# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mic40081.fasta.nr -Q ../query/mKIAA1690.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1690, 202 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921249 sequences Expectation_n fit: rho(ln(x))= 4.6877+/-0.000183; mu= 10.6029+/- 0.010 mean_var=62.7010+/-12.229, 0's: 52 Z-trim: 55 B-trim: 1562 in 1/66 Lambda= 0.161971 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|62654208|ref|XP_217247.3| PREDICTED: similar to ( 575) 636 156.8 5.6e-36 gi|81896106|sp|Q8BHE4.1|TM108_MOUSE RecName: Full= ( 574) 628 155.0 2.1e-35 gi|109049344|ref|XP_001115415.1| PREDICTED: simila ( 575) 627 154.7 2.4e-35 gi|52545583|emb|CAB66513.3| hypothetical protein [ ( 463) 622 153.5 4.6e-35 gi|73990581|ref|XP_853456.1| PREDICTED: similar to ( 588) 623 153.8 4.7e-35 gi|114589454|ref|XP_516759.2| PREDICTED: similar t ( 564) 622 153.6 5.4e-35 gi|109895211|sp|Q6UXF1.2|TM108_HUMAN RecName: Full ( 575) 622 153.6 5.4e-35 gi|37181887|gb|AAQ88747.1| KRSL1875 [Homo sapiens] ( 575) 622 153.6 5.4e-35 gi|193787773|dbj|BAG52976.1| unnamed protein produ ( 105) 607 149.5 1.7e-34 gi|194221604|ref|XP_001495844.2| PREDICTED: simila ( 718) 616 152.2 1.7e-34 gi|224045489|ref|XP_002196596.1| PREDICTED: hypoth ( 467) 607 150.0 5.3e-34 gi|50732846|ref|XP_418792.1| PREDICTED: similar to ( 467) 607 150.0 5.3e-34 gi|151554949|gb|AAI47950.1| TMEM108 protein [Bos t ( 583) 605 149.6 8.6e-34 gi|149632079|ref|XP_001513921.1| PREDICTED: simila ( 398) 599 148.1 1.7e-33 gi|109485186|ref|XP_001069716.1| PREDICTED: simila ( 605) 534 133.0 8.8e-29 gi|189536601|ref|XP_691545.3| PREDICTED: similar t ( 493) 485 121.5 2.1e-25 gi|47221192|emb|CAG05513.1| unnamed protein produc ( 384) 415 105.1 1.5e-20 gi|149018731|gb|EDL77372.1| similar to mucin 7, sa ( 557) 380 97.0 5.6e-18 gi|194041104|ref|XP_001925005.1| PREDICTED: simila ( 556) 331 85.6 1.6e-14 gi|126341650|ref|XP_001379684.1| PREDICTED: simila ( 605) 265 70.2 7.3e-10 >>gi|62654208|ref|XP_217247.3| PREDICTED: similar to H02 (575 aa) initn: 643 init1: 621 opt: 636 Z-score: 802.2 bits: 156.8 E(): 5.6e-36 Smith-Waterman score: 643; 56.995% identity (71.503% similar) in 193 aa overlap (26-202:385-575) 10 20 30 40 50 mKIAA1 HGGRGRSVELGYRSAYLKCTNPWFQSPARKPGVVPQTRDPRTQKLQ----SVDQK .:: :: . .: .. . ..:. gi|626 AATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPSGVSESIVSPAKEEAEASPTTTDRG 360 370 380 390 400 410 60 70 80 90 100 mKIAA1 FKAVLGHTVSLKPTWGYMS-LNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS------- . . :: : .... : : : : .. . .: . ...::: gi|626 PRPL--STVPSTATGNFLNRLVPAGTWKPGTVANISHVAEGDKPQHRATICLSKMDIAWV 420 430 440 450 460 470 110 120 130 140 150 mKIAA1 ---LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLE .. :.:. .:::::::::::::::::::::::::::::::::::::::::::::::: gi|626 ILAISVPISSCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLE 480 490 500 510 520 530 160 170 180 190 200 mKIAA1 TSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI ::::::::::::::::::::::::::::::::::::::::::: gi|626 TSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 540 550 560 570 >>gi|81896106|sp|Q8BHE4.1|TM108_MOUSE RecName: Full=Tran (574 aa) initn: 621 init1: 621 opt: 628 Z-score: 792.1 bits: 155.0 E(): 2.1e-35 Smith-Waterman score: 659; 57.732% identity (72.680% similar) in 194 aa overlap (25-202:383-574) 10 20 30 40 50 mKIAA1 HGGRGRSVELGYRSAYLKCTNPWFQSPARKPGVVPQTRDPRTQKLQ----SVDQ :.:.: :: .: .: .. . ..:. gi|818 TAATGPTQAAFDATVSAPSPGIPQGPSATPQAPTRPSGVSESTVSPAEEEAEASPTTTDR 360 370 380 390 400 410 60 70 80 90 100 mKIAA1 KFKAVLGHTVSLKPTWGYMS-LNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS------ . . :: : .... : : : : .. . .: . ...::: gi|818 GPRPL--STVLSTATGNFLNRLVPAGTWKPGTVANISHVAEGDKPQHRATICLSKMDIAW 420 430 440 450 460 470 110 120 130 140 150 mKIAA1 ----LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSL .. :.:. .::::::::::::::::::::::::::::::::::::::::::::::: gi|818 VIVAISVPISSCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSL 480 490 500 510 520 530 160 170 180 190 200 mKIAA1 ETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI :::::::::::::::::::::::::::::::::::::::::::: gi|818 ETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 540 550 560 570 >>gi|109049344|ref|XP_001115415.1| PREDICTED: similar to (575 aa) initn: 642 init1: 617 opt: 627 Z-score: 790.8 bits: 154.7 E(): 2.4e-35 Smith-Waterman score: 661; 57.576% identity (72.222% similar) in 198 aa overlap (20-202:381-575) 10 20 30 40 mKIAA1 HGGRGRSVELGYRSAYLKCTNPWFQSPARKPGVVPQT---RDPRTQKLQ :.: :.:.. ::: .: .: gi|109 GVFTAATGPTPAAFNTSVSAPSQGIPQGASTTP--QAPTHPPGVSESTISGAKEETAATL 360 370 380 390 400 50 60 70 80 90 100 mKIAA1 SVDQKFKAVLGHTVSLKPTWGYMS-LNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS-- .. .. . :. .:: : .... : : : : : . .: . ...::: gi|109 TMTNRVPSPLSTVVSTA-TGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSKM 410 420 430 440 450 460 110 120 130 140 150 mKIAA1 --------LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPRE .. :.:. .::::::::.:::::::::::::::::::::::::::::::::: gi|109 DIAWVILAISVPISSCSVLLTVCCMKRKKKTANPENNLSYWNNAITMDYFNRHAVELPRE 470 480 490 500 510 520 160 170 180 190 200 mKIAA1 IQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI :::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 530 540 550 560 570 >>gi|52545583|emb|CAB66513.3| hypothetical protein [Homo (463 aa) initn: 612 init1: 612 opt: 622 Z-score: 785.8 bits: 153.5 E(): 4.6e-35 Smith-Waterman score: 636; 71.223% identity (80.576% similar) in 139 aa overlap (75-202:325-463) 50 60 70 80 90 100 mKIAA1 LQSVDQKFKAVLGHTVSLKPTWGYMSLNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS- : : : : . .: . ...::: gi|525 TLTMTDRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSK 300 310 320 330 340 350 110 120 130 140 150 mKIAA1 ---------LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPR .. :.:. .::::::::.:::::::::::::::::.::::::::::::::: gi|525 MDIAWVILAISVPISSCSVLLTVCCMKRKKKTANPENNLSYWNNTITMDYFNRHAVELPR 360 370 380 390 400 410 160 170 180 190 200 mKIAA1 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI ::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 420 430 440 450 460 >>gi|73990581|ref|XP_853456.1| PREDICTED: similar to K06 (588 aa) initn: 649 init1: 613 opt: 623 Z-score: 785.6 bits: 153.8 E(): 4.7e-35 Smith-Waterman score: 637; 71.223% identity (80.576% similar) in 139 aa overlap (75-202:450-588) 50 60 70 80 90 100 mKIAA1 LQSVDQKFKAVLGHTVSLKPTWGYMSLNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS- : : : : . .: . ...::: gi|739 TPTMTNRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSK 420 430 440 450 460 470 110 120 130 140 150 mKIAA1 ---------LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPR .. :.:. .:::::::.::::::::::::::::::::::::::.::::::: gi|739 MDIAWVILAISVPISSCSVLLTVCCLRRKKKTANPENNLSYWNNAITMDYFNKHAVELPR 480 490 500 510 520 530 160 170 180 190 200 mKIAA1 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI ::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 540 550 560 570 580 >>gi|114589454|ref|XP_516759.2| PREDICTED: similar to Tr (564 aa) initn: 612 init1: 612 opt: 622 Z-score: 784.6 bits: 153.6 E(): 5.4e-35 Smith-Waterman score: 636; 71.223% identity (80.576% similar) in 139 aa overlap (75-202:426-564) 50 60 70 80 90 100 mKIAA1 LQSVDQKFKAVLGHTVSLKPTWGYMSLNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS- : : : : . .: . ...::: gi|114 TLTMTDRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSK 400 410 420 430 440 450 110 120 130 140 150 mKIAA1 ---------LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPR .. :.:. .::::::::.:::::::::::::::::.::::::::::::::: gi|114 MDIAWVILAISVPISSCSVLLTVCCMKRKKKTANPENNLSYWNNTITMDYFNRHAVELPR 460 470 480 490 500 510 160 170 180 190 200 mKIAA1 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI ::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 520 530 540 550 560 >>gi|109895211|sp|Q6UXF1.2|TM108_HUMAN RecName: Full=Tra (575 aa) initn: 612 init1: 612 opt: 622 Z-score: 784.5 bits: 153.6 E(): 5.4e-35 Smith-Waterman score: 636; 71.223% identity (80.576% similar) in 139 aa overlap (75-202:437-575) 50 60 70 80 90 100 mKIAA1 LQSVDQKFKAVLGHTVSLKPTWGYMSLNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS- : : : : . .: . ...::: gi|109 TLTMTDRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSK 410 420 430 440 450 460 110 120 130 140 150 mKIAA1 ---------LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPR .. :.:. .::::::::.:::::::::::::::::.::::::::::::::: gi|109 MDIAWVILAISVPISSCSVLLTVCCMKRKKKTANPENNLSYWNNTITMDYFNRHAVELPR 470 480 490 500 510 520 160 170 180 190 200 mKIAA1 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI ::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 530 540 550 560 570 >>gi|37181887|gb|AAQ88747.1| KRSL1875 [Homo sapiens] (575 aa) initn: 612 init1: 612 opt: 622 Z-score: 784.5 bits: 153.6 E(): 5.4e-35 Smith-Waterman score: 636; 71.223% identity (80.576% similar) in 139 aa overlap (75-202:437-575) 50 60 70 80 90 100 mKIAA1 LQSVDQKFKAVLGHTVSLKPTWGYMSLNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS- : : : : . .: . ...::: gi|371 TLTMTDRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSK 410 420 430 440 450 460 110 120 130 140 150 mKIAA1 ---------LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPR .. :.:. .::::::::.:::::::::::::::::.::::::::::::::: gi|371 MDIAWVILAISVPISSCSVLLTVCCMKRKKKTANPENNLSYWNNTITMDYFNRHAVELPR 470 480 490 500 510 520 160 170 180 190 200 mKIAA1 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI ::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 EIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 530 540 550 560 570 >>gi|193787773|dbj|BAG52976.1| unnamed protein product [ (105 aa) initn: 607 init1: 607 opt: 607 Z-score: 775.6 bits: 149.5 E(): 1.7e-34 Smith-Waterman score: 607; 97.802% identity (100.000% similar) in 91 aa overlap (112-202:15-105) 90 100 110 120 130 140 mKIAA1 LGAGCPLHPSDTKSFVSSLCLSLTGPLSTAVLLTVCCMRRKKKTANPENNLSYWNNAITM ::::::::.:::::::::::::::::.::: gi|193 MKRSLQALYCQLLTVLLTVCCMKRKKKTANPENNLSYWNNTITM 10 20 30 40 150 160 170 180 190 200 mKIAA1 DYFNRHAVELPREIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 DYFNRHAVELPREIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSE 50 60 70 80 90 100 mKIAA1 I : gi|193 I >>gi|194221604|ref|XP_001495844.2| PREDICTED: similar to (718 aa) initn: 640 init1: 606 opt: 616 Z-score: 775.6 bits: 152.2 E(): 1.7e-34 Smith-Waterman score: 649; 56.995% identity (73.057% similar) in 193 aa overlap (25-202:527-718) 10 20 30 40 50 mKIAA1 HGGRGRSVELGYRSAYLKCTNPWFQSPARKPGVVPQTRDPRTQK---LQSVDQK :.::. ::: .: . .: .. .. gi|194 TAATGPTQAAFDASVSAPSKGIPQGPSSTPQAPAHPPGVSESTVSQAEEKAAATPTMTDR 500 510 520 530 540 550 60 70 80 90 100 mKIAA1 FKAVLGHTVSLKPTWGYMS-LNEHGGWGAGCLGAGCPLHPSDTKSFVSSLCLS------- . :. .:: : .... : : : : . . .: . ...::: gi|194 VPSPLSTVVSTA-TGNFLNRLVPAGTWKPGTAANISHVAEGDKPQHRATICLSKMDIAWV 560 570 580 590 600 610 110 120 130 140 150 mKIAA1 ---LTGPLST-AVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLE .. :.:. .:::::::.::::::::::::::::::::::::::.::::::::::::: gi|194 ILAISVPISSCSVLLTVCCLRRKKKTANPENNLSYWNNAITMDYFNKHAVELPREIQSLE 620 630 640 650 660 670 160 170 180 190 200 mKIAA1 TSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI ::::::::::::::::::::::::::::::::::::.:::::: gi|194 TSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLFVGTDQVSEI 680 690 700 710 202 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 10:39:48 2009 done: Sun Mar 15 10:44:30 2009 Total Scan time: 674.050 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]