FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0177.ptfa, 1269 aa vs ./tmplib.26680 library 1767748 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.0456+/-0.00458; mu= 17.4289+/- 0.306 mean_var=102.6591+/-23.151, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.1266 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4022 ( 798 res) mid01018 ( 798) 439 92 5.8e-19 >>mKIAA4022 ( 798 res) mid01018 (798 aa) initn: 425 init1: 302 opt: 439 Z-score: 432.8 bits: 91.6 E(): 5.8e-19 Smith-Waterman score: 664; 26.557% identity (29.616% ungapped) in 610 aa overlap (620-1188:11-598) 590 600 610 620 630 640 mKIAA0 VEEQRAEPSSVPEAGDFQLPDIKPFTNIKAGLQDASTNPVPLDSVHIKGRVIDFVAQVIV :: .. . ::: .. . . .::: :.. mKIAA4 KRAITMEHHCGLITSNKETVPLKNISVTLSINEFVAAVVA 10 20 30 40 650 660 670 680 690 700 mKIAA0 FQTYTNQSHVPIEAKYIFPLDDKAAVCGFEAFINGKHIVGEIKEKEEARQEYREAVSQGH .: :. .::.:: ..::.:. .:: .:::...::.::.:...: .:..::.::.:::: mKIAA4 TLNYENEEKVPLEATFVFPMDEDSAVYSFEALVDGKKIVAELQDKMKAHSEYEEALSQGH 50 60 70 80 90 100 710 720 730 740 750 760 mKIAA0 GAYLMDQD--TPDVFTVSVGNLPPRAKVLIKITYITELSIQSPVAI-FFIPGTVAPWQQ- :::...: . :::. .:::: : ::: . . :. :: ... :. ...:. . : : mKIAA4 QAYLLEEDDYSRDVFSCNVGNLQPGAKVAVTLRYVQELPLETDGALRYLLPAILNPRYQL 110 120 130 140 150 160 770 780 790 800 810 820 mKIAA0 -DKALNENLQDTVETIRIKEIGAEQSFSLAMSIEMPYMIEFISSD-THELRQKSTDCK-- ... : :. :. .... ..... .: . :: ..:. . : :: : mKIAA4 SEQSANSCLNIQKPTVPLEDL--PYTLNMTATITSQHGIERVQSNCSLSPIQYLTDDKTS 170 180 190 200 210 830 840 850 860 870 mKIAA0 AVVSTVEGSSLDSGGFSLHIGLRDAYLPRMWVEK-----HPEK--ESEACMLVFQPELAD : :: .:: ..: : : ... : . :: .:.. . . :. : :.. . mKIAA4 AQVSLTEGHKFDRD-VELLIYYNEVHSPSVAVEMGMLDMKPDSLMGAPSAMVSFYPDIPE 220 230 240 250 260 270 880 890 900 910 920 mKIAA0 VLPDLRGKNEVIICLDCSSSMEGVTFTQ---------AKQVALYALSLLGEEQKVNIMQF : . .. .: .. .: :.::.. :. ::.. : :. : ::. : mKIAA4 VEAS-KACGEFVFLMDRSGSMDSPMSTENNSQLRIEAAKETLLLLLKSLPMGCYFNIYGF 280 290 300 310 320 330 930 940 950 960 970 980 mKIAA0 GTGYKELFSYPKCITDSKM--ATEFIMSAAPSMGNTDFWKVLR--YLSLLYPSEGFRNIL :..:...: :.. : :.. . . ..:.:.. : : . :.. .. .. mKIAA4 GSSYEKFFPESVKYTQDTMEDAVKRVKALKANLGGTEILTPLCNIYKASSIPGHPLQ-LF 340 350 360 370 380 390 990 1000 1010 1020 1030 1040 mKIAA0 LISDGHLQSESLTLQLVKRNIQHTRVFTCAVGSTANRHILRTLSQCGAGVFEYFNSKSKH ...::.... ... :: : .. : :. ..:. :. ....... ..:. ....:.. mKIAA4 VFTDGEVSDTFSVIREVKLNSKKHRCFSFGIGQGASTSLIKNIARVSGGTAVFITGKDRM 400 410 420 430 440 450 1050 1060 1070 1080 1090 mKIAA0 SWKKQIEAQMTRIRSPSC--HSVSVKWQQLSRDAPEPLQAPAWVP---SLFHNDRLLVY- : .: . . .: ..:..: : : :.. : ..:...::..: mKIAA4 ----QTKALGSLKFALQCAVDNISLSW-----DLPPGLSVKMLSPEQLTIFRGQRLIIYA 460 470 480 490 500 1100 1110 1120 1130 1140 mKIAA0 ---GFIPH--CTQAT-LQAFIQEKEFCTMVSTTELQKTTGTM-IHKLAARALIRDYEDGI :..:. : :. :. ..: . . . :. . :.. .. ::.:::..::. . : mKIAA4 QLTGLMPQVESTGAVCLKHILQGRSLENRVTFSLQPKANDNFTIHRLAAKSLIQTKDFG- 510 520 530 540 550 560 1150 1160 1170 1180 1190 1200 mKIAA0 LHDDETNHEMKKNIMKSLIIELSKENSLITQFTSFVAVEKRDVNEIPFANVPNISELVAK ..:...: :...:. .: .......::.:.:..:. mKIAA4 --SQEASKEEKEDVMN-----ISLQSGVLSSFTAFIAINKELNKPVQGPLAHRVIPRPVM 570 580 590 600 610 1210 1220 1230 1240 1250 1260 mKIAA0 EDVDFLPYVSWQEKQPEASISQTEIDSSRLKHNKLSDGHGVLQPVSVSSEVNEKPSLLLA mKIAA4 AGSSSMRFYSSFSGGFKGPQPRSLRVPAYDLCSAESANLVLKKSACSAIQKKKTNSSTNK 620 630 640 650 660 670 1269 residues in 1 query sequences 1767748 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:13:52 2006 done: Mon Mar 27 10:13:53 2006 Scan time: 1.150 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]