# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mid06072.fasta.nr -Q ../query/mFLJ00261.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00261, 183 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7917283 sequences Expectation_n fit: rho(ln(x))= 4.8452+/-0.00018; mu= 8.1470+/- 0.010 mean_var=61.1312+/-11.733, 0's: 30 Z-trim: 57 B-trim: 0 in 0/65 Lambda= 0.164037 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|60359896|dbj|BAD90167.1| mFLJ00261 protein [Mus ( 183) 1237 300.7 8e-80 gi|19263800|gb|AAH25127.1| Arhgef5 protein [Mus mu ( 380) 1104 269.4 4.3e-70 gi|148681501|gb|EDL13448.1| mCG23580 [Mus musculus ( 452) 1104 269.5 4.9e-70 gi|169234803|ref|NP_598435.1| Rho guanine nucleoti (1581) 1104 269.9 1.3e-69 gi|149065466|gb|EDM15542.1| Rho guanine nucleotide ( 880) 1079 263.8 5e-68 gi|109473424|ref|XP_001073085.1| PREDICTED: simila (1682) 1079 264.0 8.4e-68 gi|109471984|ref|XP_342677.2| PREDICTED: similar t (1682) 1079 264.0 8.4e-68 gi|484102|gb|AAA18010.1| guanine nucleotide regula ( 519) 1055 257.9 1.7e-66 gi|119600501|gb|EAW80095.1| Rho guanine nucleotide ( 675) 1055 258.0 2.1e-66 gi|223460884|gb|AAI36662.1| Rho guanine nucleotide (1597) 1055 258.3 4.1e-66 gi|205371738|sp|Q12774.2|ARHG5_HUMAN RecName: Full (1597) 1055 258.3 4.1e-66 gi|50959191|ref|NP_005426.2| rho guanine nucleotid (1597) 1055 258.3 4.1e-66 gi|47077655|dbj|BAD18708.1| FLJ00261 protein [Homo (1651) 1055 258.3 4.2e-66 gi|114616573|ref|XP_519460.2| PREDICTED: rho guani (1754) 1055 258.3 4.4e-66 gi|194210075|ref|XP_001915681.1| PREDICTED: simila (1545) 1045 255.9 2.1e-65 gi|73978658|ref|XP_539834.2| PREDICTED: similar to (1604) 1043 255.4 3e-65 gi|109068700|ref|XP_001094223.1| PREDICTED: simila (1859) 1037 254.1 8.9e-65 gi|126341007|ref|XP_001367368.1| PREDICTED: simila (1637) 934 229.6 1.8e-57 gi|13605423|gb|AAK32711.1| guanine nucleotide regu ( 144) 904 221.8 3.5e-56 gi|224095869|ref|XP_002188092.1| PREDICTED: simila (1721) 813 201.0 7.6e-49 gi|118083243|ref|XP_417225.2| PREDICTED: similar t (1733) 788 195.1 4.6e-47 gi|193786865|dbj|BAG52188.1| unnamed protein produ ( 398) 721 178.8 8.5e-43 gi|149561144|ref|XP_001518302.1| PREDICTED: simila ( 453) 619 154.7 1.7e-35 gi|169642674|gb|AAI60596.1| LOC100145354 protein [ ( 560) 566 142.2 1.2e-31 gi|189529671|ref|XP_001336898.2| PREDICTED: simila (1410) 525 132.8 2.1e-28 gi|47208883|emb|CAF98185.1| unnamed protein produc ( 775) 515 130.3 6.9e-28 gi|158455055|gb|AAI16025.1| ARHGEF5 protein [Bos t ( 441) 477 121.1 2.2e-25 gi|119888890|ref|XP_874604.2| PREDICTED: similar t ( 810) 457 116.6 9.6e-24 gi|39644702|gb|AAH12982.1| ARHGEF19 protein [Homo ( 706) 451 115.1 2.3e-23 gi|119572156|gb|EAW51771.1| Rho guanine nucleotide ( 802) 451 115.1 2.6e-23 gi|74750701|sp|Q8IW93.1|ARHGJ_HUMAN RecName: Full= ( 802) 451 115.1 2.6e-23 gi|73950727|ref|XP_544545.2| PREDICTED: similar to ( 644) 437 111.8 2.1e-22 gi|149024480|gb|EDL80977.1| Rho guanine nucleotide ( 806) 433 110.9 4.9e-22 gi|149024478|gb|EDL80975.1| Rho guanine nucleotide ( 839) 433 110.9 5.1e-22 gi|149024477|gb|EDL80974.1| Rho guanine nucleotide ( 888) 433 110.9 5.3e-22 gi|81875493|sp|Q8BWA8.1|ARHGJ_MOUSE RecName: Full= ( 802) 429 109.9 9.4e-22 gi|38051872|gb|AAH60376.1| Rho guanine nucleotide ( 802) 429 109.9 9.4e-22 gi|148681411|gb|EDL13358.1| Rho guanine nucleotide ( 807) 429 109.9 9.5e-22 gi|28175404|gb|AAH45251.1| LOC398522 protein [Xeno ( 566) 419 107.5 3.7e-21 gi|47207336|emb|CAF95474.1| unnamed protein produc ( 308) 416 106.6 3.7e-21 gi|125837366|ref|XP_697546.2| PREDICTED: similar t ( 728) 417 107.1 6.3e-21 gi|110264571|gb|ABG56875.1| Rho guanine nucleotide ( 856) 417 107.1 7.1e-21 gi|126328957|ref|XP_001377114.1| PREDICTED: simila ( 803) 406 104.5 4.1e-20 gi|50927565|gb|AAH78722.1| Ngef protein [Rattus no ( 313) 397 102.1 8.5e-20 gi|60688157|gb|AAH91122.1| Ngef protein [Rattus no ( 361) 397 102.1 9.5e-20 gi|57791220|gb|AAW56440.1| ephexin1 [Gallus gallus ( 533) 398 102.5 1.1e-19 gi|149711225|ref|XP_001499155.1| PREDICTED: neuron ( 711) 399 102.8 1.2e-19 gi|194386928|dbj|BAG59830.1| unnamed protein produ ( 618) 398 102.5 1.2e-19 gi|47222767|emb|CAG01734.1| unnamed protein produc ( 526) 397 102.2 1.3e-19 gi|194375596|dbj|BAG56743.1| unnamed protein produ ( 433) 396 101.9 1.3e-19 >>gi|60359896|dbj|BAD90167.1| mFLJ00261 protein [Mus mus (183 aa) initn: 1237 init1: 1237 opt: 1237 Z-score: 1589.4 bits: 300.7 E(): 8e-80 Smith-Waterman score: 1237; 100.000% identity (100.000% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKNLFRLFLLHNAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKNLFRLFLLHNAQ 10 20 30 40 50 60 70 80 90 100 110 120 mFLJ00 GTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKPRENDELALEKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 GTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKPRENDELALEKA 70 80 90 100 110 120 130 140 150 160 170 180 mFLJ00 DVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAHRVKTAKLQLVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 DVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAHRVKTAKLQLVE 130 140 150 160 170 180 mFLJ00 QQV ::: gi|603 QQV >>gi|19263800|gb|AAH25127.1| Arhgef5 protein [Mus muscul (380 aa) initn: 1104 init1: 1104 opt: 1104 Z-score: 1414.8 bits: 269.4 E(): 4.3e-70 Smith-Waterman score: 1104; 100.000% identity (100.000% similar) in 164 aa overlap (20-183:217-380) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::::::: gi|192 VSPGLRRKLTTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN 190 200 210 220 230 240 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|192 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP 250 260 270 280 290 300 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|192 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH 310 320 330 340 350 360 170 180 mFLJ00 RVKTAKLQLVEQQV :::::::::::::: gi|192 RVKTAKLQLVEQQV 370 380 >>gi|148681501|gb|EDL13448.1| mCG23580 [Mus musculus] (452 aa) initn: 1104 init1: 1104 opt: 1104 Z-score: 1413.7 bits: 269.5 E(): 4.9e-70 Smith-Waterman score: 1104; 100.000% identity (100.000% similar) in 164 aa overlap (20-183:289-452) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::::::: gi|148 VSPGLRRKLTTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN 260 270 280 290 300 310 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP 320 330 340 350 360 370 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH 380 390 400 410 420 430 170 180 mFLJ00 RVKTAKLQLVEQQV :::::::::::::: gi|148 RVKTAKLQLVEQQV 440 450 >>gi|169234803|ref|NP_598435.1| Rho guanine nucleotide e (1581 aa) initn: 1104 init1: 1104 opt: 1104 Z-score: 1405.9 bits: 269.9 E(): 1.3e-69 Smith-Waterman score: 1104; 100.000% identity (100.000% similar) in 164 aa overlap (20-183:1418-1581) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::::::: gi|169 VSPGLRRKLTTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN 1390 1400 1410 1420 1430 1440 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP 1450 1460 1470 1480 1490 1500 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH 1510 1520 1530 1540 1550 1560 170 180 mFLJ00 RVKTAKLQLVEQQV :::::::::::::: gi|169 RVKTAKLQLVEQQV 1570 1580 >>gi|149065466|gb|EDM15542.1| Rho guanine nucleotide exc (880 aa) initn: 1079 init1: 1079 opt: 1079 Z-score: 1377.6 bits: 263.8 E(): 5e-68 Smith-Waterman score: 1079; 97.561% identity (99.390% similar) in 164 aa overlap (20-183:717-880) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::: ::: gi|149 VSPGLKRKLTTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGAHKN 690 700 710 720 730 740 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|149 LFRLFLLHNAQGTQAEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP 750 760 770 780 790 800 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH :::::::::::::::::::::::::::::::::::::::.::::::::::::.::::::: gi|149 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPLQQVEFISNPEVRVQNLKEAH 810 820 830 840 850 860 170 180 mFLJ00 RVKTAKLQLVEQQV :::::::::::::: gi|149 RVKTAKLQLVEQQV 870 880 >>gi|109473424|ref|XP_001073085.1| PREDICTED: similar to (1682 aa) initn: 1079 init1: 1079 opt: 1079 Z-score: 1373.6 bits: 264.0 E(): 8.4e-68 Smith-Waterman score: 1079; 97.561% identity (99.390% similar) in 164 aa overlap (20-183:1519-1682) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::: ::: gi|109 VSPGLKRKLTTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGAHKN 1490 1500 1510 1520 1530 1540 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|109 LFRLFLLHNAQGTQAEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP 1550 1560 1570 1580 1590 1600 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH :::::::::::::::::::::::::::::::::::::::.::::::::::::.::::::: gi|109 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPLQQVEFISNPEVRVQNLKEAH 1610 1620 1630 1640 1650 1660 170 180 mFLJ00 RVKTAKLQLVEQQV :::::::::::::: gi|109 RVKTAKLQLVEQQV 1670 1680 >>gi|109471984|ref|XP_342677.2| PREDICTED: similar to rh (1682 aa) initn: 1079 init1: 1079 opt: 1079 Z-score: 1373.6 bits: 264.0 E(): 8.4e-68 Smith-Waterman score: 1079; 97.561% identity (99.390% similar) in 164 aa overlap (20-183:1519-1682) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::: ::: gi|109 VSPGLKRKLTTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGAHKN 1490 1500 1510 1520 1530 1540 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|109 LFRLFLLHNAQGTQAEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP 1550 1560 1570 1580 1590 1600 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH :::::::::::::::::::::::::::::::::::::::.::::::::::::.::::::: gi|109 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPLQQVEFISNPEVRVQNLKEAH 1610 1620 1630 1640 1650 1660 170 180 mFLJ00 RVKTAKLQLVEQQV :::::::::::::: gi|109 RVKTAKLQLVEQQV 1670 1680 >>gi|484102|gb|AAA18010.1| guanine nucleotide regulatory (519 aa) initn: 1055 init1: 1055 opt: 1055 Z-score: 1350.2 bits: 257.9 E(): 1.7e-66 Smith-Waterman score: 1055; 95.706% identity (99.387% similar) in 163 aa overlap (20-182:356-518) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::::::: gi|484 ASPGLRRKLNTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN 330 340 350 360 370 380 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP :::::: .:.::.:.::::::::::::::::::::::::::::::::.:::::::::::: gi|484 LFRLFLRQNTQGAQAEFLFRTETQSEKLRWISALAMPREELDLLECYNSPQVQCLRAYKP 390 400 410 420 430 440 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|484 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGERGWFPVQQVEFISNPEVRAQNLKEAH 450 460 470 480 490 500 170 180 mFLJ00 RVKTAKLQLVEQQV ::::::::::::: gi|484 RVKTAKLQLVEQQA 510 >>gi|119600501|gb|EAW80095.1| Rho guanine nucleotide exc (675 aa) initn: 1055 init1: 1055 opt: 1055 Z-score: 1348.5 bits: 258.0 E(): 2.1e-66 Smith-Waterman score: 1055; 95.706% identity (99.387% similar) in 163 aa overlap (20-182:512-674) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::::::: gi|119 ASPGLRRKLNTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN 490 500 510 520 530 540 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP :::::: .:.::.:.::::::::::::::::::::::::::::::::.:::::::::::: gi|119 LFRLFLRQNTQGAQAEFLFRTETQSEKLRWISALAMPREELDLLECYNSPQVQCLRAYKP 550 560 570 580 590 600 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|119 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGERGWFPVQQVEFISNPEVRAQNLKEAH 610 620 630 640 650 660 170 180 mFLJ00 RVKTAKLQLVEQQV ::::::::::::: gi|119 RVKTAKLQLVEQQA 670 >>gi|223460884|gb|AAI36662.1| Rho guanine nucleotide exc (1597 aa) initn: 1055 init1: 1055 opt: 1055 Z-score: 1343.2 bits: 258.3 E(): 4.1e-66 Smith-Waterman score: 1055; 95.706% identity (99.387% similar) in 163 aa overlap (20-182:1434-1596) 10 20 30 40 mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN :::::::::::::::::::::::::::::: gi|223 ASPGLRRKLNTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGPHKN 1410 1420 1430 1440 1450 1460 50 60 70 80 90 100 mFLJ00 LFRLFLLHNAQGTQVEFLFRTETQSEKLRWISALAMPREELDLLECYDSPQVQCLRAYKP :::::: .:.::.:.::::::::::::::::::::::::::::::::.:::::::::::: gi|223 LFRLFLRQNTQGAQAEFLFRTETQSEKLRWISALAMPREELDLLECYNSPQVQCLRAYKP 1470 1480 1490 1500 1510 1520 110 120 130 140 150 160 mFLJ00 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAH ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|223 RENDELALEKADVVMVTQQSSDGWLEGVRLSDGERGWFPVQQVEFISNPEVRAQNLKEAH 1530 1540 1550 1560 1570 1580 170 180 mFLJ00 RVKTAKLQLVEQQV ::::::::::::: gi|223 RVKTAKLQLVEQQA 1590 183 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 02:52:01 2009 done: Fri Mar 13 02:56:32 2009 Total Scan time: 645.820 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]