        20        30
mKIAA4                               GAFLPLKKGPKEAIPEEQELDFRGLEEEEE
                                     :::: :::  :: ::::::.::: .:: ::
mKIAA0 GSGSIDDDRDSLPEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDFRPVEEGEE
              40        50        60        70        80        90 

                           40        50        60          70      
mKIAA4 ----------EEEEPSEGV--DEERPEAGGKEATPLPPPENSSS--PSSLPALGPLWTT-
                 : .::..    . :. . .: ::.   :  . ::  :..     :  .: 
mKIAA0 RSDSDSSHNEEAKEPDKTNRREGEKTDRAGAEASEEVPQTSLSSARPGTPSDHQPQEATQ
             100       110       120       130       140       150 

              80                    90       100                   
mKIAA4 ----NEEGGEAVEKELP------------PAEGDELRGLSLSPR------------ISSP
           .:  .: :::               :..:::    : .:             : ::
mKIAA0 FERKDEPKAEQVEKAEEENRSENSLSAKVPSRGDETVPASQQPSTPLPPDTASPLLILSP
             160       170       180       190       200       210 

       110                             120       130       140     
mKIAA4 PGP----------------PG------DLEDEEGLKHLQQEAEKLVASLQDSSLEEEQFT
       : :                ::      . .::::::::.:.:::.:: ::::.:..:..:
mKIAA0 PVPTPSSASRPVETAAVEAPGMSSVSTEPDDEEGLKHLEQQAEKMVAYLQDSALDDERLT
             220       230       240       250       260       270 

         150       160       170       180       190       200     
mKIAA4 AAMQTQGLRHSTAATALPLSHGAARKWFYKDPQGEIQGPFTTQEMAEWFQAGYFSMSLLV
       . .:    .: . ....:: : : .::.:::::::::: :..::::::::::::.:::::
mKIAA0 SKLQ----EHRAKGVSIPLMHEAMQKWYYKDPQGEIQGSFNNQEMAEWFQAGYFTMSLLV
                 280       290       300       310       320       

         210       220       230       240       250       260     
mKIAA4 KRGCDEGFQPLGEVIKMWGRVPFAPGPSPPPLLGNMDQERLKKQQELAAAALYQQLQHQH
       ::.:::.:::::...::::::::.:::.::: .:..::::: .::::.:  ::: .:: .
mKIAA0 KRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGELDQERLTRQQELTA--LYQ-MQHLQ
       330       340       350       360       370          380    

         270       280       290       300       310       320     
mKIAA4 FLQLVGSRQLPQCTTLREKAAMGDLTPPQQQQLTTFLQQLQALKTPRGGDQNLLPTMSRS
       . :.. ..:  :  . ..:::   :.  :::::. .:::.::::  : .:::..:...::
mKIAA0 YQQFLIQQQYAQVLAQQQKAA---LSSQQQQQLALLLQQFQALKM-RMSDQNIIPSVTRS
          390       400          410       420        430       440

         330       340        350       360       370              
mKIAA4 LSVPDSGPLWDLHTSASSQSGGEA-SLWDIPINSSTQGPILEQLQLQHKF------QERR
       .::::.: .:.:. .::. .  :. :.::.:..... :: :::::  .:       ::::
mKIAA0 VSVPDTGSIWELQPAASQPAVWEGGSVWDLPLDTTAPGPSLEQLQQLEKAKAAKLEQERR
              450       460       470       480       490       500

      380       390       400           410       420              
mKIAA4 EVELRAKREEEERKRREEKRRQQQQ----QQEEQKRRQEEEELFRRKQ---VR-------
       :.:.:::::::::::.:: ::::..    ::::...:.::::: ::::   .:       
mKIAA0 EAEMRAKREEEERKRQEELRRQQEEILRRQQEEERKRREEEELARRKQEEALRRQREQEI
              510       520       530       540       550       560

                                                                   
mKIAA4 ------------------------------------------------------------
                                                                   
mKIAA0 ALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKWAREEEEAQRRLE
              570       580       590       600       610       620

                                                 430       440     
mKIAA4 ---------------------------------------QQELLLKLLQQQQATNVPVPP
                                              ::: : .: ::::  ..    
mKIAA0 ENRLRMEEEAARLRHEEEERKRKELELQRQKDLMRQRQQQQEALRRLQQQQQQQQLAQMK
              630       640       650       660       670       680

         450                                                       
mKIAA4 APSSPP------------------------------------------------------
        :::                                                        
mKIAA0 LPSSSTWGQQSNTATCQSQATLSLAEIQKLEEERERQLREEQRRQQRELMKALQQQQQQQ
              690       700       710       720       730       740

                  460       470       480               490        
mKIAA4 -----PLWAGLAKQGLSMKTLLELQMESERQLHKQAAPREPL--------RAQAPNH---
              :....: . . :.:::.:.:  ::..::   ..          ::.  .:   
mKIAA0 QQQKLSGWGNVSKPAGTTKSLLEIQQEEARQMQKQQQQQQQQQQQHQQSNRARNSTHSNL
              750       760       770       780       790       800

         500            510        520       530       540         
mKIAA4 RVQLGG-----LGSAPLNQWVSE-AGPLWGGPDKSGGSSGGNLGLWEDTLKSGGSLARSL
       ...::.     ....: :::.:: .. .:.. :    ....:.:.:.:..:  :    . 
mKIAA0 HTSLGNSVWGSINTGPSNQWASELVSSIWSNAD----TKNSNMGFWDDAVKEVGPRNST-
              810       820       830           840       850      

     550       560       570       580       590       600         
mKIAA4 GLKSSRSSPSLSDSYSHLSGRPVRKKTEEEEKLLKLLQGIPRPQDGFTQWCEQMLHTLST
         ...... ::: : . .:.:   ::.:::::::::.::. . :::::::::::::.:.:
mKIAA0 --NKNKNNASLSKSVG-VSNRQ-NKKVEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNT
           860        870        880       890       900       910 

     610       620       630       640       650       660         
mKIAA4 AGSLDVPMAVAILKEVESPYDVHDYIRSCLGDTLEAKEFAKQFLERRAKQKASQQRQQQQ
       :..::::  :..::::::::.:::: :. :::: :::::::::::::::::..:::::::
mKIAA0 ANNLDVPTFVSFLKEVESPYEVHDYTRAYLGDTSEAKEFAKQFLERRAKQKVNQQRQQQQ
             920       930       940       950       960       970 

     670       680       690           700       710       720     
mKIAA4 QQQQQQQQEAWLSSTSLQTAFQANHS----TKLGPGEGSKAKRRALMLHSDPSILGYSLH
       ::::::..   .. ..:...::.:.:    ...   ...: :..  :...:::.::.:..
mKIAA0 QQQQQQDSVWGMNHSTLHSVFQTNQSNNQQSNFEAVQSGKKKKKQKMVRADPSLLGFSVN
             980       990      1000      1010      1020      1030 

              730       
mKIAA4 GPS-----GEIESVDDY
       . :     ::::..:::
mKIAA0 ASSERLNMGEIETLDDY
            1040        




737 residues in 1 query   sequences
1768280 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:02:09 2006 done: Mon Mar 27 11:02:11 2006
 Scan time:  0.880 Display time:  0.070

Function used was FASTA [version 3.4t11 Apr 17, 2002]